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2024-05-03 04:20:29

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 144

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSO_1583 putative methylasechromosome CDS1663456 1833 + 0.430987
NA SSO_1901 antitermination protein Q-like proteinchromosome CDS1997634 822 - 0.491484
NA SSO_1516 conserved hypothetical proteinchromosome CDS1592312 1110 + 0.55045
NA SSO_0243 conserved hypothetical proteinchromosome CDS267548 300 - 0.573333
NA SSO_2147 conserved hypothetical proteinchromosome CDS2251792 1005 + 0.555224
NA SSO_1679 putative transferasechromosome CDS1783919 618 - 0.470874
NA SSO_1260 antitermination protein Qchromosome CDS1337335 855 - 0.488889
NA SSO_0877 putative protease/scaffold proteinchromosome CDS931489 1146 + 0.5
NA SSO_3134 conserved hypothetical proteinchromosome CDS3295114 915 + 0.533333
NA SSO_2427 putative minor capsid protein precursorchromosome CDS2562275 1281 - 0.605777
NA SSO_0959 putative ATP-dependent proteasechromosome CDS1034632 1761 - 0.518455
NA SSO_0242 putative ATP-dependent Clp proteinase ATP-binding chainchromosome CDS265070 2460 - 0.595528
aat SSO_0886 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS940547 705 - 0.534752
ahpC SSO_0557 alkyl hydroperoxide reductase, C22 subunitchromosome CDS598022 564 + 0.498227
ahpF SSO_0558 alkyl hydroperoxide reductase, F52a subunitchromosome CDS598726 1596 + 0.526316
bcp SSO_2561 bacterioferritin comigratory proteinchromosome CDS2702531 471 + 0.494692
btuE SSO_1448 vitamin B12 transportchromosome CDS1522547 552 + 0.494565
cbpA SSO_1008 curved DNA-binding proteinchromosome CDS1082249 921 - 0.529859
ccmA SSO_2259 ATP binding protein of heme exporter Achromosome CDS2371621 618 - 0.558252
ccmB SSO_2258 heme exporter protein B, cytochrome c-type biogenesis proteinchromosome CDS2370962 663 - 0.558069
ccmC SSO_2257 heme exporter protein Cchromosome CDS2370183 738 - 0.552846
ccmE SSO_2255 cytochrome c biogenesis, possible subunit of a heme lyasechromosome CDS2369501 480 - 0.535417
ccmF SSO_2254 cytochrome c-type biogenesis proteinchromosome CDS2367561 1944 - 0.570988
ccmH SSO_2252 possible subunit of heme lyasechromosome CDS2365958 1053 - 0.541311
clpA SSO_0883 ATP-binding component of serine proteasechromosome CDS937021 2277 + 0.527888
clpB SSO_2718 heat shock proteinchromosome CDS2877856 2574 - 0.513597
clpP SSO_0420 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS445474 624 + 0.511218
clpX SSO_0421 ATP-dependent specificity component of clpP serine protease, chaperonechromosome CDS446223 1275 + 0.518431
cydC SSO_0887 ATP-binding component of cytochrome-related transportchromosome CDS941293 1722 - 0.538328
cydD SSO_0888 ATP-binding component of cytochrome-related transport, Zn sensitivechromosome CDS943015 1767 - 0.532541
cyoE SSO_0411 protoheme IX farnesyltransferasechromosome CDS435610 891 - 0.537598
cysU SSO_2513 sulfate, thiosulfate transport system permease T proteinchromosome CDS2650750 834 - 0.551559
degQ SSO_3375 serine endoproteasechromosome CDS3552436 1368 + 0.52193
degS SSO_3376 proteasechromosome CDS3553893 1068 + 0.529026
djlA SSO_0063 putative DNA binding proteinchromosome CDS66700 816 + 0.528186
dnaJ SSO_0015 chaperone with DnaKchromosome CDS14944 1131 + 0.549072
dnaK SSO_0014 chaperone Hsp70chromosome CDS12939 1917 + 0.511215
dsbA SSO_4032 protein disulfide isomerase Ichromosome CDS4260410 627 + 0.478469
dsbB SSO_1177 reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella.chromosome CDS1255775 531 - 0.525424
dsbC SSO_3046 protein disulfide isomerase IIchromosome CDS3207918 711 - 0.483826
dsbD SSO_4319 thiol:disulfide interchange proteinchromosome CDS4589079 1698 - 0.537691
dsbE SSO_2253 disulfide oxidoreductasechromosome CDS2367007 558 - 0.548387
dsbG SSO_0556 thiol:disulfide interchange proteinchromosome CDS596892 759 - 0.472991
fdhE SSO_4060 FdhEchromosome CDS4293789 930 - 0.554839
fkpA SSO_3477 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3638606 813 - 0.483395
flgA SSO_1092 flagellar protein for assembly of basal-body periplasmic P ringchromosome CDS1171509 660 - 0.527273
flgJ SSO_1101 flagellar biosynthesis proteinchromosome CDS1178663 942 + 0.544586
flgN SSO_1090 protein of flagellar biosynthesischromosome CDS1170719 417 - 0.479616
fliJ SSO_2000 flagellar fliJ proteinchromosome CDS2098892 444 + 0.527027
fliS SSO_1981 flagellar repressor of class 3a and 3b operonschromosome CDS2081511 411 + 0.493917
glnD SSO_0179 protein PIIchromosome CDS200899 2673 - 0.533857
glnE SSO_3190 adenylylating enzyme for glutamine synthetasechromosome CDS3351049 2841 - 0.560014
grpE SSO_2770 heat shock proteinchromosome CDS2922453 594 - 0.501683
grxA SSO_0834 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductasechromosome CDS887296 258 - 0.449612
grxB SSO_1084 glutaredoxin 2chromosome CDS1164712 648 - 0.490741
grxC SSO_3795 glutaredoxin 3chromosome CDS3981021 252 + 0.511905
hflB SSO_3326 degrades sigma32, integral membrane peptidase, cell division proteinchromosome CDS3504074 1935 - 0.534367
hflC SSO_4360 protease specific for phage lambda cII repressorchromosome CDS4630149 1005 + 0.530348
hflK SSO_4359 protease specific for phage lambda cII repressorchromosome CDS4628887 1260 + 0.561905
hscA SSO_2608 heat shock proteinchromosome CDS2760302 1851 - 0.577526
hslJ SSO_1745 heat shock protein hslJchromosome CDS1850106 423 + 0.470449
hslU SSO_4100 heat shock protein hslVU ATPase subunitchromosome CDS4334456 1332 - 0.525526
hslV SSO_4101 heat shock protein hslVU, proteasome-related peptidase subunitchromosome CDS4335797 531 - 0.527307
htpG SSO_0460 chaperone Hsp90chromosome CDS487308 1875 + 0.5296
htpX SSO_1332 heat shock proteinchromosome CDS1407072 882 + 0.531746
htrA SSO_0174 periplasmic serine protease Dochromosome CDS195804 1425 + 0.541754
hyaE SSO_0982 protein involved in processing of HyaA and HyaB proteinschromosome CDS1055997 339 + 0.554572
hybG SSO_3135 hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2chromosome CDS3296151 249 - 0.526104
hypB SSO_2874 guanine-nucleotide binding proteinchromosome CDS3013868 873 + 0.555556
hypC SSO_2875 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3014731 273 + 0.549451
hypD SSO_2876 pleiotrophic effects on 3 hydrogenase isozymeschromosome CDS3015003 1122 + 0.551693
hypE SSO_2877 HypEchromosome CDS3016163 969 + 0.571723
hypF SSO_2856 transcriptional regulatory proteinchromosome CDS2996411 2253 - 0.579228
ibpA SSO_3638 heat shock proteinchromosome CDS3808253 414 - 0.47343
ibpB SSO_3637 heat shock proteinchromosome CDS3807713 435 - 0.482759
lon SSO_0422 DNA-binding, ATP-dependent protease Lachromosome CDS447685 2355 + 0.524841
mopA SSO_4326 GroELchromosome CDS4596759 1647 + 0.53309
mopB SSO_4325 GroESchromosome CDS4596422 294 + 0.486395
msrA SSO_4404 peptide methionine sulfoxide reductasechromosome CDS4668546 639 - 0.543036
mxiG SSO_P098 MxiGpSS_046 CDS92038 1116 + 0.30914
nrdG SSO_4418 anaerobic ribonucleotide reductase activating proteinchromosome CDS4686353 465 - 0.505376
nrdH SSO_2818 glutaredoxin-like proteinchromosome CDS2961839 246 + 0.53252
nrfE SSO_4255 formate-dependent nitrite reductasechromosome CDS4517507 1659 + 0.569017
nrfF SSO_4256 NrfFchromosome CDS4519158 384 + 0.518229
nrfG SSO_4257 component of formate-dependent nitrite reductase complexchromosome CDS4519538 597 + 0.520938
osmC SSO_1642 osmotically inducible proteinchromosome CDS1733921 432 - 0.497685
pcm SSO_2891 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS3032537 627 - 0.535885
pflA SSO_0903 pyruvate formate lyase activating enzyme 1chromosome CDS964609 741 - 0.502024
pflC SSO_4125 probable pyruvate formate lyase activating enzyme 2chromosome CDS4365898 879 + 0.547213
ppiA SSO_3494 peptidyl-prolyl cis-trans isomerase Achromosome CDS3653724 573 - 0.511344
ppiB SSO_0493 peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS522848 495 + 0.476768
ppiC SSO_3946 peptidyl-prolyl cis-trans isomerase Cchromosome CDS4168887 282 - 0.507092
ptr SSO_2978 protease IIIchromosome CDS3125611 2889 - 0.509519
rpsV SSO_1644 30S ribosomal subunit protein S22chromosome CDS1735790 138 + 0.449275
slpA SSO_0033 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS32992 450 + 0.54
slyD SSO_3479 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS3639906 591 - 0.549915
smpB SSO_2743 small protein Bchromosome CDS2901987 483 - 0.513458
sms SSO_4539 probable ATP-dependent proteasechromosome CDS4809579 1383 + 0.574837
sohB SSO_1871 putative proteasechromosome CDS1969931 1050 - 0.506667
sppA SSO_1389 protease IV, a signal peptide peptidasechromosome CDS1462846 1857 - 0.521271
sspA SSO_3370 regulator of transcription; stringent starvation protein Achromosome CDS3548475 639 - 0.536776
surA SSO_0061 survival proteinchromosome CDS62752 1287 - 0.540793
tig SSO_0419 trigger factorchromosome CDS443930 1299 + 0.511932
tpx SSO_1814 thiol peroxidasechromosome CDS1910282 507 + 0.512821
trxA SSO_3952 thioredoxin 1chromosome CDS4176397 384 + 0.5
trxB SSO_0889 thioredoxin reductasechromosome CDS944904 966 - 0.533126
trxC SSO_2708 putative thioredoxin-like proteinchromosome CDS2865068 420 + 0.495238
ybaU SSO_0424 putative protease maturation proteinchromosome CDS450712 1872 + 0.522436
ybbJ SSO_0477 conserved hypothetical proteinchromosome CDS507651 456 - 0.574561
ybbK SSO_0478 putative proteasechromosome CDS508106 918 - 0.526144
ybbN SSO_0481 putative thioredoxin-like proteinchromosome CDS510675 891 - 0.548822
ybeS SSO_0600 putative enzyme of polynucleotide modificationchromosome CDS638698 1428 + 0.485294
ybeW SSO_0604 putative dnaK proteinchromosome CDS643006 1671 - 0.499102
ybiY SSO_0806 putative pyruvate formate-lyase 2 activating enzymechromosome CDS857762 927 - 0.537217
ycaL SSO_0911 putative heat shock proteinchromosome CDS975948 789 + 0.491762
ydcP SSO_1703 putative collagenasechromosome CDS1806277 2004 - 0.507485
ydhD SSO_1502 conserved hypothetical proteinchromosome CDS1577860 348 + 0.522988
yeaA SSO_1385 conserved hypothetical proteinchromosome CDS1460123 414 + 0.480676
yeaZ SSO_1354 conserved hypothetical proteinchromosome CDS1428843 696 + 0.554598
yedF SSO_1986 conserved hypothetical proteinchromosome CDS2085687 234 + 0.478632
yeeD SSO_2082 conserved hypothetical proteinchromosome CDS2176848 228 - 0.513158
yegD SSO_2122 putative heat shock proteinchromosome CDS2220167 1305 + 0.565517
yegQ SSO_2134 conserved hypothetical proteinchromosome CDS2238476 1362 + 0.538913
yfcF SSO_2358 conserved hypothetical proteinchromosome CDS2490832 645 - 0.51938
yfcG SSO_2359 putative S-transferasechromosome CDS2491612 648 + 0.510802
yfhE SSO_2609 conserved hypothetical proteinchromosome CDS2762169 516 - 0.51938
ygcF SSO_2930 conserved hypothetical proteinchromosome CDS3070990 672 - 0.516369
yggG SSO_3090 conserved hypothetical proteinchromosome CDS3253561 885 + 0.523164
yggX SSO_3234 conserved hypothetical proteinchromosome CDS3410754 276 - 0.474638
ygjD SSO_3201 putative O-sialoglycoprotein endopeptidasechromosome CDS3363762 1014 - 0.572978
yhbU SSO_3304 putative collagenasechromosome CDS3478298 996 + 0.574297
yhbV SSO_3305 conserved hypothetical proteinchromosome CDS3479284 897 + 0.561873
yhfA SSO_3487 conserved hypothetical proteinchromosome CDS3647413 405 - 0.51358
yhgI SSO_3546 conserved hypothetical proteinchromosome CDS3709076 576 + 0.53125
yhhP SSO_3708 conserved hypothetical proteinchromosome CDS3886020 246 - 0.528455
yibF SSO_3816 putative S-transferasechromosome CDS4009279 609 + 0.530378
yiiF SSO_4059 conserved hypothetical proteinchromosome CDS4293217 243 + 0.452675
yjjW SSO_4530 putative activating enzymechromosome CDS4799367 864 - 0.553241
yliJ SSO_0821 putative transferasechromosome CDS875392 579 - 0.533679
ynhC SSO_1475 conserved hypothetical proteinchromosome CDS1550181 1272 + 0.528302
ynhD SSO_1474 putative ATP-binding component of a transport systemchromosome CDS1549460 747 + 0.504685
ynhE SSO_1473 conserved hypothetical proteinchromosome CDS1547924 1527 + 0.51539
yqjG SSO_3261 putative transferasechromosome CDS3435731 1014 + 0.512821
yrfI SSO_3532 conserved hypothetical proteinchromosome CDS3692414 885 + 0.526554