Gene list
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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Shigella flexneri 2a str. 301, 301
Number of genes found: 143
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella flexneri 2a str. 301, 301 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SF2924 | putative serine protease | chromosome | CDS | 3015838 | 909 | + | 0.488449 |
NA | SF1667 | orf, conserved hypothetical protein | chromosome | CDS | 1696595 | 1110 | - | 0.547748 |
NA | SF1600 | orf, conserved hypothetical protein | chromosome | CDS | 1628557 | 492 | - | 0.546748 |
NA | SF4279 | similar to FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) | chromosome | CDS | 4458423 | 672 | - | 0.549107 |
NA | SF3036 | orf, conserved hypothetical protein | chromosome | CDS | 3133996 | 915 | + | 0.535519 |
NA | SF3007 | orf, conserved hypothetical protein | chromosome | CDS | 3103149 | 468 | - | 0.399573 |
NA | SF0703 | head-tail preconnector gp5 | chromosome | CDS | 729846 | 1506 | + | 0.588977 |
NA | SF3274 | putative periplasmic serine protease Do, heat shock protein HtrA | chromosome | CDS | 3368574 | 1200 | + | 0.5125 |
NA | SF0955 | putative ATP-dependent protease | chromosome | CDS | 1003607 | 1761 | - | 0.51732 |
NA | SF1904 | putative serine protease | chromosome | CDS | 1941077 | 828 | + | 0.518116 |
NA | SF1544 | antitermination protein, homolog of cryptic prophage | chromosome | CDS | 1578402 | 822 | - | 0.489051 |
NA | SF3510 | orf, conserved hypothetical protein | chromosome | CDS | 3602935 | 513 | - | 0.467836 |
aat | SF0844 | leucyl, phenylalanyl-tRNA-protein transferase | chromosome | CDS | 878100 | 705 | - | 0.539007 |
ahpC | SF0524 | alkyl hydroperoxide reductase, C22 subunit | chromosome | CDS | 544792 | 564 | + | 0.498227 |
ahpF | SF0525 | alkyl hydroperoxide reductase, F52a subunit | chromosome | CDS | 545570 | 1596 | + | 0.524436 |
bcp | SF2523 | bacterioferritin comigratory protein | chromosome | CDS | 2588536 | 471 | + | 0.492569 |
btuE | SF1521 | Vitamin B12 transport periplasmic protein BtuE | chromosome | CDS | 1552898 | 552 | + | 0.492754 |
cbpA | SF1004 | curved DNA-binding protein | chromosome | CDS | 1051156 | 921 | - | 0.527687 |
ccmA | SF2285 | ATP-binding protein of heme exporter A | chromosome | CDS | 2319022 | 624 | - | 0.55609 |
ccmB | SF2284 | heme exporter protein B, cytochrome c-type biogenesis protein | chromosome | CDS | 2318363 | 663 | - | 0.556561 |
ccmC | SF2283 | heme exporter protein C | chromosome | CDS | 2317584 | 738 | - | 0.555556 |
ccmE | SF2281 | cytochrome-c biosynthesis heme-carrier protein ccmE | chromosome | CDS | 2316902 | 480 | - | 0.54375 |
ccmF | SF2280 | cytochrome c-type biogenesis protein | chromosome | CDS | 2314962 | 1944 | - | 0.569959 |
ccmH | SF2278 | possible subunit of heme lyase | chromosome | CDS | 2313359 | 1053 | - | 0.545109 |
clpA | SF0842 | ATP-binding component of serine protease | chromosome | CDS | 874577 | 2277 | + | 0.526131 |
clpB | SF2655 | heat shock protein | chromosome | CDS | 2731536 | 2574 | + | 0.513597 |
clpP | SF0382 | ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 | chromosome | CDS | 391777 | 624 | + | 0.509615 |
clpX | SF0383 | ATP-dependent specificity component of clpP serine protease | chromosome | CDS | 392526 | 1275 | + | 0.517647 |
cydC | SF0845 | ATP-binding component of cytochrome-related transport | chromosome | CDS | 878846 | 1722 | - | 0.534262 |
cydD | SF0846 | ATP-binding component of cytochrome-related transport | chromosome | CDS | 880568 | 1767 | - | 0.532541 |
cyoE | SF0369 | protoheme IX farnesyltransferase | chromosome | CDS | 380467 | 888 | - | 0.533784 |
cysU | SF2478 | sulfate, thiosulfate transport system permease T protein | chromosome | CDS | 2538983 | 834 | - | 0.549161 |
degS | SF3275 | protease | chromosome | CDS | 3370053 | 1068 | + | 0.525281 |
dnaJ | SF0015 | chaperone with DnaK; heat shock protein | chromosome | CDS | 14167 | 1131 | + | 0.55084 |
dnaK | SF0014 | chaperone Hsp70; autoregulated heat shock protein | chromosome | CDS | 12162 | 1917 | + | 0.511737 |
dsbA | SF3931 | protein disulfide isomerase I | chromosome | CDS | 4056106 | 627 | + | 0.480064 |
dsbB | SF1174 | disulfide bond formation protein dsbB | chromosome | CDS | 1216191 | 531 | - | 0.52354 |
dsbC | SF2879 | protein disulfide isomerase II | chromosome | CDS | 2972027 | 711 | - | 0.483826 |
dsbD | SF4290 | thiol:disulfide interchange protein | chromosome | CDS | 4466965 | 1698 | - | 0.540047 |
dsbE | SF2279 | disulfide oxidoreductase | chromosome | CDS | 2314408 | 558 | - | 0.543011 |
dsbG | SF0523 | thiol:disulfide interchange protein | chromosome | CDS | 543674 | 807 | - | 0.459727 |
fdhE | SF3967 | FdhE protein | chromosome | CDS | 4095709 | 930 | - | 0.553763 |
fkpA | SF3365 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) | chromosome | CDS | 3445885 | 813 | - | 0.477245 |
flgA | SF1078 | flagellar basal body P-ring protein FlgA precursor | chromosome | CDS | 1117965 | 660 | - | 0.521212 |
flgJ | SF1085 | flagellar basal body protein FlgJ | chromosome | CDS | 1125093 | 942 | + | 0.539278 |
flgN | SF1076 | flagella synthesis protein FlgN | chromosome | CDS | 1117175 | 417 | - | 0.479616 |
fliJ | SF1987 | flagellar fliJ protein | chromosome | CDS | 2017916 | 345 | + | 0.498551 |
fliS | SF1968 | flagellar protein FliS | chromosome | CDS | 2001449 | 411 | + | 0.481752 |
ftsH | SF3218 | Zn metallo-peptidase, integral membrane cell division protein | chromosome | CDS | 3317184 | 1935 | - | 0.534884 |
glnD | SF0157 | PII-uridylyltransferase | chromosome | CDS | 176922 | 2673 | - | 0.534231 |
glnE | SF3094 | adenylylating enzyme for glutamine synthetase | chromosome | CDS | 3185926 | 2841 | - | 0.552974 |
grpE | SF2673 | heat shock protein GrpE | chromosome | CDS | 2748655 | 594 | - | 0.501683 |
grxA | SF0802 | glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase | chromosome | CDS | 835913 | 258 | - | 0.449612 |
grxB | SF1070 | glutaredoxin 2 | chromosome | CDS | 1111168 | 648 | - | 0.487654 |
grxC | SF3649 | glutaredoxin 3 | chromosome | CDS | 3756787 | 252 | - | 0.511905 |
gst | SF1660 | glutathionine S-transferase | chromosome | CDS | 1691095 | 606 | + | 0.5033 |
hflC | SF4330 | protease specific for phage lambda cII repressor | chromosome | CDS | 4508119 | 1005 | + | 0.526368 |
hflK | SF4329 | protease specific for phage lambda cII repressor | chromosome | CDS | 4506857 | 1260 | + | 0.561905 |
hopD | SF3354 | putative leader peptidase | chromosome | CDS | 3438033 | 288 | + | 0.465278 |
hscA | SF2573 | Hsp70 protein family heat shock protein, chaperone | chromosome | CDS | 2642120 | 1851 | - | 0.575905 |
hslU | SF4009 | heat shock protein HslVU, ATPase subunit | chromosome | CDS | 4135494 | 1332 | - | 0.523273 |
hslV | SF4010 | heat shock protein HslVU, proteasome-related peptidase subunit | chromosome | CDS | 4136835 | 531 | - | 0.525424 |
htpG | SF0418 | chaperone Hsp90, heat shock protein C 62.5 | chromosome | CDS | 431645 | 1875 | + | 0.5264 |
htpX | SF1396 | heat shock protein, integral membrane protein | chromosome | CDS | 1436948 | 879 | + | 0.533561 |
htrA | SF0153 | periplasmic serine protease Do, heat shock protein HtrA | chromosome | CDS | 172543 | 1425 | + | 0.539649 |
hyaE | SF0977 | Hydrogenase-1 operon protein hyaE | chromosome | CDS | 1024276 | 399 | + | 0.568922 |
hybG | SF3037 | hydrogenase-2 component | chromosome | CDS | 3135033 | 249 | - | 0.534137 |
hypB | SF2744 | guanine-nucleotide binding protein | chromosome | CDS | 2819350 | 873 | + | 0.553265 |
hypC | SF2745 | hydrogenase isoenzyme HypC | chromosome | CDS | 2820213 | 273 | + | 0.553114 |
hypD | SF2746 | hydrogenase isoenzyme HypD | chromosome | CDS | 2820485 | 1122 | + | 0.553476 |
hypE | SF2747 | hypE product | chromosome | CDS | 2821645 | 969 | + | 0.575851 |
hypF | SF2735 | transcriptional regulatory protein | chromosome | CDS | 2808846 | 2253 | - | 0.575677 |
ibpA | SF3776 | heat shock protein | chromosome | CDS | 3885357 | 414 | + | 0.47343 |
ibpB | SF3777 | heat shock protein | chromosome | CDS | 3885882 | 429 | + | 0.48951 |
lon | SF0384 | DNA-binding, ATP-dependent protease La; heat shock K-protein | chromosome | CDS | 393988 | 2355 | + | 0.523567 |
mopA | SF4297 | GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein | chromosome | CDS | 4474645 | 1647 | + | 0.530662 |
mopB | SF4296 | GroES, 10 Kd chaperone | chromosome | CDS | 4474308 | 294 | + | 0.493197 |
msrA | SF4268 | peptide methionine sulfoxide reductase | chromosome | CDS | 4445822 | 639 | + | 0.541471 |
mxiG | CP0136 | MxiG, component of the Mxi-Spa secretion machinery, contains one transmembrane segment | pCP301 | CDS | 118817 | 1116 | + | 0.310932 |
nrdG | SF4253 | anaerobic ribonucleotide reductase activating protein | chromosome | CDS | 4426754 | 465 | + | 0.505376 |
nrdH | SF2701 | glutaredoxin-like protein | chromosome | CDS | 2774617 | 246 | + | 0.528455 |
nrfE | SF4134 | formate-dependent nitrite reductase | chromosome | CDS | 4302102 | 1659 | + | 0.571429 |
nrfF | SF4135 | component of formate-dependent nitrite reductase complex | chromosome | CDS | 4303753 | 384 | + | 0.515625 |
nrfG | SF4136 | component of formate-dependent nitrite reductase complex | chromosome | CDS | 4304133 | 597 | + | 0.522613 |
osmC | SF1743 | osmotically inducible protein | chromosome | CDS | 1780325 | 432 | - | 0.502315 |
pcm | SF2766 | L-isoaspartate protein carboxylmethyltransferase type II | chromosome | CDS | 2841030 | 627 | - | 0.535885 |
pflA | SF0897 | pyruvate formate lyase activating enzyme 1 | chromosome | CDS | 932758 | 741 | - | 0.495277 |
pflC | SF4029 | probable pyruvate formate lyase activating enzyme 2 | chromosome | CDS | 4161325 | 879 | + | 0.54835 |
ppiA | SF3382 | peptidyl-prolyl cis-trans isomerase A (rotamase A) | chromosome | CDS | 3460935 | 582 | - | 0.510309 |
ppiB | SF0456 | peptidyl-prolyl cis-trans isomerase B (rotamase B) | chromosome | CDS | 472466 | 495 | - | 0.476768 |
ppiC | SF3850 | peptidyl-prolyl cis-trans isomerase C (rotamase C) | chromosome | CDS | 3968876 | 282 | - | 0.510638 |
ptr | SF2832 | protease III | chromosome | CDS | 2916321 | 2889 | - | 0.511596 |
slpA | SF0025 | probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) | chromosome | CDS | 25256 | 450 | + | 0.548889 |
slpA | SF0024 | probable FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) | chromosome | CDS | 24749 | 450 | - | 0.548889 |
slyD | SF3367 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) | chromosome | CDS | 3447185 | 591 | - | 0.548223 |
smpB | SF2679 | ssrA(tmRNA)-binding protein | chromosome | CDS | 2753436 | 483 | + | 0.515528 |
sms | SF4421 | probable ATP-dependent protease | chromosome | CDS | 4591518 | 1383 | + | 0.576283 |
sohB | SF1274 | putative protease | chromosome | CDS | 1323616 | 1050 | + | 0.505714 |
sppA | SF1457 | protease IV, a signal peptide peptidase | chromosome | CDS | 1492060 | 1857 | - | 0.519655 |
sspA | SF3269 | regulator of transcription, stringent starvation protein A | chromosome | CDS | 3364655 | 639 | - | 0.536776 |
stbA | CP0195 | plasmid stable inheritance protein | pCP301 | CDS | 161854 | 960 | - | 0.398958 |
surA | SF0050 | survival protein | chromosome | CDS | 52734 | 1287 | - | 0.538462 |
tig | SF0381 | trigger factor | chromosome | CDS | 390232 | 1299 | + | 0.511932 |
tpx | SF1330 | thiol peroxidase | chromosome | CDS | 1383186 | 507 | - | 0.514793 |
trxA | SF3854 | thioredoxin 1 | chromosome | CDS | 3974272 | 384 | + | 0.5 |
trxB | SF0847 | thioredoxin reductase | chromosome | CDS | 882457 | 966 | - | 0.534162 |
trxC | SF2644 | putative thioredoxin-like protein | chromosome | CDS | 2715776 | 420 | + | 0.495238 |
yabH | SF0052 | putative DNA-binding protein | chromosome | CDS | 56682 | 816 | + | 0.529412 |
ybaU | SF0386 | putative protease maturation protein | chromosome | CDS | 397015 | 1872 | + | 0.521902 |
ybbJ | SF0433 | orf, conserved hypothetical protein | chromosome | CDS | 450721 | 456 | - | 0.576754 |
ybbK | SF0434 | putative protease | chromosome | CDS | 451176 | 918 | - | 0.523965 |
ybbN | SF0437 | putative thioredoxin-like protein | chromosome | CDS | 453745 | 891 | - | 0.555556 |
ybeS | SF0635 | putative enzyme | chromosome | CDS | 671678 | 1428 | - | 0.485294 |
ybfN | SF0611 | orf, conserved hypothetical protein | chromosome | CDS | 641730 | 327 | - | 0.489297 |
ybiY | SF0774 | putative pyruvate formate-lyase 2 activating enzyme | chromosome | CDS | 806672 | 927 | - | 0.542611 |
ycaL | SF0905 | putative heat shock protein | chromosome | CDS | 944055 | 765 | + | 0.495425 |
ydhD | SF1682 | orf, conserved hypothetical protein | chromosome | CDS | 1713446 | 348 | - | 0.525862 |
yeaA | SF1445 | orf, conserved hypothetical protein | chromosome | CDS | 1480321 | 414 | + | 0.478261 |
yeaZ | SF1421 | orf, conserved hypothetical protein | chromosome | CDS | 1459020 | 696 | + | 0.558908 |
yedF | SF1973 | orf, conserved hypothetical protein | chromosome | CDS | 2005625 | 234 | + | 0.482906 |
yeeD | SF2071 | orf, conserved hypothetical protein | chromosome | CDS | 2089796 | 228 | - | 0.513158 |
yegQ | SF2146 | orf, conserved hypothetical protein | chromosome | CDS | 2172450 | 1362 | + | 0.540382 |
yfcF | SF2377 | orf, conserved hypothetical protein | chromosome | CDS | 2427954 | 645 | - | 0.51938 |
yfcG | SF2378 | putative S-transferase | chromosome | CDS | 2428734 | 648 | + | 0.509259 |
yfhE | SF2574 | orf, conserved hypothetical protein | chromosome | CDS | 2643987 | 516 | - | 0.51938 |
ygcF | SF2790 | orf, conserved hypothetical protein | chromosome | CDS | 2863632 | 672 | - | 0.513393 |
yggG | SF2926 | orf, conserved hypothetical protein | chromosome | CDS | 3018935 | 885 | + | 0.520904 |
yggX | SF2959 | orf, conserved hypothetical protein | chromosome | CDS | 3046192 | 276 | + | 0.474638 |
ygjD | SF3105 | putative O-sialoglycoprotein endopeptidase | chromosome | CDS | 3198568 | 1014 | - | 0.57002 |
yhbU | SF3199 | putative collagenase | chromosome | CDS | 3293692 | 996 | + | 0.571285 |
yhbV | SF3200 | orf, conserved hypothetical protein | chromosome | CDS | 3294696 | 879 | + | 0.558589 |
yhfA | SF3375 | orf, conserved hypothetical protein | chromosome | CDS | 3454624 | 405 | - | 0.518519 |
yhgI | SF3437 | orf, conserved hypothetical protein | chromosome | CDS | 3516919 | 576 | + | 0.53125 |
yhhP | SF3488 | orf, conserved hypothetical protein | chromosome | CDS | 3579273 | 246 | - | 0.54065 |
yibF | SF3630 | putative S-transferase | chromosome | CDS | 3735644 | 609 | - | 0.528736 |
yiiF | SF3966 | orf, conserved hypothetical protein | chromosome | CDS | 4095137 | 243 | + | 0.45679 |
yjjW | SF4411 | putative activating enzyme | chromosome | CDS | 4581339 | 864 | - | 0.545139 |
yliJ | SF0788 | putative transferase | chromosome | CDS | 824010 | 633 | - | 0.519747 |
ynhC | SF1711 | orf, conserved hypothetical protein | chromosome | CDS | 1743435 | 1272 | - | 0.529874 |
ynhD | SF1712 | putative ATP-binding component of a transport system | chromosome | CDS | 1744681 | 747 | - | 0.502008 |
ynhE | SF1713 | orf, conserved hypothetical protein | chromosome | CDS | 1745437 | 1488 | - | 0.517473 |
yqjG | SF3145 | putative transferase | chromosome | CDS | 3242892 | 987 | + | 0.515704 |
yrfI | SF3419 | orf, conserved hypothetical protein | chromosome | CDS | 3498989 | 870 | + | 0.524138 |