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2024-05-06 11:40:11

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough

Number of genes found: 121

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA DVU0198 minor capsid protein C, degeneratechromosome CDS244274 1320 + 0.679545
NA DVU2630 lipoprotein, putativechromosome CDS2746127 876 + 0.676941
NA DVU1471 heat shock protein, Hsp20 familychromosome CDS1551724 369 + 0.623306
NA DVU2553 NifU family proteinchromosome CDS2665224 246 - 0.621951
NA DVU0657 heat shock protein, Hsp20 familychromosome CDS729163 414 + 0.664251
NA DVU2494 peptidase, M48 familychromosome CDS2606430 861 + 0.635308
NA DVU3362 conserved hypothetical proteinchromosome CDS3532518 381 + 0.543307
NA DVU1457 thioredoxin reductase, putativechromosome CDS1536247 930 - 0.625806
NA DVU2658 conserved hypothetical proteinchromosome CDS2770670 651 - 0.625192
NA DVU0683 hflC protein, putativechromosome CDS757279 852 - 0.617371
NA DVU1233 protein-P-II uridylyltransferase, putativechromosome CDS1320326 2721 + 0.641308
NA DVU1586 thioredoxin family proteinchromosome CDS1669924 468 + 0.587607
NA DVU2441 heat shock protein, Hsp20 familychromosome CDS2547504 411 + 0.53528
NA DVU0814 bacterioferritin comigratory protein, putativechromosome CDS901535 480 - 0.641667
NA DVU0034 DSBA-like thioredoxin domain proteinchromosome CDS40526 786 + 0.633588
NA DVUA0030 hypothetical proteinpDV CDS33321 702 + 0.636752
NA DVU2019 conserved hypothetical proteinchromosome CDS2096176 2070 - 0.557005
NA DVU2170 minor capsid protein Cchromosome CDS2266987 1221 - 0.658477
NA DVU3076 conserved hypothetical proteinchromosome CDS3218992 582 + 0.640893
NA DVU1404 radical SAM domain proteinchromosome CDS1473006 1107 - 0.627823
NA DVU2825 pyruvate formate-lyase 1 activating enzyme, putativechromosome CDS2933030 924 + 0.642857
NA DVU2407 conserved hypothetical proteinchromosome CDS2511892 501 - 0.656687
NA DVU0864 glycoprotease family protein, putativechromosome CDS956549 786 - 0.685751
NA DVU0151 HAMP domain/sigma-54 interaction domain proteinchromosome CDS184043 2874 + 0.642658
NA DVU1022 SUF system FeS assembly ATPase SufC, putativechromosome CDS1125448 777 - 0.620335
NA DVU0702 cytochrome c family proteinchromosome CDS781566 447 + 0.599553
NA DVU1021 conserved hypothetical proteinchromosome CDS1124280 1167 - 0.616967
NA DVU0378 thioredoxin, putativechromosome CDS428443 315 - 0.580952
NA DVU0514 FlgA family proteinchromosome CDS587379 933 + 0.683816
NA DVU3249 lipoprotein, putativechromosome CDS3421807 681 + 0.606461
NA DVU0684 hflK protein, putativechromosome CDS758132 1137 - 0.627089
NA DVU1876 dnaJ protein, putativechromosome CDS1943843 951 - 0.669821
NA DVU2569 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS2682688 426 + 0.629108
NA DVU3314 peptidase, U32 familychromosome CDS3490740 1977 - 0.672736
NA DVU2117 membrane protein, putativechromosome CDS2212495 567 + 0.633157
NA DVU1462 cytochrome c assembly protein, putativechromosome CDS1541371 732 - 0.612022
NA DVU2247 antioxidant, AhpC/Tsa familychromosome CDS2344057 615 - 0.595122
NA DVU0658 heat shock protein, Hsp20 familychromosome CDS729587 462 + 0.67316
NA DVU0725 conserved hypothetical proteinchromosome CDS808323 2148 - 0.668063
NA DVU0913 conserved hypothetical proteinchromosome CDS1007363 438 - 0.579909
NA DVU0577 formate dehydrogenase formation protein FdhE, putativechromosome CDS641591 882 + 0.633787
NA DVU0283 AhpF family protein/thioredoxin reductasechromosome CDS328770 1986 - 0.656596
NA DVU1893 ATP-dependent protease, putativechromosome CDS1965307 2421 + 0.634449
NA DVU2791 cytochrome c family proteinchromosome CDS2893852 780 + 0.629487
NA DVU1501 ClpP protease family proteinchromosome CDS1576227 735 - 0.591837
NA DVU0999 thio:disulfide interchange protein, putativechromosome CDS1093789 2160 + 0.653241
NA DVU3282 ADP-ribosylglycohydrolase family proteinchromosome CDS3457225 900 - 0.656667
NA DVU1683 hypothetical proteinchromosome CDS1761202 1737 + 0.582614
NA DVU2687 hypothetical proteinchromosome CDS2800560 531 + 0.623352
NA DVU2871 minor capsid protein Cchromosome CDS2965319 1320 - 0.67803
NA DVU1003 dnaJ domain proteinchromosome CDS1098299 987 + 0.675785
NA DVU0263 acidic cytochrome c3chromosome CDS306015 381 - 0.64042
NA DVU3077 AhpC/TSA family proteinchromosome CDS3220001 762 + 0.654856
NA DVU1468 peptidase/PDZ domain proteinchromosome CDS1548081 1449 - 0.642512
NA DVU0654 peptidase, U32 familychromosome CDS726616 1227 - 0.682152
NA DVU1552 conserved hypothetical proteinchromosome CDS1628591 1131 - 0.634836
NA DVU3320 conserved domain proteinchromosome CDS3498575 381 - 0.645669
NA DVU1811 protoheme IX farnesyltransferase, putativechromosome CDS1875780 864 - 0.619213
NA DVU1191 ATP-dependent protease La, putativechromosome CDS1281920 2571 - 0.630105
NA DVU2442 heat shock protein, Hsp20 familychromosome CDS2547975 354 + 0.590395
NA DVU3125 lipoprotein, putativechromosome CDS3272173 621 + 0.668277
NA DVU3355 SPFH domain/Band 7 family proteinchromosome CDS3526649 756 + 0.600529
NA DVU1894 hypothetical proteinchromosome CDS1967938 219 - 0.589041
NA DVU1902 conserved hypothetical proteinchromosome CDS1976382 939 - 0.654952
NA DVU1510 hypothetical proteinchromosome CDS1582432 564 - 0.441489
NA DVU1670 conserved hypothetical proteinchromosome CDS1749981 639 - 0.602504
NA DVU1840 metalloendopeptidase, putative, glycoprotease familychromosome CDS1910311 1086 - 0.633518
NA DVU1901 peptidyl-prolyl cis-trans isomerase domain proteinchromosome CDS1975298 1047 - 0.622732
NA DVU0862 flagellar protein FliS/hypothetical protein, fusionchromosome CDS953768 906 - 0.674393
NA DVU2334 hypothetical proteinchromosome CDS2429794 285 + 0.621053
NA DVU0710 competence protein comM, putativechromosome CDS788925 1665 + 0.681682
NA DVU2524 cytochrome c3, putativechromosome CDS2635568 498 + 0.574297
NA DVU1472 ATP-dependent protease, putativechromosome CDS1552107 2448 + 0.613154
NA DVU2810 formate dehydrogenase formation protein FdhE, putativechromosome CDS2912822 834 - 0.659472
NA DVU1065 peptidyl-prolyl cis-trans isomerse domain proteinchromosome CDS1167904 1890 + 0.653968
NA DVU3388 lipoprotein, putativechromosome CDS3562683 828 - 0.64372
NA DVU3278 peptidase/PDZ domain proteinchromosome CDS3452517 1557 - 0.679512
NA DVU1290 nitrate reductase, gamma subunit, putativechromosome CDS1384047 1005 - 0.583085
NA DVU2271 pyruvate formate-lyase activating enzyme, putativechromosome CDS2360039 894 - 0.630872
NA DVU0300 radical SAM domain proteinchromosome CDS347569 738 - 0.623306
NA DVU0883 glutaredoxin, putativechromosome CDS974481 258 + 0.534884
NA DVU0517 peptidase, M23/M37 familychromosome CDS590194 1833 + 0.704855
aat DVU1603 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1685506 705 + 0.662411
ccmB DVU1048 cytochrome c-type biogenesis protein CcmBchromosome CDS1149864 678 - 0.646018
ccmC DVU1047 cytochrome c-type biogenesis protein CcmCchromosome CDS1149138 675 - 0.65037
ccmE DVU1051 cytochrome c-type biogenesis protein CcmEchromosome CDS1153168 414 - 0.589372
ccmF DVU1050 cytochrome c-type biogenesis protein CcmFchromosome CDS1151185 1896 - 0.64346
clpA DVU1602 ATP-dependent Clp protease, ATP-binding subunit ClpAchromosome CDS1683179 2331 + 0.64393
clpB DVU1874 ATP-dependent Clp protease, ATP-binding subunit ClpBchromosome CDS1940871 2598 - 0.635104
clpP DVU1335 ATP-dependent Clp protease, proteolytic subunitchromosome CDS1411273 606 + 0.594059
clpX DVU1336 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS1411889 1254 + 0.602871
dnaJ DVU3243 dnaJ proteinchromosome CDS3413276 1131 + 0.659593
dnaK DVU0811 dnaK proteinchromosome CDS897365 1911 - 0.646782
ftsH DVU1278 cell division protein FtsHchromosome CDS1369986 1971 + 0.619483
groEL DVU1976 chaperonin, 60 kDachromosome CDS2050958 1644 - 0.618005
groES DVU1977 chaperonin, 10 kDachromosome CDS2052641 288 - 0.604167
grpE DVU0812 heat shock protein GrpEchromosome CDS899494 576 - 0.647569
hslU DVU1467 heat shock protein HslVU, ATPase subunit HslUchromosome CDS1546644 1326 - 0.640271
hslV DVU1577 ATP-dependent protease hslVchromosome CDS1659214 546 - 0.628205
htpG DVU2643 heat shock protein HtpGchromosome CDS2758472 1914 + 0.623824
hypB DVU2329 hydrogenase accessory protein HypBchromosome CDS2425178 675 + 0.64
hypC DVU1924 hydrogenase assembly chaperone hypC/hupFchromosome CDS1998226 252 + 0.623016
hypD DVU0325 hydrogenase expression/formation protein HypDchromosome CDS367932 1098 + 0.648452
hypE DVU0326 hydrogenase expression/formation protein HypEchromosome CDS369036 1026 + 0.668616
hypF DVU3067 [NiFe] hydrogenase maturation protein HypFchromosome CDS3202929 2520 + 0.661111
lon DVU1337 ATP-dependent protease Lachromosome CDS1413261 2466 + 0.618816
msrA DVU1984 peptide methionine sulfoxide reductase MsrAchromosome CDS2062136 627 + 0.620415
msrB DVU0576 peptide methionine sulfoxide reductase MsrBchromosome CDS640793 432 - 0.587963
pcm DVU1849 protein-L-isoaspartate O-methyltransferasechromosome CDS1917440 633 - 0.619273
ppiB-1 DVU0284 peptidyl-prolyl cis-trans isomerase Bchromosome CDS330783 495 + 0.60202
ppiB-2 DVU1873 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1940074 495 - 0.563636
ppiC DVU1470 peptidyl-prolyl cis-trans isomerase Cchromosome CDS1551307 285 + 0.624561
pppA DVU1263 type IV prepilin-like proteins leader peptidasechromosome CDS1351308 804 + 0.610696
radA DVU1590 DNA repair protein RadAchromosome CDS1672298 1371 + 0.65062
smpB DVU0828 SsrA-binding proteinchromosome CDS918623 465 - 0.630108
sppA DVU3149 signal peptide peptidase SppA, 36K typechromosome CDS3300725 891 - 0.635241
tig DVU1334 trigger factorchromosome CDS1409785 1302 + 0.59831
tpX DVU1228 thiol peroxidasechromosome CDS1317780 519 - 0.599229
trx DVU1839 thioredoxinchromosome CDS1909875 324 - 0.580247
trxB-1 DVU0377 thioredoxin reductasechromosome CDS427507 918 - 0.639434
trxB-2 DVU1838 thioredoxin-disulfide reductasechromosome CDS1908952 924 - 0.607143