Gene list
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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Desulfotalea psychrophila LSv54, LSv54
Number of genes found: 107
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| Desulfotalea psychrophila LSv54, LSv54 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | DP1642 | related to GrpE protein (HSP-70 cofactor) | RecName: Full=Protein GrpE; AltName: Full=HSP-70 cofactor; | chromosome | CDS | 1834655 | 597 | + | 0.472362 |
| NA | DP0522 | probable SsrA-binding protein | RecName: Full=SsrA-binding protein; | chromosome | CDS | 569639 | 456 | - | 0.464912 |
| NA | DP0996 | related to peptidyl-prolyl cis-trans isomerase D | SubName: Full=Related to peptidyl-prolyl cis-trans isomerase D; | chromosome | CDS | 1126452 | 1905 | - | 0.445144 |
| NA | DP2641 | related to peptidyl-prolyl cis-trans isomerase (FKBP-type) | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; | chromosome | CDS | 3002951 | 444 | + | 0.466216 |
| NA | DP0949 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1056704 | 699 | + | 0.479256 |
| NA | DPPB02 | unknown protein | SubName: Full=Uncharacterized protein; | LSv54, large plasmid | CDS | 3109 | 387 | - | 0.395349 |
| NA | DP2839 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3202749 | 795 | - | 0.483019 |
| NA | DP1866 | related to low molecular weight heat shock protein (Hsp17) | SubName: Full=Related to low molecular weight heat shock protein (Hsp17); | chromosome | CDS | 2100076 | 471 | + | 0.43949 |
| NA | DP0867 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 973324 | 357 | - | 0.470588 |
| NA | DP3097 | probable cell division protein FtsH | RecName: Full=ATP-dependent zinc metalloprotease FtsH; EC=3.4.24.-; | chromosome | CDS | 3497705 | 2055 | + | 0.492944 |
| NA | DP1965 | related to chaperone protein DnaJ | SubName: Full=Related to chaperone protein DnaJ; | chromosome | CDS | 2232142 | 966 | - | 0.467909 |
| NA | DP0140 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 157390 | 492 | - | 0.457317 |
| NA | DP0190 | probable chaperonin GroEL | RecName: Full=60 kDa chaperonin; AltName: Full=GroEL protein; AltName: Full=Protein Cpn60; | chromosome | CDS | 205355 | 1557 | - | 0.486834 |
| NA | DP2710 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3071907 | 249 | - | 0.514056 |
| NA | DP2851 | related to collagenase | SubName: Full=Related to collagenase; | chromosome | CDS | 3220198 | 2283 | + | 0.469558 |
| NA | DP1227 | probable peptide methionine sulfoxide reductase | SubName: Full=Probable peptide methionine sulfoxide reductase; | chromosome | CDS | 1369011 | 1101 | + | 0.489555 |
| NA | DP0810 | probable thioredoxin | RecName: Full=Thioredoxin; | chromosome | CDS | 913568 | 327 | - | 0.458716 |
| NA | DP2695 | probable ATP-dependent protease, ATP-binding subunit HslU | RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU; | chromosome | CDS | 3056616 | 1374 | - | 0.492722 |
| NA | DP0929 | probable [Protein-PII] uridylyltransferase | RecName: Full=Bifunctional uridylyltransferase/uridylyl-removing enzyme; Short=UTase/UR; AltName: Full=Bifunctional [protein-PII] modification enzyme; AltName: Full=Bifunctional nitrogen sensor protein; | chromosome | CDS | 1039992 | 2571 | + | 0.485025 |
| NA | DP0968 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1084463 | 663 | - | 0.503771 |
| NA | DP2709 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3071499 | 354 | - | 0.516949 |
| NA | DP2977 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3365961 | 735 | - | 0.522449 |
| NA | DP0275 | probable protein-L-isoaspartate(D-aspartate) O-methyltransferase | RecName: Full=Protein-L-isoaspartate O-methyltransferase; EC=2.1.1.77; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase; Short=PIMT; | chromosome | CDS | 296998 | 645 | - | 0.47907 |
| NA | DP1703 | related to heat shock protein DnaJ (Hsp40) | SubName: Full=Related to heat shock protein DnaJ (Hsp40); | chromosome | CDS | 1911878 | 786 | + | 0.473282 |
| NA | DP3019 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3416711 | 576 | + | 0.385417 |
| NA | DP2329 | conserved hypothetical protein, probably cold-shock inducible | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2660121 | 771 | - | 0.478599 |
| NA | DP0948 | probable thioredoxin | RecName: Full=Thioredoxin; | chromosome | CDS | 1056356 | 345 | + | 0.457971 |
| NA | DP0166 | conserved hypothetical protein | RecName: Full=7-carboxy-7-deazaguanine synthase; Short=CDG synthase; EC=4.3.99.3; AltName: Full=Queuosine biosynthesis protein QueE; | chromosome | CDS | 184727 | 639 | + | 0.511737 |
| NA | DP3099 | hypothetical membrane protein | SubName: Full=Hypothetical membrane protein; | chromosome | CDS | 3500985 | 759 | - | 0.482213 |
| NA | DP3115 | related to peptidyl-prolyl cis-trans isomerase (FKBP-type) | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; | chromosome | CDS | 3518926 | 432 | - | 0.488426 |
| NA | DP0719 | probable DNA repair protein (RadA) | RecName: Full=DNA repair protein radA; | chromosome | CDS | 794672 | 1356 | + | 0.483038 |
| NA | DP1658 | related to flagellar protein FliS | SubName: Full=Related to flagellar protein FliS; | chromosome | CDS | 1850502 | 615 | - | 0.508943 |
| NA | DP2538 | probable ATP-dependent Clp protease, proteolytic subunit (ClpP) | RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; | chromosome | CDS | 2893478 | 642 | - | 0.436137 |
| NA | DP1162 | related to glycoprotein endopeptidase | SubName: Full=Related to glycoprotein endopeptidase; | chromosome | CDS | 1295130 | 729 | + | 0.55144 |
| NA | DP2685 | related to flagellar muramidase protein (FlgJ) | SubName: Full=Related to flagellar muramidase protein (FlgJ); | chromosome | CDS | 3046772 | 315 | + | 0.428571 |
| NA | DP1682 | related to cytochrome c-type forming protein Ccs1 | SubName: Full=Related to cytochrome c-type forming protein Ccs1; | chromosome | CDS | 1883182 | 1314 | - | 0.451294 |
| NA | DP0594 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 651542 | 930 | - | 0.517204 |
| NA | DP0560 | related to 33 kDa chaperonin (Hsp33) | RecName: Full=33 kDa chaperonin; AltName: Full=Heat shock protein 33 homolog; Short=HSP33; | chromosome | CDS | 612772 | 885 | + | 0.526554 |
| NA | DP3084 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3482450 | 1002 | + | 0.431138 |
| NA | DP1092 | probable lambda CII stability-governing protein (HflK) | SubName: Full=Probable lambda CII stability-governing protein (HflK); | chromosome | CDS | 1232518 | 1140 | - | 0.474561 |
| NA | DP2922 | probable ATP-dependent protease La | SubName: Full=Probable ATP-dependent protease La; | chromosome | CDS | 3304256 | 975 | - | 0.469744 |
| NA | DP0276 | related to heat shock protein Hsp90 | RecName: Full=Chaperone protein HtpG; AltName: Full=Heat shock protein HtpG; AltName: Full=High temperature protein G; | chromosome | CDS | 298227 | 1869 | - | 0.477261 |
| NA | DP2268 | probable competence protein ComM | SubName: Full=Probable competence protein ComM; | chromosome | CDS | 2602337 | 1506 | + | 0.529216 |
| NA | DP1869 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2103196 | 942 | - | 0.488323 |
| NA | DP0263 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 282635 | 1017 | - | 0.549656 |
| NA | DPPB25 | probable conjugal transfer protein TraF precursor | SubName: Full=Probable conjugal transfer protein TraF; | LSv54, large plasmid | CDS | 26858 | 450 | + | 0.426667 |
| NA | DP1215 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1355806 | 858 | + | 0.472028 |
| NA | DP0803 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 903530 | 2337 | - | 0.454857 |
| NA | DP1798 | probable thiol peroxidase | RecName: Full=Probable thiol peroxidase; EC=1.11.1.-; | chromosome | CDS | 2030875 | 504 | + | 0.440476 |
| NA | DP1583 | related to capsid protein GPC of phage lambda | SubName: Full=Related to capsid protein GPC of phage lambda; | chromosome | CDS | 1767846 | 1302 | + | 0.568356 |
| NA | DP1645 | probable peptidyl-prolyl cis-trans isomerase | RecName: Full=Peptidyl-prolyl cis-trans isomerase; | chromosome | CDS | 1838556 | 1035 | - | 0.48599 |
| NA | DP0755 | probable serine protease DegQ [Precursor] | SubName: Full=Probable serine protease DegQ [Precursor]; | chromosome | CDS | 852337 | 1455 | + | 0.484536 |
| NA | DP2199 | related to proteinase IV | RecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; | chromosome | CDS | 2523172 | 1821 | + | 0.447007 |
| NA | DP1903 | related to leucyl/phenylalanyl-tRNA-protein transferase | RecName: Full=Leucyl/phenylalanyl-tRNA--protein transferase; EC=2.3.2.6; AltName: Full=L/F-transferase; AltName: Full=Leucyltransferase; AltName: Full=Phenyalanyltransferase; | chromosome | CDS | 2142041 | 702 | + | 0.452991 |
| NA | DP0497 | related to hydrogenase expression/formation protein (HypE) | SubName: Full=Related to hydrogenase expression/formation protein (HypE); | chromosome | CDS | 528845 | 1038 | - | 0.529865 |
| NA | DP3080 | related to cytochrome c biogenesis protein CcsA | SubName: Full=Related to cytochrome c biogenesis protein CcsA; | chromosome | CDS | 3479207 | 822 | - | 0.448905 |
| NA | DP0315 | related to peptide methionine sulfoxide reductase | RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; EC=1.8.4.11; AltName: Full=Peptide-methionine (S)-S-oxide reductase; | chromosome | CDS | 343405 | 585 | + | 0.482051 |
| NA | DP3083 | related to cytochrome c biogenesis protein (TlpA) | SubName: Full=Related to cytochrome c biogenesis protein (TlpA); | chromosome | CDS | 3481810 | 504 | - | 0.426587 |
| NA | DP0623 | probable proteinase (collagenase) precursor | SubName: Full=Probable proteinase (Collagenase); | chromosome | CDS | 680771 | 1812 | - | 0.487859 |
| NA | DP2536 | probable ATP-dependent protease La | RecName: Full=Lon protease 2; EC=3.4.21.53; AltName: Full=ATP-dependent protease La 2; | chromosome | CDS | 2889662 | 2325 | - | 0.484731 |
| NA | DP1729 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1946206 | 576 | + | 0.486111 |
| NA | DP1557 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1737895 | 378 | - | 0.470899 |
| NA | DP2953 | probable protease | SubName: Full=Probable protease; | chromosome | CDS | 3342973 | 1275 | - | 0.506667 |
| NA | DP2832 | related to thioredoxin/glutaredoxin | SubName: Full=Related to thioredoxin/glutaredoxin; | chromosome | CDS | 3192994 | 258 | + | 0.422481 |
| NA | DP0562 | related to sulfate ABC transporter, permease protein | SubName: Full=Related to sulfate ABC transporter, permease protein; | chromosome | CDS | 615080 | 798 | + | 0.482456 |
| NA | DP0308 | related to serine proteinase | SubName: Full=Related to serine proteinase; | chromosome | CDS | 337233 | 1155 | + | 0.462338 |
| NA | DP1671 | probable protease HtpX | RecName: Full=Protease HtpX homolog; EC=3.4.24.-; | chromosome | CDS | 1868934 | 864 | + | 0.534722 |
| NA | DP2430 | hypothetical membrane protein | SubName: Full=Hypothetical membrane protein; | chromosome | CDS | 2777196 | 588 | - | 0.411565 |
| NA | DP1537 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1718806 | 576 | - | 0.510417 |
| NA | DP0532 | probable glutathione peroxidase | RecName: Full=Glutathione peroxidase; | chromosome | CDS | 581392 | 549 | + | 0.491803 |
| NA | DP1014 | related to hydrogenase isoenzymes formation protein | SubName: Full=Related to hydrogenase isoenzymes formation protein; | chromosome | CDS | 1149403 | 1107 | + | 0.490515 |
| NA | DP2537 | probable ATP-dependent Clp protease, ATPase subunit (ClpX) | RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX; | chromosome | CDS | 2892226 | 1260 | - | 0.469048 |
| NA | DP1308 | related to CAAX prenyl protease | SubName: Full=Related to CAAX prenyl protease; | chromosome | CDS | 1464855 | 1239 | - | 0.47619 |
| NA | DP1167 | probable outer membrane protein MIP (macrophage infectivity potentiator) | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; | chromosome | CDS | 1301562 | 738 | + | 0.460705 |
| NA | DP0946 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1055670 | 231 | + | 0.415584 |
| NA | DP2921 | probable ATP-dependent protease La | SubName: Full=Probable ATP-dependent protease La; | chromosome | CDS | 3302827 | 1470 | - | 0.470068 |
| NA | DP0809 | related to thioredoxin reductase | RecName: Full=Thioredoxin reductase; EC=1.8.1.9; | chromosome | CDS | 912546 | 936 | - | 0.5 |
| NA | DP1910 | probable heat shock protein ClpB | SubName: Full=Probable heat shock protein ClpB; | chromosome | CDS | 2151128 | 2607 | + | 0.48715 |
| NA | DP0191 | probable chaperonin GroES | RecName: Full=10 kDa chaperonin; AltName: Full=GroES protein; AltName: Full=Protein Cpn10; | chromosome | CDS | 207028 | 288 | - | 0.46875 |
| NA | DP2539 | related to trigger factor | RecName: Full=Trigger factor; Short=TF; EC=5.2.1.8; AltName: Full=PPIase; | chromosome | CDS | 2894209 | 1341 | - | 0.441462 |
| NA | DP2504 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2853931 | 462 | - | 0.469697 |
| NA | DP2937 | related to heat shock protein DnaJ | SubName: Full=Related to heat shock protein DnaJ; | chromosome | CDS | 3323726 | 822 | + | 0.459854 |
| NA | DP1091 | probable lambda CII stability-governing protein (HflC) | RecName: Full=Protein HflC; | chromosome | CDS | 1231555 | 939 | - | 0.464324 |
| NA | DP1870 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2104148 | 462 | - | 0.426407 |
| NA | DP3017 | related to type IV prepilin leader peptidase | RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; | chromosome | CDS | 3415292 | 792 | + | 0.515152 |
| NA | DP1607 | related to 27kDa outer membrane protein | SubName: Full=Related to 27kDa outer membrane protein; | chromosome | CDS | 1790288 | 882 | - | 0.480726 |
| NA | DP1643 | probable chaperone DnaK | RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70; | chromosome | CDS | 1835430 | 1902 | + | 0.47266 |
| NA | DP1540 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1720116 | 1341 | - | 0.463087 |
| NA | DP1681 | probable cytochrome c biogenesis protein (CcsA) | SubName: Full=Probable cytochrome c biogenesis protein (CcsA); | chromosome | CDS | 1882295 | 843 | - | 0.46382 |
| NA | DP2660 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3024549 | 450 | + | 0.415556 |
| NA | DP1617 | related to collagenase (proteinase) | SubName: Full=Related to collagenase (Proteinase); | chromosome | CDS | 1800881 | 2349 | + | 0.481481 |
| NA | DP2155 | probable ferredoxin-thioredoxin reductase | SubName: Full=Probable ferredoxin-thioredoxin reductase; | chromosome | CDS | 2471300 | 591 | + | 0.404399 |
| NA | DP2173 | probable probable O-sialoglycoprotein endopeptidase | RecName: Full=tRNA N6-adenosine threonylcarbamoyltransferase; EC=2.6.99.4; AltName: Full=N6-L-threonylcarbamoyladenine synthase; Short=t(6)A synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaD; | chromosome | CDS | 2494009 | 1035 | + | 0.472464 |
| NA | DP1475 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1647627 | 474 | + | 0.527426 |
| NA | DP1482 | probable chaperone protein DnaJ | RecName: Full=Chaperone protein DnaJ; | chromosome | CDS | 1653556 | 1122 | + | 0.475045 |
| NA | DP0886 | probable ATP-dependent Clp protease, ATP-binding subunit ClpA | SubName: Full=Probable ATP-dependent Clp protease, ATP-binding subunit ClpA; | chromosome | CDS | 995432 | 2253 | - | 0.507767 |
| NA | DP0130 | probable ATP-dependent protease La | RecName: Full=Lon protease 1; EC=3.4.21.53; AltName: Full=ATP-dependent protease La 1; | chromosome | CDS | 144446 | 2427 | - | 0.454058 |
| NA | DP1351 | related to molybdenum ABC transporter, permease protein | SubName: Full=Related to molybdenum ABC transporter, permease protein; | chromosome | CDS | 1510008 | 786 | + | 0.506361 |
| NA | DP2696 | probable ATP-dependent protease HslV, protease subunit | RecName: Full=ATP-dependent protease subunit HslV; EC=3.4.25.2; | chromosome | CDS | 3057986 | 597 | - | 0.443886 |
| hypB | DP0583 | probable hydrogenase accessory protein HypB | SubName: Full=Probable hydrogenase accessory protein HypB; | chromosome | CDS | 640036 | 765 | + | 0.535948 |
| hypC | DP0578 | probable hydrogenase accessory protein HypC | SubName: Full=Probable hydrogenase accessory protein HypC; | chromosome | CDS | 636672 | 273 | + | 0.487179 |
| hypD | DP0579 | probable hydrogenase accessory protein HypD | SubName: Full=Probable hydrogenase accessory protein HypD; | chromosome | CDS | 636941 | 1089 | + | 0.533517 |
| hypE | DP0580 | probable hydrogenase accessory protein HypE | SubName: Full=Probable hydrogenase accessory protein HypE; | chromosome | CDS | 637995 | 1083 | + | 0.526316 |
| hypF | DP0577 | probable hydrogenase accessory protein HypF | SubName: Full=Probable hydrogenase accessory protein HypF; | chromosome | CDS | 634367 | 2349 | + | 0.527884 |
| pflA | DP0065 | related to pyruvate formate-lyase activating enzyme | SubName: Full=Related to pyruvate formate-lyase activating enzyme; | chromosome | CDS | 71795 | 621 | + | 0.504026 |
| pflC | DP1824 | related to pyruvate formate-lyase activating enzyme | SubName: Full=Related to pyruvate formate-lyase activating enzyme; | chromosome | CDS | 2063068 | 933 | + | 0.484459 |
| pflC | DP3026 | related to pyruvate formate-lyase activating enzyme | SubName: Full=Related to pyruvate formate-lyase activating enzyme; | chromosome | CDS | 3424979 | 1023 | - | 0.434018 |
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