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2024-05-08 02:13:49

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 174

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO3351 conserved hypothetical proteinchromosome CDS3788145 708 + 0.563559
NA PSPTO2728 peptidase, U7 familychromosome CDS3025774 1023 + 0.585533
NA PSPTO1719 glutathione peroxidase family proteinchromosome CDS1888757 552 + 0.572464
NA PSPTO3969 radical SAM domain proteinchromosome CDS4477264 648 - 0.587963
NA PSPTO0132 DsbB family proteinchromosome CDS156902 528 + 0.594697
NA PSPTO2170 heat shock protein, Hsp20 familychromosome CDS2388952 444 + 0.529279
NA PSPTO4755 conserved hypothetical proteinchromosome CDS5392110 375 + 0.541333
NA PSPTO1688 thioredoxin, putativechromosome CDS1856901 468 + 0.587607
NA PSPTO3662 xanthine dehydrogenase accessory factor XdhC, putativechromosome CDS4130333 876 + 0.618721
NA PSPTO5533 SPFH domain / Band 7 family proteinchromosome CDS6300213 1071 - 0.646125
NA PSPTO0808 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS873745 477 + 0.561845
NA PSPTO2529 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS2793112 342 - 0.567251
NA PSPTO3856 glutathione S-transferase family proteinchromosome CDS4367430 624 - 0.61859
NA PSPTO5295 conserved hypothetical proteinchromosome CDS6021581 438 - 0.582192
NA PSPTO5425 clpB protein, putativechromosome CDS6166575 2649 - 0.601736
NA PSPTO1780 PilB-related proteinchromosome CDS1950147 396 + 0.60101
NA PSPTO3955 AhpC/Tsa family proteinchromosome CDS4463212 474 + 0.556962
NA PSPTO4992 carbamoyltransferase family proteinchromosome CDS5665958 1758 - 0.597838
NA PSPTO_B0075 trbB protein, putativepDC3000B CDS63546 1086 + 0.605893
NA PSPTO2032 glutathione S-transferase family proteinchromosome CDS2218643 603 + 0.565506
NA PSPTO1263 conserved hypothetical proteinchromosome CDS1384741 933 + 0.604502
NA PSPTO3722 peptidyl-prolyl cis-trans isomerase D, putativechromosome CDS4201727 1884 - 0.563163
NA PSPTO3560 GDA1/CD39 family proteinchromosome CDS4018366 1209 - 0.506203
NA PSPTO4585 ATP-dependent protease, putativechromosome CDS5180018 2436 - 0.603448
NA PSPTO4295 DnaJ domain proteinchromosome CDS4841016 1641 + 0.556977
NA PSPTO3890 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS4402330 774 - 0.562016
NA PSPTO5296 oxidoreductase, 2OG-Fe(II) oxygenase familychromosome CDS6022156 735 - 0.578231
NA PSPTO1962 flagellar protein FliJ, putativechromosome CDS2149666 450 + 0.611111
NA PSPTO0529 hypothetical proteinchromosome CDS578208 801 - 0.509363
NA PSPTO2009 hypothetical proteinchromosome CDS2192645 1620 - 0.506173
NA PSPTO2034 conserved hypothetical proteinchromosome CDS2219685 378 - 0.550265
NA PSPTO1171 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS1286390 486 + 0.584362
NA PSPTO1926 flagellar protein, putativechromosome CDS2108384 747 - 0.583668
NA PSPTO1735 conserved hypothetical proteinchromosome CDS1901376 633 + 0.649289
NA PSPTO4264 conserved hypothetical proteinchromosome CDS4803256 555 - 0.553153
NA PSPTO0557 DnaJ-like protein DjlA, putativechromosome CDS612447 768 + 0.639323
NA PSPTO5535 SPFH domain / Band 7 family proteinchromosome CDS6302329 1947 - 0.651772
NA PSPTO0057 transposition helper proteinchromosome CDS78120 891 - 0.517396
NA PSPTO2657 xanthine dehydrogenase accessory factor XdhC, putativechromosome CDS2953462 969 + 0.646027
NA PSPTO3957 conserved hypothetical proteinchromosome CDS4464855 252 - 0.615079
NA PSPTO0448 glutathione S-transferase, putativechromosome CDS492163 615 + 0.611382
NA PSPTO4435 trypsin domain proteinchromosome CDS5002982 1161 + 0.600345
NA PSPTO1798 conserved hypothetical proteinchromosome CDS1970708 303 + 0.60066
NA PSPTO2548 clpB protein, putativechromosome CDS2812959 2604 + 0.572581
NA PSPTO2018 SirA protein. putativechromosome CDS2207025 255 + 0.576471
NA PSPTO5592 hypothetical proteinchromosome CDS6373114 882 - 0.53288
NA PSPTO4777 glutathione S-transferase family proteinchromosome CDS5418553 624 - 0.583333
NA PSPTO5325 glutaredoxinchromosome CDS6053247 252 - 0.59127
NA PSPTO0135 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS158162 675 - 0.6
NA PSPTO0381 conserved hypothetical proteinchromosome CDS421174 411 - 0.557178
NA PSPTO3343 glutathione S-transferase domain proteinchromosome CDS3778356 999 + 0.563564
NA PSPTO0895 hypothetical proteinchromosome CDS974837 507 - 0.502959
NA PSPTO5534 SPFH domain / Band 7 family proteinchromosome CDS6301280 1038 - 0.640655
NA PSPTO1065 DnaJ domain proteinchromosome CDS1162781 1122 - 0.553476
NA PSPTO2413 urease accessory protein UreE, putativechromosome CDS2661898 441 - 0.653061
NA PSPTO1120 conserved hypothetical proteinchromosome CDS1233676 423 - 0.583924
NA PSPTO0857 conserved hypothetical proteinchromosome CDS928074 705 - 0.578723
NA PSPTO1847 transcriptional repressor, putativechromosome CDS2017756 327 - 0.544343
NA PSPTO2236 hypothetical proteinchromosome CDS2470632 2274 + 0.580475
NA PSPTO0597 OsmC/Ohr family proteinchromosome CDS655482 423 + 0.562648
NA PSPTO2336 conserved hypothetical proteinchromosome CDS2590311 291 + 0.580756
NA PSPTO3000 papain cysteine protease family proteinchromosome CDS3373117 768 + 0.549479
NA PSPTO5363 DnaJ domain proteinchromosome CDS6095369 1014 - 0.63215
NA PSPTO1172 glutathione peroxidase family proteinchromosome CDS1287005 489 + 0.572597
NA PSPTO0606 conserved hypothetical proteinchromosome CDS662286 1071 - 0.59944
NA PSPTO1781 glutathione peroxidase family proteinchromosome CDS1950687 486 + 0.557613
NA PSPTO0703 glutathione S-transferase family proteinchromosome CDS756309 915 - 0.587978
NA PSPTO4161 glutaredoxin-related proteinchromosome CDS4687604 327 - 0.559633
NA PSPTO0934 trypsin domain proteinchromosome CDS1012077 1149 + 0.62054
NA PSPTO2285 conserved hypothetical proteinchromosome CDS2526778 552 - 0.572464
NA PSPTO1304 conserved hypothetical proteinchromosome CDS1433113 471 + 0.537155
NA PSPTO2928 DnaJ domain proteinchromosome CDS3291838 1674 + 0.580048
NA PSPTO4912 urease accessory protein, putativechromosome CDS5560239 573 + 0.663176
NA PSPTO3901 conserved hypothetical proteinchromosome CDS4416569 939 - 0.569755
NA PSPTO4221 serine protease, MucDchromosome CDS4754310 1440 - 0.597222
NA PSPTO4054 hypothetical proteinchromosome CDS4560424 813 + 0.592866
NA PSPTO0487 ABC transporter, permease proteinchromosome CDS533568 870 + 0.633333
NA PSPTO4398 glutathione S-transferase family proteinchromosome CDS4962492 783 - 0.619413
NA PSPTO1759 conserved hypothetical proteinchromosome CDS1931039 840 - 0.592857
NA PSPTO0235 conserved hypothetical proteinchromosome CDS256145 477 - 0.593291
NA PSPTO5317 antioxidant, AhpC/Tsa familychromosome CDS6045856 639 - 0.553991
NA PSPTO1144 lipoprotein, putativechromosome CDS1254153 819 + 0.571429
NA PSPTO3259 peptidase, U32 familychromosome CDS3683180 2007 + 0.606378
NA PSPTO4581 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS5177708 675 - 0.613333
NA PSPTO1510 conserved hypothetical proteinchromosome CDS1668746 675 + 0.641481
NA PSPTO5343 conserved hypothetical proteinchromosome CDS6074171 273 + 0.567766
NA PSPTO1689 lipoprotein, putativechromosome CDS1857514 408 - 0.625
NA PSPTO0451 conserved hypothetical proteinchromosome CDS494461 504 - 0.597222
aat PSPTO3350 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS3787395 690 + 0.608696
ahpC PSPTO3108 alkyl hydroperoxide reductase, subunit Cchromosome CDS3494562 564 - 0.565603
ahpF PSPTO3107 alkyl hydroperoxide reductase, subunit Fchromosome CDS3492875 1563 - 0.600768
cbpA PSPTO4897 curved-DNA-binding proteinchromosome CDS5546945 945 - 0.607407
ccmA PSPTO3635 heme exporter protein CcmAchromosome CDS4094721 639 - 0.649452
ccmB PSPTO3634 heme exporter protein CcmBchromosome CDS4094053 672 - 0.651786
ccmC PSPTO3633 heme exporter protein CcmCchromosome CDS4093194 804 - 0.618159
ccmE PSPTO3631 cytochrome c-type biogenesis protein CcmEchromosome CDS4092551 474 - 0.609705
ccmF PSPTO3630 cytochrome c-type biogenesis protein CcmFchromosome CDS4090581 1974 - 0.631206
ccoN PSPTO2004 cytochrome c oxidase, cbb3-type, subunit Ichromosome CDS2186515 1443 - 0.60499
ccoQ PSPTO2002 cytochrome c oxidase, cbb3-type, CcoQ subunitchromosome CDS2185710 192 - 0.609375
clpA PSPTO3353 ATP-dependent clp protease, ATP-binding subunit ClpAchromosome CDS3789289 2274 - 0.582234
clpB PSPTO0829 clpB proteinchromosome CDS895919 2565 + 0.59922
clpP-1 PSPTO3409 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS3847007 1146 - 0.619546
clpP-2 PSPTO3726 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS4208232 651 - 0.572965
clpX PSPTO3725 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS4206842 1284 - 0.570872
ctaG PSPTO5258 cytochrome c oxidase assembly proteinchromosome CDS5979094 489 + 0.576687
cycL PSPTO3628 cytochrome c-type biogenesis protein CycLchromosome CDS4089581 471 - 0.598726
cyoE PSPTO1329 protoheme IX farnesyltransferasechromosome CDS1459154 888 + 0.554054
cysT PSPTO0309 sulfate ABC transporter, permease protein CysTchromosome CDS336472 822 + 0.608272
dnaJ PSPTO4504 dnaJ proteinchromosome CDS5074273 1143 - 0.619423
dnaK PSPTO4505 dnaK proteinchromosome CDS5075741 1917 - 0.554512
dsbA PSPTO0341 thiol:disulfide interchange protein DsbAchromosome CDS371424 645 - 0.590698
dsbB PSPTO1324 disulfide oxidoreductasechromosome CDS1454243 510 + 0.590196
dsbC PSPTO1479 thiol:disulfide interchange protein DsbCchromosome CDS1623892 741 + 0.578947
dsbD PSPTO4858 thiol:disulfide interchange protein DsbDchromosome CDS5502597 1815 + 0.611019
dsbE PSPTO3629 thiol:disulfide interchange protein DsbEchromosome CDS4090048 537 - 0.599628
flgJ PSPTO1943 peptidoglycan hydrolase FlgJchromosome CDS2122810 1251 + 0.614708
fliS PSPTO1952 flagellar protein FliSchromosome CDS2138982 390 + 0.582051
ftsH PSPTO4497 cell division protein FtsHchromosome CDS5065022 1905 - 0.577953
gcp PSPTO0540 O-sialoglycoprotein endopeptidasechromosome CDS593605 1026 + 0.639376
glnD PSPTO1532 [protein-pII] uridylyltransferasechromosome CDS1689699 2697 - 0.600297
glnE PSPTO5004 glutamate-ammonia-ligase adenylyltransferasechromosome CDS5683352 2958 - 0.620352
groEL PSPTO4376 chaperonin, 60 kDachromosome CDS4938343 1644 - 0.57056
groES PSPTO4377 chaperonin, 10 kDachromosome CDS4940036 294 - 0.564626
grpE PSPTO4506 heat shock protein GrpEchromosome CDS5077768 564 - 0.572695
gsT PSPTO0929 glutathione S-transferasechromosome CDS1008356 621 + 0.566828
gstA PSPTO1365 glutathione S-transferasechromosome CDS1502901 627 + 0.577352
hflC PSPTO4939 hflC proteinchromosome CDS5598312 870 - 0.570115
hflK PSPTO4940 hflK proteinchromosome CDS5599181 1188 - 0.584175
hopI1 PSPTO4776 type III effector HopI1chromosome CDS5416707 1467 - 0.63122
hscA PSPTO1427 chaperone protein HscAchromosome CDS1565640 1863 + 0.615674
hscB PSPTO1426 co-chaperone Hsc20chromosome CDS1565074 522 + 0.582375
hscC PSPTO4294 chaperone protein HscCchromosome CDS4839316 1695 + 0.59646
hslO PSPTO0238 chaperonin, 33 kDachromosome CDS258156 903 + 0.632337
hslU PSPTO5141 heat shock protein HslVU, ATPase subunit HslUchromosome CDS5851651 1338 + 0.593423
hslV PSPTO5140 heat shock protein HslVchromosome CDS5851055 531 + 0.608286
htpG PSPTO2208 heat shock protein HtpGchromosome CDS2431992 1908 + 0.574948
htpX PSPTO1778 heat shock protein HtpXchromosome CDS1947589 888 - 0.578829
lon-1 PSPTO3724 ATP-dependent protease Lachromosome CDS4204235 2397 - 0.56821
lon-2 PSPTO4210 ATP-dependent protease Lachromosome CDS4743030 2418 + 0.600083
lsc-1 PSPTO1453 levansucrasechromosome CDS1593629 1296 - 0.5625
maiA PSPTO3554 maleylacetoacetate isomerasechromosome CDS4010949 636 - 0.600629
msrA PSPTO0405 peptide methionine sulfoxide reductasechromosome CDS448752 648 - 0.58642
nrdH PSPTO1264 glutaredoxin NrdHchromosome CDS1385856 213 - 0.577465
ohr PSPTO1767 organic hydroperoxide resistance proteinchromosome CDS1938022 420 - 0.611905
osmC PSPTO0152 osmotically inducible proteinchromosome CDS174938 432 - 0.56713
pcm PSPTO1563 protein-L-isoaspartate O-methyltransferasechromosome CDS1725268 636 + 0.628931
pilD PSPTO0924 type IV pilus prepilin peptidase PilDchromosome CDS1003193 873 - 0.592211
pnlA PSPTO4283 pectin lyasechromosome CDS4822443 1245 - 0.594378
ppiA PSPTO4090 peptidyl-prolyl cis-trans isomerase Achromosome CDS4601797 564 + 0.565603
ppiB PSPTO3744 peptidyl-prolyl cis-trans isomerase Bchromosome CDS4231095 504 + 0.543651
ppiC-1 PSPTO3028 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3403680 282 + 0.567376
ppiC-2 PSPTO3034 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3411226 276 + 0.586957
pqqF PSPTO0514 coenzyme PQQ synthesis protein Fchromosome CDS561106 2340 - 0.618376
radA PSPTO4640 DNA repair protein RadAchromosome CDS5243215 1368 - 0.625731
smpB PSPTO4515 SsrA-binding proteinchromosome CDS5085014 483 + 0.565217
sppA PSPTO3838 signal peptide peptidase SppA, 36K typechromosome CDS4343921 999 - 0.570571
sspA PSPTO4424 stringent starvation protein Achromosome CDS4992024 618 - 0.567961
surA PSPTO0553 peptidyl-prolyl cis-trans isomerase SurAchromosome CDS606454 1287 - 0.584305
tig PSPTO3727 trigger factorchromosome CDS4208965 1311 - 0.559878
tpx PSPTO2752 thiol peroxidasechromosome CDS3061058 501 + 0.580838
trbB PSPTOA0067 trbB proteinpDC3000A CDS68297 1086 + 0.60221
trx-1 PSPTO0686 thioredoxinchromosome CDS741199 873 - 0.593356
trx-2 PSPTO5243 thioredoxinchromosome CDS5963144 330 - 0.548485
trxA PSPTO4260 thioredoxinchromosome CDS4800613 330 - 0.487879
trxB PSPTO1178 thioredoxin reductasechromosome CDS1293002 963 + 0.603323
ureD-1 PSPTO2408 urease accessory protein UreDchromosome CDS2657199 771 - 0.658885
ureD-2 PSPTO4890 urease accessory protein UreDchromosome CDS5541025 846 + 0.62766
ureE PSPTO4909 urease accessory protein UreEchromosome CDS5558405 501 + 0.59481
ureF-1 PSPTO2412 urease accessory protein UreFchromosome CDS2661170 732 - 0.653005
ureF-2 PSPTO4910 urease accessory protein UreFchromosome CDS5558902 675 + 0.638519
ureG-1 PSPTO2409 urease accessory protein UreGchromosome CDS2658053 663 - 0.631976
ureG-2 PSPTO4911 urease accessory protein UreGchromosome CDS5559597 618 + 0.601942
yegD PSPTO4898 heat shock protein YegDchromosome CDS5548200 1266 + 0.603476
yhgI PSPTO2735 yhgI proteinchromosome CDS3038310 594 + 0.577441