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2024-05-05 20:23:54

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 139

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_1494 conserved hypothetical proteinchromosome CDS1471210 1110 + 0.547748
NA SBO_4167 conserved hypothetical proteinchromosome CDS4220361 456 - 0.563596
NA SBO_1136 hypothetical proteinchromosome CDS1138087 210 + 0.37619
NA SBO_0920 conserved hypothetical proteinchromosome CDS950291 1005 + 0.559204
NA SBO_2874 conserved hypothetical proteinchromosome CDS2875713 915 - 0.531148
NA SBO_2276 putative ATP-dependent proteasechromosome CDS2262022 1761 + 0.51732
NA SBO_1593 putative transferasechromosome CDS1584836 618 - 0.472492
NA SBO_1411 putative stability/partitioning proteinchromosome CDS1388152 621 - 0.550725
aat SBO_0818 leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS829532 705 - 0.540426
ahpC SBO_0470 alkyl hydroperoxide reductase, C22 subunitchromosome CDS489464 564 + 0.5
ahpF SBO_0471 alkyl hydroperoxide reductase, F52a subunitchromosome CDS490168 1596 + 0.526942
bcp SBO_2497 bacterioferritin comigratory proteinchromosome CDS2490522 471 + 0.490446
btuE SBO_1418 vitamin B12 transportchromosome CDS1394182 552 + 0.496377
cbpA SBO_2231 curved DNA-binding proteinchromosome CDS2217392 921 + 0.530945
ccmA SBO_2106 ATP binding protein of heme exporter Achromosome CDS2087418 618 + 0.559871
ccmB SBO_2107 heme exporter protein Bchromosome CDS2088032 663 + 0.558069
ccmC SBO_2108 heme exporter protein Cchromosome CDS2088736 738 + 0.554201
ccmE SBO_2110 possible subunit of a heme lyasechromosome CDS2089676 480 + 0.541667
ccmF SBO_2111 cytochrome c-type biogenesis proteinchromosome CDS2090152 1944 + 0.570988
ccmH SBO_2113 possible subunit of heme lyasechromosome CDS2092646 1053 + 0.541311
clpA SBO_0815 ATP-binding component of serine proteasechromosome CDS826068 2277 + 0.528766
clpB SBO_2627 heat shock proteinchromosome CDS2632735 2574 - 0.513597
clpP SBO_0331 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS345525 624 + 0.509615
clpX SBO_0332 ATP-dependent specificity component of clpP serine proteasechromosome CDS346274 1275 + 0.516078
csgA SBO_2026 CsgAchromosome CDS1996140 456 - 0.508772
cydC SBO_0819 ATP-binding component of cytochrome-related transportchromosome CDS830278 1722 - 0.538328
cydD SBO_0820 ATP-binding component of cytochrome-related transportchromosome CDS832000 1767 - 0.533107
cyoE SBO_0322 protoheme IX farnesyltransferasechromosome CDS335661 891 - 0.534231
cysU SBO_2449 sulfate, thiosulfate transport system permease T proteinchromosome CDS2440028 834 - 0.553957
degQ SBO_3155 serine endoproteasechromosome CDS3160366 1368 - 0.517544
degS SBO_3154 proteasechromosome CDS3159209 1068 - 0.525281
dnaJ SBO_0016 chaperone with DnaKchromosome CDS15306 1131 + 0.552608
dnaK SBO_0015 chaperone Hsp70chromosome CDS13301 1917 + 0.511737
dsbA SBO_3872 protein disulfide isomerase Ichromosome CDS3896524 627 + 0.476874
dsbB SBO_1887 DsbBchromosome CDS1872461 531 + 0.525424
dsbC SBO_3099 protein disulfide isomerase IIchromosome CDS3099651 711 + 0.486639
dsbD SBO_4319 thiol:disulfide interchange proteinchromosome CDS4369056 1698 + 0.53828
dsbE SBO_2112 disulfide oxidoreductasechromosome CDS2092092 558 + 0.546595
fdhE SBO_3905 FdhEchromosome CDS3932577 930 - 0.550538
fkpA SBO_3327 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3312557 813 - 0.479705
flgA SBO_1992 assembly of basal-body periplasmic P ringchromosome CDS1965793 660 + 0.524242
flgN SBO_1994 protein of flagellar biosynthesischromosome CDS1966862 417 + 0.47482
fliJ SBO_1065 flagellar fliJ proteinchromosome CDS1076028 444 - 0.529279
fliS SBO_1081 FliSchromosome CDS1090532 411 - 0.501217
glnD SBO_0155 protein PIIchromosome CDS171996 2673 - 0.534979
glnE SBO_2909 glutamine synthetase adenylylating enzymechromosome CDS2911447 2841 - 0.556846
grpE SBO_2749 GrpEchromosome CDS2758885 594 - 0.5
grxA SBO_0783 GrxAchromosome CDS793325 258 - 0.449612
grxB SBO_2000 glutaredoxin 2chromosome CDS1972632 648 + 0.489198
grxC SBO_3616 glutaredoxin 3chromosome CDS3632976 252 - 0.511905
gst SBO_1499 glutathionine S-transferasechromosome CDS1475830 606 - 0.504951
hflB SBO_3204 HflBchromosome CDS3208056 1935 + 0.531783
hflC SBO_4281 protease specific for phage lambda cII repressorchromosome CDS4329975 1005 - 0.528358
hflK SBO_4282 protease specific for phage lambda cII repressorchromosome CDS4330982 1260 - 0.562698
hscA SBO_2550 HscAchromosome CDS2552475 1851 - 0.574824
hslJ SBO_1687 heat shock protein hslJchromosome CDS1671139 423 + 0.468085
hslU SBO_3948 heat shock protein hslVU, ATPase subunitchromosome CDS3973992 1332 - 0.523273
hslV SBO_3949 heat shock protein hslVU, proteasome-related peptidase subunitchromosome CDS3975333 531 - 0.525424
htpG SBO_0373 chaperone Hsp90chromosome CDS388370 1875 + 0.529067
htpX SBO_1244 heat shock proteinchromosome CDS1238351 882 - 0.530612
htrA SBO_0150 periplasmic serine protease Dochromosome CDS166913 1425 + 0.542456
hyaE SBO_2255 HyaEchromosome CDS2243563 399 - 0.56391
hybG SBO_2873 HybGchromosome CDS2875342 249 + 0.526104
hypB SBO_2793 guanine-nucleotide binding proteinchromosome CDS2801362 873 - 0.553265
hypC SBO_2792 HypCchromosome CDS2801099 273 - 0.553114
hypD SBO_2791 HypDchromosome CDS2799978 1122 - 0.551693
hypE SBO_2790 HypEchromosome CDS2798971 969 - 0.560372
hypF SBO_2806 transcriptional regulatory proteinchromosome CDS2814421 2253 + 0.579228
ibpA SBO_3684 heat shock proteinchromosome CDS3699610 414 + 0.47343
ibpB SBO_3685 heat shock proteinchromosome CDS3700129 435 + 0.487356
lon SBO_0333 DNA-binding, ATP-dependent protease Lachromosome CDS347736 2355 + 0.523567
mopA SBO_4313 GroELchromosome CDS4361426 1647 - 0.529447
mopB SBO_4314 GroESchromosome CDS4363116 294 - 0.486395
msrA SBO_4224 peptide methionine sulfoxide reductasechromosome CDS4281020 639 + 0.543036
nrdG SBO_4209 anaerobic ribonucleotide reductase activating proteinchromosome CDS4262067 465 + 0.505376
nrdH SBO_2844 glutaredoxin-like proteinchromosome CDS2852563 246 - 0.53252
nrfE SBO_4105 formate-dependent nitrite reductase possible assembly proteinchromosome CDS4147780 1659 + 0.572634
nrfF SBO_4106 NrfGchromosome CDS4149431 384 + 0.526042
nrfG SBO_4107 NrfGchromosome CDS4149811 597 + 0.517588
osmC SBO_1575 osmotically inducible proteinchromosome CDS1569852 432 - 0.497685
pcm SBO_2777 L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS2783760 627 + 0.54067
pflA SBO_2188 pyruvate formate lyase activating enzyme 1chromosome CDS2164848 741 - 0.504723
pflC SBO_3971 probable pyruvate formate lyase activating enzyme 2chromosome CDS4005090 879 + 0.54835
ppiA SBO_3345 peptidyl-prolyl cis-trans isomerase Achromosome CDS3330469 573 - 0.514834
ppiB SBO_0418 peptidyl-prolyl cis-trans isomerase Bchromosome CDS434077 495 + 0.476768
ppiC SBO_3786 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3807683 282 - 0.514184
ptr SBO_2711 protease IIIchromosome CDS2718730 2889 - 0.508827
rpsV SBO_1577 30S ribosomal subunit protein S22chromosome CDS1570946 138 + 0.449275
slpA SBO_0027 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS25862 450 + 0.54
slyD SBO_3329 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3313857 591 - 0.551607
smpB SBO_2755 small protein Bchromosome CDS2763666 483 + 0.513458
sms SBO_4452 probable ATP-dependent proteasechromosome CDS4504137 1383 + 0.574837
sohB SBO_1794 putative proteasechromosome CDS1773322 1050 - 0.502857
sppA SBO_1321 protease IVchromosome CDS1305019 1857 - 0.519117
sspA SBO_3160 stringent starvation protein Achromosome CDS3165055 639 + 0.536776
surA SBO_0042 survival proteinchromosome CDS42478 1287 - 0.540793
tig SBO_0330 trigger factorchromosome CDS343980 1299 + 0.510393
tpx SBO_1746 thiol peroxidasechromosome CDS1725274 507 + 0.514793
trxA SBO_3791 thioredoxin 1chromosome CDS3815193 384 + 0.497396
trxB SBO_0821 thioredoxin reductasechromosome CDS833889 966 - 0.526915
trxC SBO_2614 putative thioredoxin-like proteinchromosome CDS2618417 420 + 0.490476
yabH SBO_0044 putative DNA binding proteinchromosome CDS46426 816 + 0.529412
ybaU SBO_0335 putative protease maturation proteinchromosome CDS350763 1872 + 0.520833
ybbJ SBO_0390 conserved hypothetical proteinchromosome CDS408223 456 - 0.574561
ybbK SBO_0391 putative proteasechromosome CDS408678 918 - 0.523965
ybeS SBO_0510 putative enzyme of polynucleotide modificationchromosome CDS527825 1428 + 0.481793
ybeW SBO_0513 putative dnaK proteinchromosome CDS531014 1671 - 0.499701
ybiY SBO_0714 putative pyruvate formate-lyase 2 activating enzymechromosome CDS732287 927 - 0.538296
ydhD SBO_1479 conserved hypothetical proteinchromosome CDS1455557 348 + 0.525862
yeaA SBO_1317 conserved hypothetical proteinchromosome CDS1302296 414 + 0.480676
yeaZ SBO_1281 conserved hypothetical proteinchromosome CDS1270321 696 + 0.557471
yedF SBO_1076 conserved hypothetical proteinchromosome CDS1086532 234 - 0.482906
yeeD SBO_0836 conserved hypothetical proteinchromosome CDS852439 228 - 0.513158
yegD SBO_0896 putative heat shock proteinchromosome CDS918406 1416 + 0.560734
yegQ SBO_0908 conserved hypothetical proteinchromosome CDS937734 1362 + 0.540382
yfcF SBO_2336 conserved hypothetical proteinchromosome CDS2327971 633 - 0.519747
yfcG SBO_2337 putative S-transferasechromosome CDS2328739 648 + 0.510802
yfhE SBO_2551 conserved hypothetical proteinchromosome CDS2554342 516 - 0.517442
ygcF SBO_2656 conserved hypothetical proteinchromosome CDS2660021 672 - 0.517857
yggG SBO_3053 conserved hypothetical proteinchromosome CDS3050873 885 - 0.524294
yggX SBO_3028 conserved hypothetical proteinchromosome CDS3029173 276 - 0.474638
ygjD SBO_2922 putative O-sialoglycoprotein endopeptidasechromosome CDS2924722 1014 - 0.574951
yhbU SBO_3224 putative collagenasechromosome CDS3232613 981 - 0.576962
yhbV SBO_3223 conserved hypothetical proteinchromosome CDS3231726 897 - 0.555184
yhfA SBO_3336 conserved hypothetical proteinchromosome CDS3321370 252 - 0.507937
yhgI SBO_3403 conserved hypothetical proteinchromosome CDS3388477 576 + 0.526042
yhhP SBO_3467 conserved hypothetical proteinchromosome CDS3458141 246 - 0.53252
yibF SBO_3592 putative S-transferasechromosome CDS3602249 609 - 0.528736
yifB SBO_3777 putative 2-component regulatorchromosome CDS3796795 1413 - 0.514508
yiiF SBO_3904 conserved hypothetical proteinchromosome CDS3932005 243 + 0.45679
yjhS SBO_4359 conserved hypothetical proteinchromosome CDS4410400 981 - 0.4842
yjiC SBO_4376 conserved hypothetical proteinchromosome CDS4429436 831 - 0.392298
yjjW SBO_4440 putative activating enzymechromosome CDS4491956 864 - 0.554398
yliJ SBO_0734 putative transferasechromosome CDS751846 579 - 0.533679
ynhC SBO_1449 conserved hypothetical proteinchromosome CDS1426504 1272 + 0.529088
ynhD SBO_1448 putative ATP-binding component of a transport systemchromosome CDS1425783 747 + 0.504685
ynhE SBO_1447 conserved hypothetical proteinchromosome CDS1424247 1527 + 0.519319
yqjG SBO_2969 putative transferasechromosome CDS2973244 876 + 0.511416
yrfI SBO_3388 conserved hypothetical proteinchromosome CDS3371792 885 + 0.522034