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2024-04-30 04:05:46

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 177

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0272 putative ATPase with chaperone activity; homolog of Yersinia clpBchromosome CDS311194 2640 + 0.595455
STM0335 putative outer membrane proteinchromosome CDS378536 399 + 0.35589
STM0402 putative thiol-alkyl hydroperoxide reductasechromosome CDS458073 603 - 0.532338
STM0567 putative ATPase involved in DNA repairchromosome CDS622698 1176 - 0.537415
STM0903 putative Fels-1 prophage chaparonechromosome CDS973404 816 + 0.546569
STM0912 Fels-1 prophage protease subunits of ATP-dependent proteaseschromosome CDS983263 2187 + 0.576589
STM1022 Gifsy-2 prophage putative molecular chaperone, DnaJ familychromosome CDS1111509 798 + 0.463659
STM1033 Gifsy-2 prophage Clp protease-like proteinchromosome CDS1120666 2082 + 0.524976
STM1251 putative molecular chaperone (small heat shock protein)chromosome CDS1335516 468 + 0.455128
STM1534 putative hydrogenasechromosome CDS1609982 411 - 0.530414
STM1667 putative thiol peroxidasechromosome CDS1759693 558 - 0.444444
STM1790 putative thiol-disulfide isomerase and thioredoxinchromosome CDS1889069 405 + 0.575309
STM1864 putative inner membrane proteinchromosome CDS1960722 615 + 0.43252
STM2176 putative glutathione S-transferasechromosome CDS2272979 645 - 0.562791
STM2605 Gifsy-1 prophage proteinchromosome CDS2752336 1497 - 0.565798
STM2762 putative inner membrane proteinchromosome CDS2903614 1284 - 0.309969
STM3193 putative thiol-disulfide isomerase and thioredoxinchromosome CDS3356317 672 + 0.46131
STM3194 putative disulfide isomerasechromosome CDS3357003 678 + 0.510324
STM3752 putative cytoplasmic proteinchromosome CDS3948987 345 - 0.394203
STM4067 putative ADP-ribosylglycohydrolasechromosome CDS4277918 1041 + 0.570605
STM4267 putative glutathione S-transferasechromosome CDS4505131 669 + 0.547085
STM4309 putative periplasmic or exported proteinchromosome CDS4556468 1401 - 0.533191
STM4491 putative ATP-dependent Lon proteasechromosome CDS4736677 2085 - 0.508873
aat leucyl, phenylalanyl-tRNA-protein transferasechromosome CDS1030877 705 - 0.567376
ahpC alkyl hydroperoxide reductase, C22 subunitchromosome CDS670449 564 + 0.508865
ahpF alkyl hydroperoxide reductase, F52a subunitchromosome CDS671254 1566 + 0.54917
b2145 putative inner membrane proteinchromosome CDS2280943 246 + 0.406504
bcfH putative thiol-disulfide isomerasechromosome CDS31274 846 + 0.549645
bcp thioredoxin dependent thiol peroxidasechromosome CDS2605639 471 + 0.481953
btuE vitamin B12 transport proteinchromosome CDS1420643 552 + 0.494565
cbpA curved DNA-binding proteinchromosome CDS1198999 921 - 0.534202
ccmA ABC superfamily (membrane) heme exporter proteinchromosome CDS2353045 618 - 0.726537
ccmA heme exporter proteinchromosome CDS4017973 618 - 0.726537
ccmB heme exporter proteinchromosome CDS4017317 660 - 0.701515
ccmB ABC superfamily (membrane) heme exporter proteinchromosome CDS2352389 660 - 0.701515
ccmC ABC superfamily (membrane) heme exporter proteinchromosome CDS4016528 738 - 0.654472
ccmC heme exporter proteinchromosome CDS2351600 738 - 0.654472
ccmE periplasmic heme-dependent peroxidasechromosome CDS2350915 480 - 0.654167
ccmE periplasmic heme-dependent peroxidasechromosome CDS4015843 480 - 0.654167
ccmF cytochrome c-type biogenesis proteinchromosome CDS4013915 1932 - 0.681677
ccmF cytochrome c-type biogenesis proteinchromosome CDS2348987 1932 - 0.681677
ccmG heme lyase disulfide oxidoreductasechromosome CDS4013361 558 - 0.621864
ccmG heme lyase/disulfide oxidoreductasechromosome CDS2348433 558 - 0.621864
ccmH putative heme lyase subunitchromosome CDS2347393 1044 - 0.662835
ccmH putative heme lyase subunitchromosome CDS4012321 1044 - 0.678161
clpA ATP-binding subunit of serine proteasechromosome CDS1022698 2277 + 0.541941
clpB ATP-dependent proteasechromosome CDS2802116 2574 - 0.533023
clpP proteolytic subunit of clpA-clpP ATP-dependent serine proteasechromosome CDS503210 624 + 0.512821
clpX specificity component of clpA-clpP ATP-dependent serine protease, chaperonechromosome CDS504085 1272 + 0.528302
csgB minor curlin subunit precursorchromosome CDS1231133 456 + 0.434211
cydC cytochrome-related transporterchromosome CDS1031626 1722 - 0.570267
cydD cytochrome-related transporterchromosome CDS1033348 1767 - 0.565931
cyoE protohaeme IX farnesyltransferase (haeme O biosynthesis)chromosome CDS493354 891 - 0.537598
cypD peptidyl prolyl isomerasechromosome CDS508668 1872 + 0.524038
cysU thiosulfate transport proteinchromosome CDS2554592 834 - 0.558753
degQ serine endoproteasechromosome CDS3515417 1368 + 0.540936
degS periplasmic serine endoproteasechromosome CDS3516877 1071 + 0.544351
djlA DnaJ like chaperone proteinchromosome CDS108424 813 + 0.541205
dnaJ heat shock protein DnaJchromosome CDS13595 1140 + 0.540351
dnaK chaperone Hsp70chromosome CDS11593 1917 + 0.525822
dsbA periplasmic protein disulfide isomerase Ichromosome CDS4204199 624 + 0.503205
dsbB putative disulfide oxidoreductasechromosome CDS1908514 531 + 0.548023
dsbC protein disulfide isomerase IIchromosome CDS3203688 714 - 0.502801
dsbD thiol:disulfide interchange proteinchromosome CDS4567382 1704 - 0.565728
dsbG periplasmic disulfide isomerase, thiol-disulphide oxidasechromosome CDS669262 747 - 0.507363
fdhE putative formate dehydrogenase formation proteinchromosome CDS4242285 930 - 0.583871
fklB FKBP-type 22KD peptidyl-prolyl cis-trans isomerasechromosome CDS4633890 663 + 0.561086
fkpA FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS3604871 819 - 0.509158
flgA flagellar biosynthesis proteinchromosome CDS1257431 660 - 0.580303
flgJ flagellar biosynthesis proteinchromosome CDS1264453 951 + 0.562566
flgN flagellar biosynthesis proteinchromosome CDS1256619 423 - 0.536643
fliJ flagellar FliJ proteinchromosome CDS2061301 444 + 0.513514
fliS repressor of class 3a and 3b operons (RflA activity)chromosome CDS2050820 408 + 0.5
gcp putative O-sialoglycoprotein endopeptidasechromosome CDS3372814 1014 - 0.581854
glnD uridylyltransferasechromosome CDS250143 2673 - 0.561167
glnE adenylyl transferase for glutamine synthetasechromosome CDS3364040 2844 - 0.571027
grpE molecular chaparonechromosome CDS2821587 591 - 0.531303
grxA redox coenzyme for glutathione-dependent ribonucleotide reductase glutaredoxin1chromosome CDS945074 264 - 0.431818
grxB glutaredoxin 2chromosome CDS1250351 648 - 0.464506
grxC glutaredoxin 3chromosome CDS3896547 252 - 0.511905
gst glutathionine S-transferasechromosome CDS1525740 606 - 0.516502
hflB ATP-dependent zinc-metallo proteasechromosome CDS3464690 1935 - 0.557623
hflC component of modulator for protease specific for FtsH phage lambda cII repressorchromosome CDS4607713 1005 + 0.542289
hflK component of modulator for protease specific for FtsH phage lambda cII repressorchromosome CDS4606451 1260 + 0.566667
hopD leader peptidase HopDchromosome CDS3596910 468 + 0.529915
hscA chaperone proteinchromosome CDS2678197 1851 - 0.594273
hscB co-chaperone protein Hsc20chromosome CDS2680060 516 - 0.544574
hscC putative heatshock protein, homolog of hsp70 in Hsc66 subfamilychromosome CDS722533 1680 - 0.525595
hslJ heat shock protein hslJchromosome CDS1741129 411 + 0.523114
hslU ATPase component of the HslUV proteasechromosome CDS4299150 1332 - 0.530781
hslV peptidase component of the HslUV proteasechromosome CDS4300491 531 - 0.544256
htpG chaperone Hsp90, heat shock protein C 62.5chromosome CDS543902 1899 + 0.528173
htpX heat shock proteinchromosome CDS1940059 882 - 0.529478
htrA periplasmic serine protease Do, heat shock proteinchromosome CDS244492 1428 + 0.54902
hybG hydrogenase-2 operon proteinchromosome CDS3307202 249 - 0.526104
hypB hydrogenase-3 accessory proteinchromosome CDS3000223 873 + 0.573883
hypC putative hydrogenase expression/formation proteinchromosome CDS3001086 273 + 0.556777
hypD putative hydrogenase expression/formation proteinchromosome CDS3001358 1119 + 0.579982
hypE putative hydrogenase expression/formation proteinchromosome CDS3002515 969 + 0.593395
hypF hydrogenase maturation proteinchromosome CDS2987737 2241 - 0.604195
ibpA small heat shock proteinchromosome CDS4009916 414 - 0.5
ibpB small heat shock proteinchromosome CDS4009378 429 - 0.517483
lon DNA-binding proteinchromosome CDS505542 2355 + 0.540127
lonH putative proteasechromosome CDS1158495 1761 - 0.534355
lpxO putative dioxygenase for synthesis of lipidchromosome CDS4527852 909 - 0.504951
malM periplasmic protein of mal regulonchromosome CDS4453601 918 + 0.555556
mopA chaperone Hsp60 with peptide-dependent ATPase activitychromosome CDS4575111 1647 + 0.544019
mopB chaperone Hsp10chromosome CDS4574774 294 + 0.469388
msrA peptide methionine sulfoxide reductasechromosome CDS4645202 639 - 0.543036
nrdG anaerobic ribonucleotide reductase activating proteinchromosome CDS4691968 465 - 0.565591
nrdH glutaredoxin-like proteinchromosome CDS2951857 246 + 0.552846
nrfE formate-dependent nitrite reductasechromosome CDS4519832 2223 + 0.588394
nrfG component of formate-dependent nitrite reductase complexchromosome CDS4522051 621 + 0.573269
osmC putative resistance proteinchromosome CDS1644237 432 - 0.516204
pcm L-isoaspartate protein carboxylmethyltransferase type IIchromosome CDS3067858 627 - 0.566188
pflA pyruvate formate lyase activating enzyme 1chromosome CDS1052688 825 - 0.481212
pflC putative pyruvate formate lyase activating enzyme 2chromosome CDS4331077 879 + 0.549488
pflE putative pyruvate formate lyase activating enzymechromosome CDS913785 900 - 0.555556
phnU 2-aminoethylphosphonate transporter, memrane componentchromosome CDS480160 861 - 0.57259
ppiA peptidyl-prolyl cis-trans isomerase Achromosome CDS3621222 573 - 0.507853
ppiB peptidyl-prolyl cis-trans isomerase B (rotamase B)chromosome CDS598468 495 - 0.49697
ppiC peptidyl-prolyl cis-trans isomerase Cchromosome CDS4118944 282 - 0.460993
prgI cytoplasmic cell invasion proteinchromosome CDS3016075 243 - 0.460905
ptr protease IIIchromosome CDS3149646 2889 - 0.520941
radA putative ATP-dependent proteasechromosome CDS4834276 1383 + 0.596529
rpsV 30S ribosomal subunit protein S22chromosome CDS1645491 144 + 0.506944
scsB suppression of copper sensitivity: lipoprotein modification in lgt mutants of E. colichromosome CDS1200565 1887 + 0.580816
scsC suppression of copper sensitivity: lipoprotein modification in lgt mutants of E. colichromosome CDS1202448 624 + 0.522436
scsD suppression of copper sensitivity: lipoprotein modification in lgt mutants of E. colichromosome CDS1203061 507 + 0.619329
slpA FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)chromosome CDS57344 450 + 0.546667
slyD FKBP-type peptidyl prolyl cis-trans isomerasechromosome CDS3606315 591 - 0.558376
smpB small protein Bchromosome CDS2826484 483 + 0.494824
sohB putative peptidasechromosome CDS1813085 1047 - 0.540592
sppA protease IVchromosome CDS1372910 1857 - 0.557889
sspA stringent starvation protein Achromosome CDS3510553 639 - 0.516432
sufB putative ABC transporterchromosome CDS1452692 1488 + 0.52621
sufC putative transport proteinchromosome CDS1454196 747 + 0.526104
sufD iron-sulfur component of FhuF stability proteinchromosome CDS1454917 1272 + 0.537736
surA peptidyl-prolyl cis-trans isomerasechromosome CDS104470 1287 - 0.543901
tig peptidyl-prolyl cis/trans isomerasechromosome CDS501665 1299 + 0.524249
tpx thiol peroxidasechromosome CDS1775584 507 + 0.500986
trxA thioredoxin 1chromosome CDS4124836 330 + 0.493939
trxB thioredoxin reductasechromosome CDS1035228 969 - 0.550052
trxC thioredoxin 2, redox factorchromosome CDS2788654 420 + 0.535714
ybbJ putative membrane protein implicated in regulation of membrane protease activitychromosome CDS560973 453 - 0.607064
ybbK putative inner membrane proteinchromosome CDS561422 918 - 0.546841
ybbN putative thioredoxin proteinchromosome CDS564015 855 - 0.555556
ybeL putative cytoplasmic proteinchromosome CDS716566 474 + 0.556962
ybeS putative molecular chaperone, DnaJ familychromosome CDS718902 1434 + 0.548814
ybeV putative molecular chaperone, DnaJ familychromosome CDS721039 1473 + 0.541073
ycaL putative Zn-dependent protease with chaperone functionchromosome CDS1064060 762 + 0.510499
ydcP putative collagenasechromosome CDS1693636 1965 - 0.5257
ydhD putative glutaredoxin proteinchromosome CDS1511277 348 + 0.5
ydhH putative cytoplasmic proteinchromosome CDS1521107 1122 + 0.57754
yeaA hypothetical proteinchromosome CDS1370000 444 + 0.511261
yeaZ putative molecular chaperonechromosome CDS1917765 696 - 0.602012
yedF putative transcriptional regulatorchromosome CDS2055004 234 + 0.491453
yegD putative heat shock protein (Hsp70/DnaK)chromosome CDS2212491 1353 + 0.597191
yegQ putative proteasechromosome CDS2229684 1362 + 0.544787
yegU putative glycohydrolasechromosome CDS2237539 1005 + 0.585075
yfcF putative glutathione-S-transferasechromosome CDS2459626 645 - 0.562791
yfcG putative glutathione S-transferasechromosome CDS2460413 648 + 0.532407
ygcF putative organic radical activating enzymeschromosome CDS3096557 672 - 0.508929
yggG putative Zn-dependent proteases with possible chaperone functionchromosome CDS3238660 759 + 0.549407
yggX putative cytoplasmic proteinchromosome CDS3269765 276 + 0.474638
yghU putative glutathione S-transferasechromosome CDS3304430 867 + 0.545559
yhbU putative proteasechromosome CDS3440273 996 + 0.590361
yhbV putative proteasechromosome CDS3441259 897 + 0.564103
yhfA putative inner membrane proteinchromosome CDS3614933 405 - 0.538272
yhgI putative thioredoxin-like proteins and domainchromosome CDS3669438 576 + 0.538194
yhhP small ubiquitous protein required for normal growthchromosome CDS3746509 246 - 0.536585
yibF putative glutathione S-transferasechromosome CDS3874183 609 - 0.550082
yifB putative magnesium chelatase, subunit ChlIchromosome CDS4106863 1521 - 0.52597
yjjW pyruvate formate lyase activating enzymechromosome CDS4818786 864 - 0.559028
yliJ putative glutathione S-transferasechromosome CDS934627 627 - 0.54386
yqjG putative glutathione S-transferasechromosome CDS3398498 987 + 0.52381
yrfI heat shock protein 33chromosome CDS3653483 885 + 0.540113