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2024-05-17 18:25:06

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Shigella dysenteriae Sd197, Sd197

Number of genes found: 128

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Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SDY_1436 antitermination protein Q homolog of cryptic prophageSubName: Full=Antitermination protein Q homolog of cryptic prophage; chromosome CDS1323419 822 + 0.492701
NA SDY_2272 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2068030 1005 + 0.555224
NA SDY_3084 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2858165 915 - 0.533333
NA SDY_1951 putative transferaseSubName: Full=Putative transferase; chromosome CDS1774574 609 - 0.472906
NA SDY_2497 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2299591 321 - 0.52648
NA SDY_1863 conserved hypothetical proteinRecName: Full=Anhydro-N-acetylmuramic acid kinase; EC=2.7.1.170; AltName: Full=AnhMurNAc kinase; chromosome CDS1697994 1110 - 0.553153
aat SDY_2376 leucyl, phenylalanyl-tRNA-protein transferaseRecName: Full=Leucyl/phenylalanyl-tRNA--protein transferase; EC=2.3.2.6; AltName: Full=L/F-transferase; AltName: Full=Leucyltransferase; AltName: Full=Phenyalanyltransferase; chromosome CDS2179234 705 + 0.539007
ahpC SDY_0540 alkyl hydroperoxide reductase, C22 subunitSubName: Full=Alkyl hydroperoxide reductase, C22 subunit; chromosome CDS525582 564 + 0.5
ahpF SDY_0541 alkyl hydroperoxide reductase, F52a subunitSubName: Full=Alkyl hydroperoxide reductase, F52a subunit; chromosome CDS526244 1596 + 0.526316
bcp SDY_2669 bacterioferritin comigratory proteinSubName: Full=Bacterioferritin comigratory protein; chromosome CDS2460067 471 + 0.494692
btuE SDY_1805 vitamin B12 transport proteinRecName: Full=Glutathione peroxidase; chromosome CDS1642626 552 - 0.490942
cbpA SDY_0974 curved DNA-binding proteinRecName: Full=Curved DNA-binding protein; chromosome CDS924045 921 - 0.527687
ccmA SDY_0877 ATP binding protein of heme exporter ARecName: Full=Cytochrome c biogenesis ATP-binding export protein CcmA; EC=3.6.3.41; AltName: Full=Heme exporter protein A; chromosome CDS826322 618 + 0.550162
ccmB SDY_0878 heme exporter protein BRecName: Full=Heme exporter protein B; chromosome CDS826936 663 + 0.555053
ccmC SDY_0879 heme exporter protein CSubName: Full=Heme exporter protein C; chromosome CDS827640 738 + 0.547425
ccmE SDY_0881 cytochrome c biogenesisRecName: Full=Cytochrome c-type biogenesis protein CcmE; AltName: Full=Cytochrome c maturation protein E; AltName: Full=Heme chaperone CcmE; chromosome CDS828580 480 + 0.535417
ccmF SDY_0882 cytochrome c-type biogenesis proteinSubName: Full=Cytochrome c-type biogenesis protein; chromosome CDS829056 1944 + 0.569959
ccmH SDY_0884 possible subunit of heme lyaseSubName: Full=Possible subunit of heme lyase; chromosome CDS831550 1053 + 0.534663
clpA SDY_2379 ATP-binding component of serine proteaseSubName: Full=ATP-binding component of serine protease; chromosome CDS2181125 2277 - 0.524374
clpB SDY_2835 heat shock proteinSubName: Full=Heat shock protein; chromosome CDS2627369 2574 - 0.511267
clpP SDY_0295 ATP-dependent proteolytic subunit of clpA-clpP serine proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS288947 624 - 0.508013
clpX SDY_0294 ATP-dependent specificity component of clpP serine proteaseRecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX; chromosome CDS287547 1275 - 0.512157
cydC SDY_2375 ATP-binding component of cytochrome-related transportSubName: Full=ATP-binding component of cytochrome-related transport; chromosome CDS2177471 1722 + 0.537166
cydD SDY_2374 ATP-binding component of cytochrome-related transport, Zn sensitiveSubName: Full=ATP-binding component of cytochrome-related transport, Zn sensitive; chromosome CDS2175704 1767 + 0.532541
cysU SDY_2620 sulfate, thiosulfate transport system permease T proteinSubName: Full=Sulfate, thiosulfate transport system permease T protein; chromosome CDS2414180 834 - 0.558753
degQ SDY_3410 serine endoproteaseSubName: Full=Serine endoprotease; chromosome CDS3164762 1368 + 0.522661
degS SDY_3411 proteaseSubName: Full=Protease; chromosome CDS3166219 1068 + 0.525281
dnaJ SDY_0014 heat shock proteinRecName: Full=Chaperone protein DnaJ; chromosome CDS14160 1131 + 0.55084
dnaK SDY_0013 chaperone Hsp70RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70; chromosome CDS12155 1917 + 0.512259
dsbA SDY_3885 protein disulfide isomerase IRecName: Full=Thiol:disulfide interchange protein; chromosome CDS3616601 627 - 0.476874
dsbB SDY_1222 DsbBRecName: Full=Disulfide bond formation protein B; AltName: Full=Disulfide oxidoreductase; chromosome CDS1127260 531 - 0.519774
dsbC SDY_3189 protein disulfide isomerase IISubName: Full=Protein disulfide isomerase II; chromosome CDS2955221 711 + 0.483826
dsbD SDY_4441 thiol:disulfide interchange proteinRecName: Full=Thiol:disulfide interchange protein DsbD; EC=1.8.1.8; AltName: Full=Protein-disulfide reductase; Short=Disulfide reductase; Flags: Precursor; chromosome CDS4154160 1698 - 0.541814
dsbE SDY_0883 disulfide oxidoreductaseSubName: Full=Disulfide oxidoreductase; chromosome CDS830996 558 + 0.541219
fdhE SDY_3852 affects formate dehydrogenase-NRecName: Full=Protein FdhE; chromosome CDS3585795 930 + 0.547312
fklB SDY_4377 FKBP-type 22KD peptidyl-prolyl cis-trans isomeraseRecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS4097338 780 + 0.521795
fkpA SDY_3508 FKBP-type peptidyl-prolyl cis-trans isomeraseRecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS3243939 795 - 0.480503
flgA SDY_2080 assembly of basal-body periplasmic P ringSubName: Full=Assembly of basal-body periplasmic P ring; chromosome CDS1890612 660 + 0.527273
flgJ SDY_2070 FlgJSubName: Full=FlgJ; chromosome CDS1882427 942 - 0.542463
fliS SDY_1090 repressor of class 3a and 3b operonsSubName: Full=Repressor of class 3a and 3b operons; chromosome CDS1017681 411 - 0.498783
glnD SDY_0183 protein PIIRecName: Full=Bifunctional uridylyltransferase/uridylyl-removing enzyme; Short=UTase/UR; AltName: Full=Bifunctional [protein-PII] modification enzyme; AltName: Full=Bifunctional nitrogen sensor protein; Includes: RecName: Full=[Protein-PII] uridylyltransferase; Short=PII uridylyltransferase; Short=UTase; EC=2.7.7.59; Includes: RecName: Full=[Protein-PII]-UMP uridylyl-removing enzyme; Short=UR; EC=3.1.4.-; chromosome CDS186240 2673 - 0.535354
glnE SDY_3236 adenylylating enzyme for glutamine synthetaseRecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthetase adenylyltransferase; Short=ATase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; chromosome CDS2996917 2841 - 0.56107
grpE SDY_2787 GrpERecName: Full=Protein GrpE; AltName: Full=HSP-70 cofactor; chromosome CDS2581627 594 - 0.5
grxA SDY_0746 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductaseSubName: Full=Glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase; chromosome CDS693847 258 + 0.46124
grxB SDY_2089 glutaredoxin 2SubName: Full=Glutaredoxin 2; chromosome CDS1898185 648 + 0.487654
grxC SDY_4043 glutaredoxin 3SubName: Full=Glutaredoxin 3; chromosome CDS3779972 252 - 0.52381
gst SDY_1858 glutathionine S-transferaseSubName: Full=Glutathionine S-transferase; chromosome CDS1693878 606 + 0.50165
hflB SDY_3359 HflBRecName: Full=ATP-dependent zinc metalloprotease FtsH; EC=3.4.24.-; chromosome CDS3116406 1935 - 0.534367
hflC SDY_4414 protease specific for phage lambda cII repressorRecName: Full=Modulator of FtsH protease HflC; chromosome CDS4129523 1005 - 0.527363
hflK SDY_4415 protease specific for phage lambda cII repressorSubName: Full=Protease specific for phage lambda cII repressor; chromosome CDS4130530 1260 - 0.564286
hscA SDY_2722 HscARecName: Full=Chaperone protein HscA; AltName: Full=Hsc66; chromosome CDS2520692 1851 - 0.576985
hslU SDY_3806 heat shock protein hslVU, ATPase subunitRecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Heat shock protein HslU; AltName: Full=Unfoldase HslU; chromosome CDS3545007 1332 + 0.524024
hslV SDY_3805 heat shock protein hslVU, proteasome-related peptidase subunitRecName: Full=ATP-dependent protease subunit HslV; EC=3.4.25.2; AltName: Full=Heat shock protein HslV; chromosome CDS3544467 531 + 0.516008
htpG SDY_0446 chaperone Hsp90RecName: Full=Chaperone protein HtpG; AltName: Full=Heat shock protein HtpG; AltName: Full=High temperature protein G; chromosome CDS436521 1875 - 0.524267
htpX SDY_1977 heat shock proteinRecName: Full=Protease HtpX; EC=3.4.24.-; AltName: Full=Heat shock protein HtpX; chromosome CDS1796191 882 - 0.53288
htrA SDY_0178 periplasmic serine protease DoSubName: Full=Periplasmic serine protease Do; chromosome CDS181864 1425 + 0.537544
hyaE SDY_0951 processor of HyaA and HyaB proteinsSubName: Full=Processor of HyaA and HyaB proteins; chromosome CDS898998 399 + 0.553885
hybG SDY_3083 hydrogenase-2 operon proteinSubName: Full=Hydrogenase-2 operon protein; chromosome CDS2857794 249 + 0.526104
hypB SDY_2924 guanine-nucleotide binding proteinSubName: Full=Guanine-nucleotide binding protein; chromosome CDS2705500 873 + 0.550974
hypC SDY_2925 pleiotrophic effects on 3 hydrogenase isozymesSubName: Full=Pleiotrophic effects on 3 hydrogenase isozymes; chromosome CDS2706363 273 + 0.549451
hypD SDY_2926 pleiotrophic effects on 3 hydrogenase isozymesSubName: Full=Pleiotrophic effects on 3 hydrogenase isozymes; chromosome CDS2706635 1122 + 0.551693
hypE SDY_2927 HypESubName: Full=HypE; chromosome CDS2707795 969 + 0.575851
hypF SDY_2909 transcriptional regulatory proteinSubName: Full=Transcriptional regulatory protein; chromosome CDS2689899 2253 - 0.57257
ibpA SDY_4173 heat shock proteinRecName: Full=Small heat shock protein IbpA; AltName: Full=16 kDa heat shock protein A; chromosome CDS3906871 414 - 0.475845
ibpB SDY_4172 heat shock proteinRecName: Full=Small heat shock protein IbpB; AltName: Full=16 kDa heat shock protein B; chromosome CDS3906331 435 - 0.48046
lon SDY_0293 DNA-binding, ATP-dependent protease LaRecName: Full=Lon protease; EC=3.4.21.53; AltName: Full=ATP-dependent protease La; chromosome CDS284921 2439 - 0.514965
mopA SDY_4449 GroELRecName: Full=60 kDa chaperonin; AltName: Full=GroEL protein; AltName: Full=Protein Cpn60; chromosome CDS4162613 1647 + 0.530662
mopB SDY_4448 GroESRecName: Full=10 kDa chaperonin; AltName: Full=GroES protein; AltName: Full=Protein Cpn10; chromosome CDS4162276 294 + 0.493197
msrA SDY_4456 peptide methionine sulfoxide reductaseRecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; EC=1.8.4.11; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; chromosome CDS4169134 639 - 0.536776
nrdG SDY_4256 anaerobic ribonucleotide reductase activating proteinRecName: Full=Anaerobic ribonucleoside-triphosphate reductase-activating protein; EC=1.97.1.-; chromosome CDS3985429 465 - 0.505376
nrdH SDY_2866 glutaredoxin-like proteinSubName: Full=Glutaredoxin-like protein; chromosome CDS2651587 246 + 0.53252
osmC SDY_1610 osmotically inducible proteinSubName: Full=Osmotically inducible protein; chromosome CDS1472720 432 + 0.50463
pcm SDY_2942 L-isoaspartate protein carboxylmethyltransferase type IIRecName: Full=Protein-L-isoaspartate O-methyltransferase; EC=2.1.1.77; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase; Short=PIMT; chromosome CDS2722008 627 - 0.539075
pflA SDY_2359 pyruvate formate lyase activating enzyme 1SubName: Full=Pyruvate formate lyase activating enzyme 1; chromosome CDS2154900 741 + 0.496626
pflC SDY_3787 probable pyruvate formate lyase activating enzyme 2SubName: Full=Probable pyruvate formate lyase activating enzyme 2; chromosome CDS3520458 879 + 0.542662
ppiA SDY_3525 peptidyl-prolyl cis-trans isomerase ARecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS3258767 573 - 0.509599
ppiB SDY_0277 peptidyl-prolyl cis-trans isomerase BRecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS271921 495 - 0.474747
ppiC SDY_3973 peptidyl-prolyl cis-trans isomerase CSubName: Full=Peptidyl-prolyl cis-trans isomerase C; chromosome CDS3704675 282 + 0.510638
ptr SDY_3038 protease IIISubName: Full=Protease III; chromosome CDS2812624 2889 - 0.50848
slpA SDY_0050 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomeraseRecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS44578 450 + 0.542222
slyD SDY_3510 FKBP-type peptidyl-prolyl cis-trans isomeraseRecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; chromosome CDS3245221 579 - 0.552677
smpB SDY_2793 small protein BRecName: Full=SsrA-binding protein; AltName: Full=Small protein B; chromosome CDS2586408 483 + 0.519669
sms SDY_4650 probable ATP-dependent proteaseRecName: Full=DNA repair protein radA; chromosome CDS4353598 1383 + 0.577007
sohB SDY_1342 putative proteaseSubName: Full=Putative protease; chromosome CDS1239881 1041 + 0.49952
sppA SDY_1507 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1378879 1857 - 0.519655
sspA SDY_3405 stringent starvation protein ASubName: Full=Stringent starvation protein A; chromosome CDS3160802 639 - 0.533646
surA SDY_0078 survival proteinRecName: Full=Chaperone SurA; AltName: Full=Peptidyl-prolyl cis-trans isomerase SurA; Short=PPIase SurA; EC=5.2.1.8; AltName: Full=Rotamase SurA; Flags: Precursor; chromosome CDS72538 1287 - 0.539239
tig SDY_0296 trigger factorRecName: Full=Trigger factor; Short=TF; EC=5.2.1.8; AltName: Full=PPIase; chromosome CDS289815 1299 - 0.511932
tpx SDY_1402 thiol peroxidaseRecName: Full=Probable thiol peroxidase; EC=1.11.1.-; chromosome CDS1295558 507 - 0.514793
trxA SDY_3968 thioredoxin 1RecName: Full=Thioredoxin; chromosome CDS3697062 384 - 0.5
trxB SDY_2373 thioredoxin reductaseRecName: Full=Thioredoxin reductase; EC=1.8.1.9; chromosome CDS2174616 966 + 0.528986
trxC SDY_2825 putative thioredoxin-like proteinRecName: Full=Thioredoxin; chromosome CDS2614591 420 + 0.5
yabH SDY_0080 putative DNA-binding proteinRecName: Full=DnaJ-like protein DjlA; chromosome CDS76486 816 + 0.525735
yabK SDY_0094 putative transport system permease proteinSubName: Full=Putative transport system permease protein; chromosome CDS93380 1611 - 0.58473
ybaU SDY_0291 putative protease maturation proteinSubName: Full=Putative protease maturation protein; chromosome CDS282452 1872 - 0.520833
ybbJ SDY_0411 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS394660 459 + 0.586057
ybbK SDY_0410 putative proteaseSubName: Full=Putative protease; chromosome CDS393746 918 + 0.523965
ybbN SDY_0407 putative thioredoxin-like proteinSubName: Full=Putative thioredoxin-like protein; chromosome CDS391204 891 + 0.5578
ybiY SDY_0763 putative pyruvate formate-lyase 2 activating enzymeSubName: Full=Putative pyruvate formate-lyase 2 activating enzyme; chromosome CDS709545 927 + 0.543689
ycaL SDY_2349 putative heat shock proteinSubName: Full=Putative heat shock protein; chromosome CDS2142176 765 - 0.500654
ydcP SDY_1740 putative collagenaseSubName: Full=Putative collagenase; chromosome CDS1586198 1638 - 0.505495
ydhD SDY_1880 conserved hypothetical proteinRecName: Full=Glutaredoxin; chromosome CDS1714043 348 - 0.522988
yeaA SDY_1489 conserved hypothetical proteinRecName: Full=Peptide methionine sulfoxide reductase MsrB; EC=1.8.4.12; AltName: Full=Peptide-methionine (R)-S-oxide reductase; chromosome CDS1365686 414 + 0.480676
yeaZ SDY_1711 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1563682 696 - 0.556035
yedF SDY_1085 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1013682 234 - 0.474359
yeeD SDY_2230 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2033229 228 + 0.513158
yegD SDY_2193 putative heat shock proteinSubName: Full=Putative heat shock protein; chromosome CDS1992465 1416 - 0.562147
yegQ SDY_2259 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2054955 1362 + 0.541116
yfcF SDY_2498 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2299912 324 - 0.487654
yfcG SDY_2499 putative S-transferaseSubName: Full=Putative S-transferase; chromosome CDS2300371 648 + 0.520062
yfhE SDY_2723 conserved hypothetical proteinRecName: Full=Co-chaperone protein HscB; AltName: Full=Hsc20; chromosome CDS2522559 516 - 0.517442
ygcF SDY_2981 conserved hypothetical proteinRecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG synthase; EC=4.3.99.3; AltName: Full=Queuosine biosynthesis protein QueE; chromosome CDS2755549 672 - 0.513393
yggG SDY_3140 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2908513 759 - 0.525692
yggX SDY_3110 conserved hypothetical proteinRecName: Full=Probable Fe(2+)-trafficking protein; chromosome CDS2885303 276 - 0.467391
ygjD SDY_3248 putative O-sialoglycoprotein endopeptidaseRecName: Full=tRNA N6-adenosine threonylcarbamoyltransferase; EC=2.6.99.4; AltName: Full=N6-L-threonylcarbamoyladenine synthase; Short=t(6)A synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaD; chromosome CDS3009833 1014 - 0.573964
yhbU SDY_3337 putative collagenaseSubName: Full=Putative collagenase; chromosome CDS3092197 996 + 0.572289
yhbV SDY_3338 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3093183 897 + 0.556299
yhfA SDY_3518 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3252456 405 - 0.51358
yhgI SDY_3662 conserved hypothetical proteinRecName: Full=Fe/S biogenesis protein NfuA; chromosome CDS3393204 576 - 0.529514
yhhP SDY_3621 conserved hypothetical proteinRecName: Full=Sulfurtransferase TusA; EC=2.8.1.-; AltName: Full=tRNA 2-thiouridine synthesizing protein A; chromosome CDS3357439 246 - 0.51626
yibF SDY_4211 putative S-transferaseSubName: Full=Putative S-transferase; chromosome CDS3941729 609 + 0.518883
yjjW SDY_4639 putative activating enzymeSubName: Full=Putative activating enzyme; chromosome CDS4342612 864 - 0.559028
yliJ SDY_0838 putative transferaseSubName: Full=Putative transferase; chromosome CDS782376 633 - 0.518167
ynhC SDY_1912 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1741492 1272 - 0.529874
ynhD SDY_1913 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS1742738 747 - 0.507363
ynhE SDY_1914 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1743494 768 - 0.505208
yqjG SDY_3291 putative transferaseSubName: Full=Putative transferase; chromosome CDS3053888 987 + 0.509625
yrfI SDY_3677 conserved hypothetical proteinRecName: Full=33 kDa chaperonin; AltName: Full=Heat shock protein 33 homolog; Short=HSP33; chromosome CDS3409509 885 - 0.523164