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2024-05-25 09:52:33

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Genomic element: chromosome 1

Number of genes found: 137

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Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PBPRA2414 hypothetical proteinchromosome 1 CDS2791925 963 - 0.443406
NA PBPRA2820 Hypothetical heat shock proteinchromosome 1 CDS3268333 561 - 0.347594
NA PBPRA2638 similar to Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)chromosome 1 CDS3055534 1317 - 0.425209
NA PBPRA2130 hypothetical proteinchromosome 1 CDS2450399 1143 - 0.392826
NA PBPRA1866 hypothetical proteinchromosome 1 CDS2150464 726 - 0.403581
NA PBPRA0690 putative small protein B,tmRNA-binding proteinchromosome 1 CDS766645 477 - 0.45283
NA PBPRA0697 putative DnaK proteinchromosome 1 CDS772514 1920 + 0.438542
NA PBPRA0955 Hypothetical cytochrome c-type biogenesis proteinchromosome 1 CDS1053825 1272 + 0.417453
NA PBPRA0741 Hypothetical trypsin-like serine proteasechromosome 1 CDS821286 1089 + 0.450872
NA PBPRA1739 Hypothetical proteinchromosome 1 CDS1995229 279 + 0.34767
NA PBPRA0472 hypothetical proteinchromosome 1 CDS495698 996 - 0.423695
NA PBPRA1758 putative collagenase family proteasechromosome 1 CDS2019038 2259 + 0.378486
NA PBPRA1484 putative chaperone protein dnaKchromosome 1 CDS1684752 1926 - 0.44756
NA PBPRA0026 Hypothetical proteinchromosome 1 CDS27987 339 + 0.454277
NA PBPRA1154 hypothetical arginyl-tRNA-protein transferase-related proteinchromosome 1 CDS1294697 690 - 0.431884
NA PBPRA0029 Conserved hypotehtical proteinchromosome 1 CDS29470 762 - 0.467192
NA PBPRA1622 Hypothetical proteinchromosome 1 CDS1853091 924 + 0.402597
AHPC PBPRA0735 putative antioxidant, AhpC/Tsa familychromosome 1 CDS814563 618 - 0.444984
APRE PBPRA1453 alkaline serine proteasechromosome 1 CDS1629488 2046 - 0.426197
ASL7641 PBPRA2248 conserved hypothetical proteinchromosome 1 CDS2589006 267 - 0.47191
ATU3887 PBPRA1485 16 kDa heat shock protein Achromosome 1 CDS1686932 459 - 0.389978
BA4092 PBPRA1356 hypothetical protease/scaffold proteinchromosome 1 CDS1526357 804 + 0.5
C1025 PBPRA1159 putative thioredoxin reductasechromosome 1 CDS1300353 963 - 0.441329
C2731 PBPRA0954 hypothetical cytochrome c-type biogenesis proteinchromosome 1 CDS1053301 528 + 0.392045
C2732 PBPRA0953 putative thiol:disulfide interchange protein DsbEchromosome 1 CDS1052777 528 + 0.409091
CC2085 PBPRA2597 hypothetical glutathione S-transferasechromosome 1 CDS3008983 669 + 0.405082
CCOQ-1 PBPRA1833 putative cytochrome c oxidase, subunit CcoQchromosome 1 CDS2115532 174 + 0.442529
CLPB PBPRA0673 putative ATPase with chaperone activitychromosome 1 CDS740336 2745 + 0.418215
CLPX PBPRA2636 putative ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome 1 CDS3053409 1281 - 0.423107
COMM PBPRA3592 Putative ComM-related proteinchromosome 1 CDS4058766 1533 - 0.491194
COXG PBPRA0169 hypothetical cytochrome c oxidase assembly transmembrane proteinchromosome 1 CDS173857 591 + 0.445008
DSBB PBPRA2610 putative disulfide bond formation protein B(Disulfide oxidoreductase)chromosome 1 CDS3024895 531 + 0.429379
ECS0015 PBPRA0698 putative DnaJ protein, DnaJ-class molecular chaperone with C-terminal Zn finger domainchromosome 1 CDS774522 1143 + 0.461942
ECS0495 PBPRA2633 putative peptidyl-prolyl cis-trans isomerase Dchromosome 1 CDS3048244 1872 - 0.430556
ECS0587 PBPRA1097 putative peptidyl-prolyl cis-trans isomerase Bchromosome 1 CDS1216093 498 - 0.415663
ECS0929 PBPRA2419 putative glutaredoxin 1chromosome 1 CDS2798544 279 + 0.394265
ECS2349 PBPRA1725 hypothetical molecular chaperonechromosome 1 CDS1977968 1158 - 0.425734
ECS3090 PBPRA0948 Putative heme exporter protein Achromosome 1 CDS1047854 651 + 0.428571
ECS4040 PBPRA0618 putative proteasechromosome 1 CDS675838 897 - 0.428094
FKLB PBPRA3317 putative peptidyl-prolyl cis-trans isomerasechromosome 1 CDS3766241 621 + 0.455717
FKPB PBPRA0593 putative peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS646919 435 + 0.434483
GLNE PBPRA0448 putative glutamate-ammonia-ligase adenylyltransferasechromosome 1 CDS464159 2874 + 0.440501
GROEL PBPRA3387 putative chaperonin GroELchromosome 1 CDS3830626 1653 - 0.45493
HD1309 PBPRA2494 Hypothetical membrane proteinchromosome 1 CDS2889826 438 + 0.406393
HSCB PBPRA0753 putative chaperone protein HscBchromosome 1 CDS832956 516 + 0.408915
HSLU PBPRA0253 putative ATP-dependent protease HslVU, ATPase subunitchromosome 1 CDS259912 1332 - 0.437688
HSLV PBPRA0254 putative protease HslVU, subunit HslVchromosome 1 CDS261254 528 - 0.4375
MSRA PBPRA0378 putative peptide methionine sulfoxide reductasechromosome 1 CDS376866 636 - 0.388365
MSRB PBPRA2601 putative PilB-related proteinchromosome 1 CDS3012933 429 - 0.398601
NMA1141 PBPRA1253 Hypothetical proteinchromosome 1 CDS1418509 309 + 0.391586
NMA1990 PBPRA2738 hypothetical glutaredoxin 2chromosome 1 CDS3175645 651 + 0.394777
NMB0946 PBPRA0272 Putative peroxiredoxin/glutaredoxin family proteinchromosome 1 CDS285231 729 - 0.443073
NRFE PBPRA1264 Hypothetical cytochrome c-type biogenesis protein NrfFchromosome 1 CDS1431821 519 + 0.381503
NRFF_2 PBPRA1257 hypothetical formate-dependent nitrite reductase complex, NrfG proteinchromosome 1 CDS1423473 654 + 0.40367
PA1793 PBPRA1266 putative peptidyl-prolyl cis-trans isomerase Bchromosome 1 CDS1434892 543 + 0.401473
PAB1859 PBPRA1252 Hypothetical pyruvate formate lyase-activating enzymechromosome 1 CDS1417385 1017 + 0.419862
PCM PBPRA3073 putative L-isoaspartate protein carboxylmethyltransferase type IIchromosome 1 CDS3511965 630 - 0.422222
PFLA PBPRA2752 putative pyruvate formate-lyase 1 activating enzymechromosome 1 CDS3193370 741 + 0.435897
PHG219 PBPRA1263 Hypothetical thiol:disulfide interchange protein DsbEchromosome 1 CDS1431288 531 + 0.412429
PLU1270 PBPRA3018 putative clpB, ATPases with chaperone activitychromosome 1 CDS3459381 2586 - 0.425367
PLU1596 PBPRA1155 hypotheticalleucyl/phenylalanyl-tRNA-proteintran sferasechromosome 1 CDS1295395 723 - 0.42047
PLU2681 PBPRA2322 Putative heat shock protein HtpXchromosome 1 CDS2673837 900 - 0.452222
PLU3372 PBPRA0696 putative heat shock protein GrpEchromosome 1 CDS771687 621 + 0.410628
PLU3551 PBPRA0567 hypothetical proteinchromosome 1 CDS616624 723 + 0.450899
PLU3869 PBPRA2637 putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus CMCP6]chromosome 1 CDS3054805 624 - 0.426282
PLU4578 PBPRA3347 putative hflC proteinchromosome 1 CDS3795434 999 - 0.422422
PM0007 PBPRA0950 Putative heme exporter protein Cchromosome 1 CDS1049468 609 + 0.438424
PM0009 PBPRA0951 putative cytochrome c-type biogenesis proteinCcmEchromosome 1 CDS1050287 486 + 0.450617
PM0010 PBPRA1262 hypothetical cytochrome c-type biogenesis protein CcmFchromosome 1 CDS1429232 2049 + 0.434358
PM0252 PBPRA0637 hypothetical ATP-dependent proteasechromosome 1 CDS698610 1380 + 0.444928
PM1557 PBPRA0177 conserved hypothetical proteinchromosome 1 CDS181329 585 - 0.471795
PM1567 PBPRA0305 putative peptidyl-prolyl cis-trans isomerasechromosome 1 CDS321827 543 + 0.464088
PRO0786 PBPRA1656 putative glutathione S-transferasechromosome 1 CDS1883403 654 - 0.397554
PSPTO092 PBPRA3203 putative leader peptidase PilDchromosome 1 CDS3639765 900 + 0.45
R02370 PBPRA2730 putative glutathione S-transferasechromosome 1 CDS3164136 963 - 0.406023
RB5755 PBPRA2035 putative DnaK-related protein (Molecular chaperone)chromosome 1 CDS2348080 1836 + 0.461874
RSC0371 PBPRA0173 hypothetical cytochrome c oxidase assembly proteinchromosome 1 CDS177044 1062 + 0.436911
RSC1276 PBPRA1831 putative cytochrome c oxidase, subunit CcoNchromosome 1 CDS2113474 1428 + 0.443978
S0054 PBPRA0406 Putative DnaJ-related proteinchromosome 1 CDS409342 834 + 0.450839
S0160 PBPRA2970 putative protein-P-II uridylyltransferasechromosome 1 CDS3403493 2625 + 0.428952
S0390 PBPRA2635 putative ATP-dependent protease LAchromosome 1 CDS3050899 2373 - 0.4311
S1572 PBPRA2595 putative protease IVchromosome 1 CDS3005930 1854 + 0.435814
S2271 PBPRA0717 putative proteasechromosome 1 CDS789861 1407 - 0.439232
S2410 PBPRA0952 Putative cytochrome c-type biogenesis protein CcmFchromosome 1 CDS1050769 1989 + 0.445953
S4343 PBPRA3484 hypothetical heat shock protein 33chromosome 1 CDS3937382 879 + 0.428896
SF0845 PBPRA1157 putative transport ATP-binding protein CydCchromosome 1 CDS1296767 1815 - 0.461157
SF3105 PBPRA0434 putative O-sialoglycoprotein endopeptidasechromosome 1 CDS448627 1020 + 0.45
SF4329 PBPRA3348 putative Membrane protease subunitschromosome 1 CDS3796435 1164 - 0.428694
SIRA PBPRA0060 Conserved hypothetical proteinchromosome 1 CDS59336 249 - 0.413655
SO0262 PBPRA0949 putative heme exporter protein Bchromosome 1 CDS1048510 669 + 0.437967
SO0406 PBPRA3541 putative thioredoxinchromosome 1 CDS4004606 339 - 0.445428
SO2277 PBPRA0053 Putative 16kDa heat shock protein Achromosome 1 CDS51829 438 + 0.39726
SO3083 PBPRA0963 putative peptidase, insulinase familychromosome 1 CDS1064883 2826 - 0.413305
SO3224 PBPRA0927 putative flagellar protein FliJchromosome 1 CDS1025766 441 + 0.39229
SO3716 PBPRA2025 hypothetical DnaJ-class molecular chaperone with C-terminal Zn finger domainchromosome 1 CDS2337626 666 + 0.396396
STM0957 PBPRA1158 putative transport ATP-binding protein CydDchromosome 1 CDS1298481 1773 - 0.450649
STM3274 PBPRA0619 putative proteasechromosome 1 CDS676725 1008 - 0.462302
STM3453 PBPRA0308 putative FKBP-type peptidyl-prolyl cis-trans isomerase 1chromosome 1 CDS323925 819 + 0.416361
STY1221 PBPRA0037 Hypothetical flagellar proteinchromosome 1 CDS36807 375 + 0.464
STY1689 PBPRA2577 putative glutaredoxin-related proteinchromosome 1 CDS2984729 342 - 0.438596
STY2169 PBPRA0917 putative polar flagellar protein FlaJchromosome 1 CDS1013744 411 + 0.423358
STY2729 PBPRA2900 Putative bacterioferritin comigratory proteinchromosome 1 CDS3331358 471 + 0.403397
STY3080 PBPRA2333 putative organic radical activating enzymeschromosome 1 CDS2686131 669 + 0.436472
STY4324 PBPRA0817 putative peptidyl-prolyl cis-trans isomerase Achromosome 1 CDS905161 552 - 0.403986
SURA PBPRA0404 putative survival protein SurAchromosome 1 CDS405445 1305 - 0.436015
T0747 PBPRA2137 putative heat shock protein 70 family proteinchromosome 1 CDS2457326 1353 - 0.424982
T1805 PBPRA2149 Hypothetical outer membrane proteinchromosome 1 CDS2474046 744 - 0.383065
T3259 PBPRA3232 putative stringent starvation protein Achromosome 1 CDS3669171 639 - 0.43662
T4608 PBPRA2007 Hypothetical pyruvate formate lyase activating enzymechromosome 1 CDS2312831 957 + 0.415883
VC1373 PBPRA2036 putative DnaK-related proteinchromosome 1 CDS2350117 2979 + 0.429674
VC1663 PBPRA1380 putative heat shock protein HslJchromosome 1 CDS1553114 438 - 0.429224
VP0770 PBPRA0896 putative chaperone FlgNchromosome 1 CDS993677 429 - 0.391608
VPA1271 PBPRA3590 Putative thiol:disulfide interchange proteinchromosome 1 CDS4057615 603 + 0.389718
VV0759 PBPRA0754 Putative chaperone protein HscAchromosome 1 CDS833510 1854 + 0.431499
VV0957 PBPRA0898 putative FlgAchromosome 1 CDS994628 708 - 0.435028
VV0968 PBPRA0909 Hypothetical FlgJ, Muramidasechromosome 1 CDS1004121 954 + 0.414046
VV1000 PBPRA1023 putative heat shock protein HtpGchromosome 1 CDS1132849 1905 + 0.415223
VV20525 PBPRA2138 hypothetical disulfide oxidoreductasechromosome 1 CDS2458744 735 + 0.383673
VV2885 PBPRA3155 conserved hypothetical proteinchromosome 1 CDS3588677 273 + 0.391941
VV3107 PBPRA3388 putative Co-chaperonin GroESchromosome 1 CDS3832320 354 - 0.432203
VVA0891 PBPRA1108 conserved hypothetical proteinchromosome 1 CDS1229314 777 - 0.391248
VVA1600 PBPRA1742 hypothetical proteinchromosome 1 CDS1997741 360 - 0.394444
XAC1550 PBPRA2395 putative peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS2767729 474 + 0.394515
XAC3035 PBPRA1770 conserved hypothetical proteinchromosome 1 CDS2040328 324 + 0.447531
XAC3879 PBPRA0174 hypothetical protoheme IX farnesyltransferasechromosome 1 CDS178017 1032 + 0.467054
XDHC PBPRA2245 hypothetical xanthine dehydrogenase accessory factor XdhCchromosome 1 CDS2586199 834 + 0.478417
Y0137 PBPRA3240 putative DegQ serine proteasechromosome 1 CDS3675776 1368 + 0.439327
Y0139 PBPRA3241 putative DegS serine proteasechromosome 1 CDS3677406 1089 + 0.437098
Y0988 PBPRA2575 putative antioxidant, AhpC/Tsa familychromosome 1 CDS2982200 618 - 0.44822
YCBZ PBPRA1774 Hypothetical ATP-dependent protease LA-related proteinchromosome 1 CDS2045840 1749 - 0.434534
YEAZ PBPRA1071 Conserved hypothetical proteinchromosome 1 CDS1190448 711 + 0.444444
YPO0176 PBPRA0294 conserved hypothetical proteinchromosome 1 CDS311443 417 + 0.453237
YPO0741 PBPRA0043 Hypothetical LafCchromosome 1 CDS44142 408 + 0.482843
YPO1368 PBPRA1152 Putative ATP-dependent Clp protease, ATP-binding subunit ClpAchromosome 1 CDS1291826 2271 + 0.43373
YPO2216 PBPRA2480 putative sohB protein, peptidase U7 familychromosome 1 CDS2873036 1062 - 0.408663
YPO3082 PBPRA2819 putative thioredoxin-like proteinchromosome 1 CDS3267398 855 + 0.426901
YPO3502 PBPRA0604 putative cell division protein FtsHchromosome 1 CDS660341 2091 + 0.449546