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2024-05-03 18:17:47

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 155

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa2247 putative Peptidylprolyl isomerasechromosome I CDS2385501 621 + 0.394525
NA PSHAa1033 putative ATP-dependent proteasechromosome I CDS1069679 2424 + 0.429868
NA PSHAa1371 putative peptidase M13 family proteinchromosome I CDS1432758 2082 - 0.442363
NA PSHAb0381 putative osmC-like proteinchromosome II CDS446653 387 + 0.390181
NA PSHAa0524 conserved protein of unknown functionchromosome I CDS540313 1149 - 0.412533
NA PSHAa2342 putative thioredoxin-like proteinchromosome I CDS2486161 789 - 0.365019
NA PSHAa2578 conserved protein of unknown functionchromosome I CDS2724292 423 - 0.397163
NA PSHAa1842 Cytochrome c oxidase, cbb3-type, subunit Ichromosome I CDS1938295 1434 + 0.415621
NA PSHAa1115 conserved protein of unknown functionchromosome I CDS1161175 450 + 0.368889
NA PSHAb0131 putative thioredoxin family proteinchromosome II CDS163510 462 + 0.385281
NA PSHAb0166 conserved protein of unknown function; putative integral inner membrane proteinchromosome II CDS207531 639 + 0.380282
NA PSHAa2860 conserved protein of unknown functionchromosome I CDS3034660 576 + 0.411458
NA PSHAa0368 glutaredoxin 3 GrxCchromosome I CDS385042 270 + 0.42963
NA PSHAb0122 putative glutathione S-transferasechromosome II CDS149297 618 - 0.391586
NA PSHAa2745 Peptidase, M13 family (lipoprotein)chromosome I CDS2915701 2073 - 0.410999
NA PSHAa1188 MotA/TolQ/ExbB proton channel family proteinchromosome I CDS1235530 1365 + 0.404396
NA PSHAa1722 putative aminoacyl-tRNA-protein transferasechromosome I CDS1801666 624 + 0.387821
NA PSHAa1831 conserved protein of unknown function ; putative AhpC-TSA familychromosome I CDS1923832 651 + 0.380952
NA PSHAa0759 putative peroxiredoxin/glutaredoxin family proteinchromosome I CDS792934 729 - 0.414266
NA PSHAa0526 putative glutathione S-transferasechromosome I CDS542282 654 + 0.412844
NA PSHAa0110 putative DnaJ-class molecular chaperonechromosome I CDS115260 528 - 0.390152
NA PSHAa2192 putative Glutathione S-transferasechromosome I CDS2329388 840 + 0.438095
NA PSHAa1666 conserved protein of unknown functionchromosome I CDS1736653 201 - 0.353234
NA PSHAa0062 glutathione peroxidase possibly involved in repair of phospholipid hydroperoxideschromosome I CDS64576 492 - 0.400407
NA PSHAa0068 putative serine secreted endoprotease, subtilase familychromosome I CDS68256 3465 + 0.420779
NA PSHAa0555 conserved protein of unknown functionchromosome I CDS570931 273 + 0.373626
NA PSHAb0017 putative Glutathione S-transferase family proteinchromosome II CDS21484 675 + 0.431111
NA PSHAa1981 putative Peptidyl-prolyl cis-trans isomerase (PPIase)chromosome I CDS2081190 897 - 0.402453
NA PSHAb0272 putative membrane proteinchromosome II CDS316441 954 - 0.406709
NA PSHAa2489 putative glutathione S-transferase enzyme with thioredoxin-like domainchromosome I CDS2640128 579 + 0.376511
NA PSHAa1034 Peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome I CDS1072105 477 + 0.412998
NA PSHAa1763 conserved protein of unknown function ; putative urease accessory protein (ureJ)chromosome I CDS1848473 585 + 0.461538
NA PSHAa1441 Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase)chromosome I CDS1518306 669 - 0.405082
NA PSHAa0634 putative Glutaredoxinchromosome I CDS655877 360 + 0.375
NA PSHAa0830 putative cytochrome c-type biogenesis proteinchromosome I CDS858736 1242 + 0.407407
NA PSHAb0498 putative proteasechromosome II CDS563384 705 + 0.404255
NA PSHAa1372 putative ABC transporter, ATP-binding proteinchromosome I CDS1435031 1791 - 0.428252
NA PSHAa0478 putative heat shock proteinchromosome I CDS496544 378 + 0.42328
NA PSHAb0103 putative glutathione S-transferasechromosome II CDS122413 951 - 0.44795
NA PSHAa1511 putative orphan protein ; putative DNA-binding proteinchromosome I CDS1586944 507 - 0.473373
NA PSHAa2359 putative phage integrase familychromosome I CDS2504175 1797 - 0.336672
NA PSHAb0124 putative molecular chaperonechromosome II CDS151474 1206 + 0.41791
NA PSHAa2193 putative orphan proteinchromosome I CDS2330303 456 - 0.403509
NA PSHAb0349 putative TonB-dependent receptor protease/peptidasechromosome II CDS405190 2883 + 0.382241
NA PSHAa2487 glutathione peroxidase precursorchromosome I CDS2639124 576 + 0.383681
NA PSHAb0347 putative Peptidyl-prolyl cis-trans isomerasechromosome II CDS403782 741 + 0.37247
NA PSHAa0972 putative peptidasechromosome I CDS1005918 2724 - 0.395742
NA PSHAa2309 putative prolyl 4-hydroxylase, alpha subunit domainchromosome I CDS2451419 531 + 0.387947
NA PSHAa2866 putative Cytochrome oxidase assembly proteinchromosome I CDS3039516 990 - 0.415152
NA PSHAa1756 putative urease accessory protein UreDchromosome I CDS1842993 909 + 0.479648
NA PSHAa0198 conserved protein of unknown functionchromosome I CDS209726 414 + 0.403382
NA PSHAa0327 conserved protein of unknown functionchromosome I CDS342908 726 + 0.378788
NA PSHAa1224 conserved protein of unknown functionchromosome I CDS1271567 798 + 0.448622
NA PSHAa2176 putative heat shock protein (Hsp70 family), actin-like ATPase domainchromosome I CDS2311889 1317 - 0.410782
NA PSHAa2649 Serine protease precursorchromosome I CDS2802805 2136 + 0.452715
NA PSHAa2870 Cytochrome c oxidase assembly protein coxGchromosome I CDS3042876 531 - 0.410546
NA PSHAb0519 conserved protein of unknown functionchromosome II CDS586110 615 + 0.404878
NA PSHAa1253 Glutathione peroxidasechromosome I CDS1307881 495 - 0.363636
NA PSHAa1216 conserved protein of unknown function with thioredoxin-like domainchromosome I CDS1263838 339 + 0.371681
NA PSHAa2865 Polyprenyltransferasechromosome I CDS3038546 930 - 0.404301
NA PSHAb0100 putative orphan proteinchromosome II CDS119440 1005 - 0.3801
aat PSHAa1721 leucyl, phenylalanyl-tRNA-protein transferasechromosome I CDS1800876 717 + 0.447699
ahpC PSHAa2650 Peroxiredoxin, AhpC/Tsa familychromosome I CDS2805011 474 - 0.415612
ahpC PSHAb0265 Alkyl hydroperoxide reductase subunit C (Alkyl hydroperoxide reductase protein C22) (SCRP-23) (Sulfate starvation-induced protein 8)(SSI8)chromosome II CDS310987 570 + 0.414035
ahpCB PSHAa0839 peroxiredoxin 2 (Thioredoxin peroxidase 1) (Thioredoxin-dependent peroxide reductase 1) (Thiol-specific antioxidant protein) (TSA) (PRP)chromosome I CDS867102 606 + 0.420792
ahpF PSHAb0266 Alkyl hydroperoxide reductase subunit F (Alkyl hydroperoxide reductase F52A protein)chromosome II CDS311707 1572 + 0.43257
bcpA PSHAa1122 putative peroxiredoxinchromosome I CDS1165884 480 - 0.414583
cbpA PSHAa2878 curved DNA-binding protein, co-chaperone of DnaK (Hsp40 family)chromosome I CDS3049462 966 - 0.423395
ccmA PSHAa0822 heme exporter protein A, ABC superfamily (Cytochrome c-type biogenesis ATP-binding protein ccmA)chromosome I CDS853095 534 + 0.404494
ccmB PSHAa0823 heme exporter protein B, ABC superfamily (Cytochrome c-type biogenesis protein ccmB)chromosome I CDS853628 687 + 0.403202
ccmC PSHAa0824 heme exporter protein C (Cytochrome c-type biogenesis protein ccmC)chromosome I CDS854316 738 + 0.421409
ccmE PSHAa0826 cytochrome c-type biogenesis protein ccmEchromosome I CDS855256 480 + 0.4125
ccmF PSHAa0827 cytochrome c-type biogenesis protein ccmFchromosome I CDS855738 1971 + 0.422628
ccmG PSHAa0828 thiol:disulfide interchange protein dsbE (cytochrome c biogenesis protein ccmG)chromosome I CDS857705 570 + 0.417544
ccmH PSHAa0829 cytochrome c-type biogenesis protein CcmHchromosome I CDS858274 462 + 0.398268
clpA PSHAa1724 ATP-dependent specificity subunit of clpA-clpP serine proteasechromosome I CDS1802810 2262 - 0.420424
clpB PSHAa0935 ATP-dependent protease, Hsp 100, part of multi-chaperone system with DnaK, DnaJ, and GrpEchromosome I CDS962980 2577 + 0.421808
clpP PSHAa2062 ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti)(Heat shock protein F21.5)chromosome I CDS2180836 618 - 0.399676
clpX PSHAa2061 ATPase, chaperone subunit of serine proteasechromosome I CDS2179420 1284 - 0.390187
cydC PSHAa2022 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal))chromosome I CDS2136580 1740 + 0.41954
cydD PSHAa2021 cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal))chromosome I CDS2134893 1695 + 0.4059
cyoE PSHAa2227 protoheme IX farnesyltransferase (Heme O synthase)chromosome I CDS2367809 885 - 0.432768
degQ PSHAa2536 periplasmic serine endoproteasechromosome I CDS2687243 1353 + 0.429416
degS PSHAa2537 periplasmic serine endoproteasechromosome I CDS2688695 1083 + 0.409049
dipZ PSHAa0263 thiol:disulfide interchange protein[Precursor] (Protein-disulfide reductase) (Disulfide reductase) (C-type cytochrome biogenesis protein cycZ) (Innerchromosome I CDS275826 1812 + 0.40287
djlA PSHAa2629 DnaJ-like protein DjlAchromosome I CDS2781236 858 - 0.388112
dnaJ PSHAb0358 Chaperone protein dnaJ (Heat shock protein J) (HSP40), co-chaperone with DnaKchromosome II CDS417231 1143 + 0.445319
dnaK PSHAb0357 Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)chromosome II CDS415125 1917 + 0.422535
dsbA PSHAa0248 periplasmic protein, disulfide bond formation,chromosome I CDS260255 624 + 0.349359
dsbB PSHAa0837 disulfide bond formation protein B (Disulfide oxidoreductase)chromosome I CDS865148 519 - 0.423892
dsbC PSHAa0515 disulfide bond isomerase, periplasmic; chaperone; activated by DsbD; homodimericchromosome I CDS528904 702 + 0.424501
dsbG PSHAb0164 putative disulfide isomerase, thiol-disulfide oxidase, periplasmicchromosome II CDS203443 774 + 0.447028
fklB PSHAa1414 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)chromosome I CDS1484819 621 + 0.42029
fkpA PSHAa2901 putative periplasmic peptidyl-prolyl cis-trans isomerasechromosome I CDS3071069 753 - 0.378486
fkpB PSHAa0920 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome I CDS949599 441 + 0.417234
flgA PSHAa0765 putative flagellar biosynthesis; assembly of basal-body periplasmic P-ringchromosome I CDS797721 708 - 0.385593
flgJ PSHAa0777 putative flagellar biosynthesischromosome I CDS807725 996 + 0.414659
flgN PSHAa0763 putative flagellar biosynthesis chaperonechromosome I CDS796900 432 - 0.363426
fliJ PSHAa0796 flagellar proteinchromosome I CDS828771 387 + 0.387597
fliS PSHAa0786 putative flagellar biosynthesis proteinchromosome I CDS817432 402 - 0.368159
ftsH PSHAa0870 cell division protease ftsH, ATP-dependent zinc-metallo proteasechromosome I CDS895833 1893 + 0.424723
gcp PSHAa2304 Gcp glycoprotease homologchromosome I CDS2447541 1014 - 0.45858
glnD PSHAa2038 uridylyltransferasechromosome I CDS2152922 2619 + 0.421153
glnE PSHAa2595 adenylyl transferase for glutamine synthetasechromosome I CDS2739648 2796 - 0.403076
groL PSHAa0259 60 kDa chaperonin (Protein Cpn60) (groEL protein)chromosome I CDS272763 1644 - 0.426399
groS PSHAa0260 10 kDa chaperonin (Protein Cpn10) (groES protein)chromosome I CDS274455 288 - 0.409722
grpE PSHAa1222 Hsp 24 DnaK nucleotide exchange factor; probable member of the DnaK/DnaJ/GrpE foldase complexchromosome I CDS1269324 612 + 0.421569
grxA PSHAa0991 glutaredoxin 1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome I CDS1026866 264 - 0.382576
grxC PSHAb0031 glutaredoxin 3 (Grx3)chromosome II CDS37447 261 + 0.375479
hflC PSHAa0274 HflC; HflKC is a membrane-associated complexchromosome I CDS287934 879 + 0.408419
hflK PSHAa0273 HflK complex with HflCchromosome I CDS286759 1170 + 0.408547
hscA PSHAa2667 chaperone (Hsp70 family), involved in assembly of Fe-S clusters (involved in the maturation of iscU)chromosome I CDS2821399 1863 - 0.439077
hscB PSHAa2668 co-chaperone protein Hsc20, involved in assembly of Fe-S clusters (specific for IscU)chromosome I CDS2823314 540 - 0.414815
hslO PSHAa0229 heat shock protein 33, redox regulated chaperonechromosome I CDS243346 846 - 0.391253
hslU PSHAa2731 ATPase component of the HslUV protease, also functions as molecular chaperonechromosome I CDS2896351 1329 + 0.417607
hslV PSHAa2730 peptidase component of the HslUV proteasechromosome I CDS2895821 519 + 0.470135
htpG PSHAa1207 chaperone protein htpGchromosome I CDS1252344 1914 + 0.410136
htpX PSHAa1605 zinc metalloprotease HtpX, membrane-bound with cytosolic active site; heat shock proteinchromosome I CDS1667625 882 - 0.446712
ibpA PSHAa0993 small heat shock proteinchromosome I CDS1028216 447 + 0.422819
ibpB PSHAa0992 small heat shock proteinchromosome I CDS1027479 447 + 0.400447
lon PSHAa2060 DNA-binding ATP-dependent protease La; heat shock K-proteinchromosome I CDS2176910 2361 - 0.421855
maiA PSHAb0337 Maleylacetoacetate isomerase (MAAI) (Glutathione S-transferase zeta 1) (GSTZ1-1)chromosome II CDS389084 633 - 0.399684
mrsAB PSHAa1243 putative peptide methionine sulfoxide reductasechromosome I CDS1296448 510 + 0.386275
msrAA PSHAa1583 Peptide methionine sulfoxide reductase msrA 2 (Protein-methionine-S-oxide reductase 2) (Peptide Met(O) reductase 2)chromosome I CDS1647470 702 + 0.384615
msrAB PSHAa2274 protein-methionine-S-oxide reductase (Peptide Met(O) reductase)chromosome I CDS2419677 537 + 0.433892
msrB PSHAa1087 Peptide methionine-R-sulfoxide reductase, MsrB protein (PilB protein)chromosome I CDS1124628 441 + 0.430839
msrC PSHAa1444 probable secreted protein-methione-sulfoxide reductase with methionine-S-sulfoxide and methionine-R-sulfoxide reductase activity; putative signal peptchromosome I CDS1520939 1284 + 0.419003
osmC PSHAb0180 putative organic hydroperoxide resistance proteinchromosome II CDS219618 429 + 0.438228
osmC PSHAa2202 osmotically inducible protein Cchromosome I CDS2338114 432 + 0.398148
pcm PSHAa0688 L-isoaspartate protein carboxylmethyltransferase type IIchromosome I CDS714008 639 + 0.458529
pilD PSHAa0380 Type 4 prepilin-like proteins leader peptide processing enzymechromosome I CDS395803 876 - 0.416667
porA PSHAa0249 periplasmic protein, disulfide bond formationchromosome I CDS260899 639 + 0.386541
ppiB PSHAa2066 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome I CDS2186804 492 + 0.384146
ppiC PSHAa2488 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome I CDS2639786 282 + 0.41844
ppiCB PSHAb0308 peptidyl-prolyl cis-trans isomerase C (rotamase C)chromosome II CDS359737 279 + 0.383513
ppiD PSHAa2058 peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)chromosome I CDS2174358 1902 - 0.406414
queC PSHAa1117 queC proteinchromosome I CDS1162493 648 + 0.429012
radA PSHAa0663 putative DNA repair protein radA (DNA repair protein sms)chromosome I CDS690446 1386 + 0.41342
sirA PSHAa0009 small ubiquitous RNA-binding proteinchromosome I CDS10927 240 - 0.475
slyDA PSHAa0721 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)chromosome I CDS754950 486 - 0.415638
slyDB PSHAa0292 peptidyl-prolyl cis-trans isomerase, FkbP familychromosome I CDS306021 495 - 0.440404
smpB PSHAa0841 SsrA-binding protein (small protein B)chromosome I CDS870720 480 - 0.395833
sohB PSHAa1345 protease (may metabolize cleaved signal peptides)chromosome I CDS1393901 1020 + 0.358824
sppA PSHAa1409 protease IV, a signal peptide peptidasechromosome I CDS1478457 1866 - 0.405681
sspA PSHAa2527 stringent starvation protein A, regulator of transcriptionchromosome I CDS2680229 627 - 0.425837
surA PSHAa2633 peptidyl-prolyl cis-trans isomerase (PPIase)chromosome I CDS2786200 1296 + 0.406636
tig PSHAa2063 peptidyl-prolyl cis/trans isomerase (trigger factor), molecular chaperone involved in cell divisionchromosome I CDS2181618 1305 - 0.42069
tpx PSHAa1209 putative periplasmic thiol peroxidasechromosome I CDS1255140 582 - 0.391753
trxA PSHAa0113 thioredoxin 1, redox factorchromosome I CDS120291 327 - 0.391437
trxB PSHAa1720 thioredoxin reductase, FAD/NAD(P)-bindingchromosome I CDS1799828 951 + 0.44795
ureE PSHAa1760 putative urease accessory chaperone proteinchromosome I CDS1846535 513 + 0.469786
ureF PSHAa1761 putative urease accessory protein UreFchromosome I CDS1846947 798 + 0.488722
ureG PSHAa1762 urease accessory proteinchromosome I CDS1847775 639 + 0.41784
yegQ PSHAb0145 putative peptidase YegQchromosome II CDS179892 1407 + 0.423596
yifB PSHAa0130 putative regulatorchromosome I CDS139196 1512 + 0.451058