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2024-05-15 10:07:11

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 53

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Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LSA1771 Putative type IV leader peptidase (Bacterial type II secretion system)SubName: Full=Putative type IV leader peptidase (Bacterial type II secretion system); chromosome CDS1742507 690 + 0.436232
NA LSA0119 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS110976 441 + 0.408163
NA LSA0530 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS549136 525 - 0.407619
NA LSA1109 Putative ABC-type system involved in Fe-S cluster assembly (sufB homolog)SubName: Full=Putative ABC-type system involved in Fe-S cluster assembly (SufB homolog); chromosome CDS1100161 1404 - 0.446581
NA LSA1540 Hypothetical extracellular protein precursorSubName: Full=Hypothetical extracellular protein; chromosome CDS1509980 918 + 0.398693
NA LSA0499 Hypothetical integral membrane proteinSubName: Full=Hypothetical integral membrane protein; chromosome CDS518311 1134 + 0.405644
NA LSA1309 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1282468 375 + 0.426667
NA LSA1683 Putative DNA repair protein RadARecName: Full=DNA repair protein radA; chromosome CDS1664119 1365 - 0.449084
NA LSA1503 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1474756 555 + 0.378378
NA LSA0349 Putative O-sialoglycoprotein metallo-endopeptidase (M22 family)SubName: Full=Putative O-sialoglycoprotein metallo-endopeptidase (M22 family); chromosome CDS349739 726 + 0.450413
NA LSA0334 Hypothetical extracellular protein precursorSubName: Full=Hypothetical extracellular protein; chromosome CDS338874 345 + 0.411594
NA LSA0351 Putative O-sialoglycoprotein metallo-endopeptidase (M22 family)RecName: Full=tRNA N6-adenosine threonylcarbamoyltransferase; EC=2.6.99.4; AltName: Full=N6-L-threonylcarbamoyladenine synthase; Short=t(6)A synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaD; chromosome CDS351004 1035 + 0.464734
NA LSA0436 Putative peptidylprolyl isomerase (Peptidylprolyl cis-trans isomerase) (PPIase)SubName: Full=Putative peptidylprolyl isomerase (Peptidylprolyl cis-trans isomerase) (PPIase); EC=5.2.1.8; chromosome CDS443641 585 + 0.408547
NA LSA0403 Putative thioredoxin reductaseRecName: Full=Ferredoxin--NADP reductase 1; Short=FNR 1; Short=Fd-NADP(+) reductase 1; EC=1.18.1.2; chromosome CDS412250 987 + 0.452888
NA LSA0552 Organic hydroperoxide resistance proteinSubName: Full=Organic hydroperoxide resistance protein; chromosome CDS571267 408 + 0.426471
NA LSA0050 Putative molecular chaperone, small heat shock protein, Hsp20 familySubName: Full=Putative molecular chaperone, small heat shock protein, Hsp20 family; chromosome CDS45540 441 + 0.390023
NA LSA1112 Putative ABC-type system involved in Fe-S cluster assembly (SufB homolog)SubName: Full=Putative ABC-type system involved in Fe-S cluster assembly (SufB homolog); chromosome CDS1103255 1305 - 0.435249
NA LSA0865 Putative protein methionine sulfoxide reductaseRecName: Full=Peptide methionine sulfoxide reductase MsrB; EC=1.8.4.12; AltName: Full=Peptide-methionine (R)-S-oxide reductase; chromosome CDS854459 432 + 0.423611
NA LSA0112 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS105138 477 + 0.345912
NA LSA1113 Putative ABC-type ATP-binding protein involved in Fe-S cluster assembly (SufC homolog)SubName: Full=Putative ABC-type ATP-binding protein involved in Fe-S cluster assembly (SufC homolog); chromosome CDS1104572 783 - 0.394636
clpB LSA1040 Chaperone ClpBSubName: Full=Chaperone ClpB; chromosome CDS1030369 2595 - 0.403468
clpC LSA1779 ATPase/chaperone ClpC, putative specificity factor for ClpP proteaseSubName: Full=ATPase/chaperone ClpC, putative specificity factor for ClpP protease; chromosome CDS1755046 2469 - 0.444309
clpE LSA1465 ATPase/chaperone ClpE, putative specificity factor for ClpP proteaseSubName: Full=ATPase/chaperone ClpE, putative specificity factor for ClpP protease; chromosome CDS1440481 2166 + 0.427516
clpL LSA0207 ATPase/chaperone ClpL, putative specificity factor for ClpP proteaseSubName: Full=ATPase/chaperone ClpL, putative specificity factor for ClpP protease; chromosome CDS199842 2124 + 0.395009
clpP LSA0531 ATP-dependent Clp protease, proteolytic subunit ClpPRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS549884 585 - 0.423932
clpX LSA1061 ATP-dependent Clp protease, ATP-binding subunit ClpXRecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX; chromosome CDS1054588 1254 - 0.409888
dnaJ LSA1235 Chaperone protein DnaJ (heat-shock protein Hsp40)RecName: Full=Chaperone protein DnaJ; chromosome CDS1213558 1152 - 0.453993
dnaK LSA1236 Chaperone protein DnaK (heat-shock protein Hsp70)RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70; chromosome CDS1214829 1842 - 0.39848
ftsH LSA1597 ATP-dependent zinc metalloendopeptidase FtsH (cell division protein FtsH)RecName: Full=ATP-dependent zinc metalloprotease FtsH; EC=3.4.24.-; chromosome CDS1581251 2091 - 0.422764
groL LSA0359 Chaperonin GroEL (60 kDa chaperonin) (Protein Cpn60)RecName: Full=60 kDa chaperonin; AltName: Full=GroEL protein; AltName: Full=Protein Cpn60; chromosome CDS358702 1626 + 0.421894
groS LSA0358 Co-chaperonin GroES (10 kD chaperonin) (Protein Cpn10)RecName: Full=10 kDa chaperonin; AltName: Full=GroES protein; AltName: Full=Protein Cpn10; chromosome CDS358364 285 + 0.414035
grpE LSA1237 Co-chaperone protein GrpERecName: Full=Protein GrpE; AltName: Full=HSP-70 cofactor; chromosome CDS1216707 603 - 0.394693
hslO LSA1596 Molecular chaperone, Hsp33 familyRecName: Full=33 kDa chaperonin; AltName: Full=Heat shock protein 33 homolog; Short=HSP33; chromosome CDS1580278 879 - 0.428896
hslU LSA0984 ATP-dependent Hsl protease, ATP-binding subunit HslURecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU; chromosome CDS977346 1428 - 0.416667
hslV LSA0985 ATP-dependent Hsl protease, proteolytic subunit HslVSubName: Full=ATP-dependent Hsl protease, proteolytic subunit HslV; EC=3.4.25.-; chromosome CDS978777 546 - 0.417582
htpX LSA1618 Membrane metalloprotease, HtpX homologRecName: Full=Protease HtpX homolog; EC=3.4.24.-; chromosome CDS1605249 900 - 0.456667
htrA LSA0082 Serine protease HtrA precursor, Trypsin familySubName: Full=Serine protease HtrA, Trypsin family; EC=3.4.21.-; chromosome CDS78181 1224 + 0.41585
mecA LSA1448 similar to MecA, putative adapter protein for Clp proteaseRecName: Full=Adapter protein MecA; chromosome CDS1421409 690 - 0.349275
msrA LSA0866 Protein methionine sulfoxide reductaseRecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; EC=1.8.4.11; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; chromosome CDS854890 519 + 0.44316
nrdG LSA1458 Anaerobic ribonucleotide reductase activator proteinRecName: Full=Anaerobic ribonucleoside-triphosphate reductase-activating protein; EC=1.97.1.-; chromosome CDS1432266 582 - 0.424399
nrdH LSA0942 Ribonucleotide reductase, NrdH-redoxinSubName: Full=Ribonucleotide reductase, NrdH-redoxin; chromosome CDS930023 231 - 0.367965
pepO LSA0053 Endopeptidase OSubName: Full=Endopeptidase O; EC=3.4.24.-; chromosome CDS48377 1896 + 0.424051
pflA LSA0973 Formate C-acetyltransferase activating enzyme (Pyruvate formate-lyase activating enzyme)SubName: Full=Formate C-acetyltransferase activating enzyme (Pyruvate formate-lyase activating enzyme); EC=1.97.1.4; chromosome CDS962538 810 - 0.385185
prtM LSA0626 Protein maturation protease precursor (peptidylprolyl isomerase)RecName: Full=Foldase protein PrsA; EC=5.2.1.8; Flags: Precursor; chromosome CDS629874 912 - 0.362939
smpB LSA1410 t/mRNA binding protein (SsrA RNA binding protein)RecName: Full=SsrA-binding protein; chromosome CDS1378262 471 - 0.401274
tig LSA1062 Trigger factorRecName: Full=Trigger factor; Short=TF; EC=5.2.1.8; AltName: Full=PPIase; chromosome CDS1056051 1296 - 0.381173
tpx LSA0104 Thiol peroxidase (Hydroperoxide reductase, Peroxiredoxin)SubName: Full=Thiol peroxidase (Hydroperoxide reductase, Peroxiredoxin); EC=1.11.1.-; chromosome CDS99949 495 - 0.412121
trxA1 LSA0218 ThioredoxinRecName: Full=Thioredoxin; chromosome CDS212784 318 + 0.383648
trxA2 LSA0307 ThioredoxinRecName: Full=Thioredoxin; chromosome CDS311169 336 + 0.354167
trxA3 LSA0394 ThioredoxinRecName: Full=Thioredoxin; chromosome CDS403233 312 + 0.384615
trxA4 LSA0634 ThioredoxinSubName: Full=Thioredoxin; chromosome CDS636150 321 + 0.370717
trxB1 LSA0435 Thioredoxin reductaseRecName: Full=Ferredoxin--NADP reductase 2; Short=FNR 2; Short=Fd-NADP(+) reductase 2; EC=1.18.1.2; chromosome CDS442510 987 - 0.448835
trxB2 LSA0520 Thioredoxin reductaseRecName: Full=Thioredoxin reductase; EC=1.8.1.9; chromosome CDS536198 921 + 0.449511