Gene list
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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Thermobifida fusca YX, YX
Number of genes found: 96
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| Thermobifida fusca YX, YX | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tfu_1831 | putative heat shock protein, hsp90-family | SubName: Full=Putative heat shock protein, hsp90-family; | chromosome | CDS | 2134950 | 1941 | - | 0.681607 |
| NA | Tfu_2895 | peptidase M41, FtsH | RecName: Full=ATP-dependent zinc metalloprotease FtsH; EC=3.4.24.-; Flags: Precursor; | chromosome | CDS | 3409115 | 2049 | - | 0.652513 |
| NA | Tfu_2876 | ATPase | SubName: Full=ATPase; | chromosome | CDS | 3385786 | 2493 | - | 0.667068 |
| NA | Tfu_1809 | vesicle-fusing ATPase | RecName: Full=Proteasome-associated ATPase; AltName: Full=AAA ATPase forming ring-shaped complexes; Short=ARC; AltName: Full=Proteasomal ATPase; | chromosome | CDS | 2108678 | 1755 | - | 0.62906 |
| NA | Tfu_2333 | regulatory protein, MerR | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 2747357 | 762 | - | 0.666667 |
| NA | Tfu_0237 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 263655 | 3090 | - | 0.728803 |
| NA | Tfu_2436 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2861146 | 798 | - | 0.660401 |
| NA | Tfu_0697 | putative ATP/GTP binding protein | SubName: Full=Putative ATP/GTP binding protein; | chromosome | CDS | 805651 | 426 | + | 0.678404 |
| NA | Tfu_2819 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3311495 | 1095 | + | 0.671233 |
| NA | Tfu_2147 | band 7 protein | SubName: Full=Band 7 protein; | chromosome | CDS | 2515354 | 1353 | - | 0.678492 |
| NA | Tfu_1437 | band 7 protein | SubName: Full=Band 7 protein; | chromosome | CDS | 1663574 | 942 | + | 0.661359 |
| NA | Tfu_0385 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 427978 | 1917 | - | 0.695879 |
| NA | Tfu_2392 | putative thioredoxin | SubName: Full=Putative thioredoxin; | chromosome | CDS | 2814832 | 930 | - | 0.669892 |
| NA | Tfu_0451 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 509558 | 1998 | + | 0.70971 |
| NA | Tfu_2602 | peptidase M22, glycoprotease | RecName: Full=tRNA N6-adenosine threonylcarbamoyltransferase; EC=2.6.99.4; AltName: Full=N6-L-threonylcarbamoyladenine synthase; Short=t(6)A synthase; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD; AltName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein TsaD; | chromosome | CDS | 3073543 | 1044 | - | 0.717433 |
| NA | Tfu_2711 | DNA repair protein RadA | RecName: Full=DNA repair protein radA; | chromosome | CDS | 3185153 | 1365 | + | 0.716484 |
| NA | Tfu_1984 | FeS assembly ATPase SufC | SubName: Full=Iron-regulated ABC transporter ATPase subunit SufC; | chromosome | CDS | 2317608 | 762 | - | 0.653543 |
| NA | Tfu_2702 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 3176497 | 1584 | - | 0.686869 |
| NA | Tfu_1214 | similar to Molecular chaperone (small heat shock protein) | SubName: Full=Similar to Molecular chaperone (Small heat shock protein); | chromosome | CDS | 1416342 | 783 | - | 0.662835 |
| NA | Tfu_2227 | band 7 protein | SubName: Full=SPFH domain, Band 7 family protein; Flags: Precursor; | chromosome | CDS | 2623447 | 1080 | + | 0.657407 |
| NA | Tfu_1964 | putative thiol-specific antioxidant protein | SubName: Full=Putative thiol-specific antioxidant protein; | chromosome | CDS | 2297103 | 471 | - | 0.653928 |
| NA | Tfu_1089 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1270356 | 807 | + | 0.753408 |
| NA | Tfu_2834 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3330288 | 4959 | + | 0.689252 |
| NA | Tfu_0404 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 455040 | 324 | + | 0.645062 |
| NA | Tfu_0529 | Glutaredoxin-like protein GlrX | SubName: Full=Glutaredoxin-like protein GlrX; | chromosome | CDS | 600309 | 261 | - | 0.616858 |
| NA | Tfu_2735 | putative redoxin | SubName: Full=Putative redoxin; | chromosome | CDS | 3215246 | 288 | - | 0.625 |
| NA | Tfu_0353 | trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain | SubName: Full=Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; | chromosome | CDS | 396909 | 1752 | - | 0.714041 |
| NA | Tfu_0196 | Heat shock protein Hsp70 | RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70; | chromosome | CDS | 221550 | 1842 | + | 0.661238 |
| NA | Tfu_2604 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3075038 | 696 | - | 0.731322 |
| NA | Tfu_2820 | peptidylprolyl isomerase | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; Flags: Precursor; | chromosome | CDS | 3312774 | 621 | + | 0.645733 |
| NA | Tfu_0200 | ATPase | SubName: Full=ATPase; | chromosome | CDS | 226000 | 2604 | + | 0.682028 |
| NA | Tfu_1338 | ATPase | SubName: Full=ATPase; | chromosome | CDS | 1547778 | 3003 | - | 0.698968 |
| NA | Tfu_0986 | glutamate-ammonia-ligase adenylyltransferase | RecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthase adenylyltransferase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; | chromosome | CDS | 1155995 | 3123 | - | 0.720781 |
| NA | Tfu_0197 | similar to Molecular chaperone GrpE (heat shock protein) | RecName: Full=Protein GrpE; AltName: Full=HSP-70 cofactor; | chromosome | CDS | 223425 | 795 | + | 0.672956 |
| NA | Tfu_2678 | methionine sulfoxide reductase A | RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; EC=1.8.4.11; AltName: Full=Peptide-methionine (S)-S-oxide reductase; | chromosome | CDS | 3151826 | 669 | - | 0.669656 |
| NA | Tfu_0635 | ABC transporter, ATP-binding protein | SubName: Full=ABC transporter, ATP-binding protein; Flags: Precursor; | chromosome | CDS | 737756 | 1782 | - | 0.734568 |
| NA | Tfu_1808 | putative methyltransferase | SubName: Full=Putative methyltransferase; | chromosome | CDS | 2106719 | 1131 | + | 0.647215 |
| NA | Tfu_1008 | protease HtpX-like protein (heat shock protein) | RecName: Full=Protease HtpX homolog; EC=3.4.24.-; Flags: Precursor; | chromosome | CDS | 1183238 | 921 | + | 0.700326 |
| NA | Tfu_0670 | Mg chelatase-related protein | SubName: Full=Mg chelatase-related protein; | chromosome | CDS | 774267 | 1545 | + | 0.717152 |
| NA | Tfu_0618 | putative membrane protein | SubName: Full=Putative membrane protein; Flags: Precursor; | chromosome | CDS | 717936 | 774 | - | 0.682171 |
| NA | Tfu_2226 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 2622915 | 441 | + | 0.673469 |
| NA | Tfu_2258 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2659807 | 405 | + | 0.671605 |
| NA | Tfu_2193 | endopeptidase Clp | RecName: Full=ATP-dependent Clp protease proteolytic subunit 1; EC=3.4.21.92; AltName: Full=Endopeptidase Clp 1; | chromosome | CDS | 2576348 | 669 | - | 0.627803 |
| NA | Tfu_2770 | thioredoxin | RecName: Full=Thioredoxin; | chromosome | CDS | 3250467 | 378 | + | 0.637566 |
| NA | Tfu_1168 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1359007 | 1014 | + | 0.667653 |
| NA | Tfu_2917 | integral membrane protein | SubName: Full=Integral membrane protein; | chromosome | CDS | 3432158 | 945 | + | 0.691005 |
| NA | Tfu_0198 | Heat shock protein DnaJ | RecName: Full=Chaperone protein DnaJ; | chromosome | CDS | 224240 | 1215 | + | 0.688889 |
| NA | Tfu_2194 | endopeptidase Clp | RecName: Full=ATP-dependent Clp protease proteolytic subunit 2; EC=3.4.21.92; AltName: Full=Endopeptidase Clp 2; | chromosome | CDS | 2577070 | 612 | - | 0.647059 |
| NA | Tfu_1995 | putative integral membrane transport protein | SubName: Full=Putative integral membrane transport protein; | chromosome | CDS | 2328338 | 1056 | + | 0.696023 |
| NA | Tfu_2704 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 3178892 | 618 | - | 0.676375 |
| NA | Tfu_1987 | FeS assembly protein SufB | SubName: Full=Iron-regulated ABC transporter membrane component SufB; | chromosome | CDS | 2319863 | 1413 | - | 0.646851 |
| NA | Tfu_1180 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1375610 | 936 | - | 0.715812 |
| NA | Tfu_1014 | putative aminotransferase | SubName: Full=Putative aminotransferase; | chromosome | CDS | 1188660 | 237 | - | 0.64557 |
| NA | Tfu_1528 | heat shock protein, class I | SubName: Full=Heat shock protein Hsp20; | chromosome | CDS | 1758623 | 462 | + | 0.62987 |
| NA | Tfu_3108 | thioredoxin reductase | RecName: Full=Thioredoxin reductase; EC=1.8.1.9; | chromosome | CDS | 3634581 | 933 | + | 0.636656 |
| NA | Tfu_2285 | similar to FKBP-type peptidyl-prolyl cis-trans isomerases 1 | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; Flags: Precursor; | chromosome | CDS | 2688230 | 930 | - | 0.651613 |
| NA | Tfu_2192 | ClpX, ATPase regulatory subunit | RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX; | chromosome | CDS | 2574526 | 1344 | - | 0.618304 |
| NA | Tfu_2673 | putative peptidase | SubName: Full=HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; | chromosome | CDS | 3145749 | 987 | - | 0.683891 |
| NA | Tfu_1645 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1914735 | 834 | - | 0.658273 |
| NA | Tfu_1773 | similar to FKBP-type peptidyl-prolyl cis-trans isomerases 1 | RecName: Full=Peptidyl-prolyl cis-trans isomerase; Flags: Precursor; | chromosome | CDS | 2071567 | 1137 | - | 0.676341 |
| NA | Tfu_0636 | ABC transporter, ATP-binding protein | SubName: Full=ABC transporter, ATP-binding protein; Flags: Precursor; | chromosome | CDS | 739534 | 1815 | - | 0.722865 |
| NA | Tfu_1522 | similar to Cytochrome c biogenesis protein | SubName: Full=Similar to Cytochrome c biogenesis protein; Flags: Precursor; | chromosome | CDS | 1753950 | 858 | + | 0.644522 |
| NA | Tfu_0839 | Heat shock protein DnaJ | RecName: Full=Chaperone protein DnaJ; | chromosome | CDS | 994380 | 1140 | + | 0.69386 |
| NA | Tfu_0899 | similar to V8-like Glu-specific endopeptidase | SubName: Full=Similar to V8-like Glu-specific endopeptidase; | chromosome | CDS | 1058836 | 2034 | - | 0.716323 |
| NA | Tfu_3003 | putative O-methyltransferase | SubName: Full=Putative O-methyltransferase; | chromosome | CDS | 3517735 | 1077 | - | 0.69545 |
| NA | Tfu_0228 | chaperonin Cpn60/TCP-1 | RecName: Full=60 kDa chaperonin 1; AltName: Full=GroEL protein 1; AltName: Full=Protein Cpn60 1; | chromosome | CDS | 256923 | 1626 | + | 0.662977 |
| NA | Tfu_1789 | putative 20S proteasome alpha-subunit | RecName: Full=Proteasome subunit alpha; EC=3.4.25.1; AltName: Full=20S proteasome alpha subunit; AltName: Full=Proteasome core protein PrcA; | chromosome | CDS | 2090576 | 750 | - | 0.654667 |
| NA | Tfu_1933 | proteinase inhibitor I4, serpin | SubName: Full=Proteinase inhibitor I4, serpin; | chromosome | CDS | 2261547 | 1101 | + | 0.71753 |
| NA | Tfu_0221 | similar to Subtilisin-like serine proteases | SubName: Full=Similar to Subtilisin-like serine proteases; Flags: Precursor; | chromosome | CDS | 249369 | 1251 | - | 0.71303 |
| NA | Tfu_2759 | similar to Glutathione peroxidase | RecName: Full=Glutathione peroxidase; | chromosome | CDS | 3236321 | 633 | - | 0.649289 |
| NA | Tfu_2148 | band 7 protein | SubName: Full=Band 7 protein; | chromosome | CDS | 2516706 | 1617 | - | 0.672851 |
| NA | Tfu_0071 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 90403 | 561 | - | 0.673797 |
| NA | Tfu_2195 | trigger factor | RecName: Full=Trigger factor; Short=TF; EC=5.2.1.8; AltName: Full=PPIase; | chromosome | CDS | 2577887 | 1392 | - | 0.666667 |
| NA | Tfu_0924 | putative ADP-ribosylglycohydrolase | SubName: Full=Putative ADP-ribosylglycohydrolase; | chromosome | CDS | 1086332 | 1140 | + | 0.737719 |
| NA | Tfu_2599 | 10 kD chaperone | RecName: Full=10 kDa chaperonin; AltName: Full=GroES protein; AltName: Full=Protein Cpn10; | chromosome | CDS | 3069220 | 312 | - | 0.657051 |
| NA | Tfu_2144 | ATPase | SubName: Full=ATPase; Flags: Precursor; | chromosome | CDS | 2511143 | 2409 | - | 0.701536 |
| NA | Tfu_0579 | peptidase S49, protease IV:Peptidase S49, SppA | SubName: Full=Signal peptide peptidase A. Serine peptidase. MEROPS family S49; | chromosome | CDS | 659783 | 1710 | - | 0.690643 |
| NA | Tfu_2476 | SmpB protein | RecName: Full=SsrA-binding protein; | chromosome | CDS | 2914765 | 483 | - | 0.652174 |
| NA | Tfu_0172 | thioredoxin | SubName: Full=Thioredoxin; | chromosome | CDS | 196770 | 465 | + | 0.625806 |
| NA | Tfu_2001 | protoheme IX farnesyltransferase | RecName: Full=Protoheme IX farnesyltransferase; EC=2.5.1.-; AltName: Full=Heme B farnesyltransferase; AltName: Full=Heme O synthase; | chromosome | CDS | 2335610 | 978 | - | 0.666667 |
| NA | Tfu_0507 | trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain | SubName: Full=Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; | chromosome | CDS | 573537 | 1470 | + | 0.704082 |
| NA | Tfu_1576 | Conserved hypothetical protein 374 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1814498 | 2430 | - | 0.680658 |
| NA | Tfu_2703 | putative cytochrome C biogenesis membrane protein | SubName: Full=Putative cytochrome C biogenesis membrane protein; Flags: Precursor; | chromosome | CDS | 3178083 | 813 | - | 0.688807 |
| NA | Tfu_1893 | methionine sulfoxide reductase B | SubName: Full=Methionine sulfoxide reductase B; EC=1.8.4.11; | chromosome | CDS | 2218842 | 423 | + | 0.617021 |
| NA | Tfu_1986 | FeS assembly protein SufD | SubName: Full=Iron-regulated ABC transporter permease protein SufD; | chromosome | CDS | 2318706 | 1155 | - | 0.678788 |
| NA | Tfu_2701 | CcsB | SubName: Full=CcsB; | chromosome | CDS | 3175504 | 990 | - | 0.665657 |
| NA | Tfu_2995 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3505917 | 999 | - | 0.666667 |
| NA | Tfu_1571 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1808872 | 609 | + | 0.642036 |
| NA | Tfu_0120 | putative serine protease | SubName: Full=Putative serine protease; | chromosome | CDS | 143148 | 1179 | + | 0.660729 |
| NA | Tfu_2598 | chaperonin Cpn60/TCP-1 | RecName: Full=60 kDa chaperonin 2; AltName: Full=GroEL protein 2; AltName: Full=Protein Cpn60 2; | chromosome | CDS | 3067464 | 1614 | - | 0.684015 |
| NA | Tfu_3069 | peptidylprolyl isomerase | RecName: Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; | chromosome | CDS | 3585883 | 525 | - | 0.628571 |
| NA | Tfu_2360 | bacterioferritin comigratory protein | SubName: Full=Bacterioferritin comigratory protein; | chromosome | CDS | 2776262 | 483 | + | 0.619048 |
| NA | Tfu_1523 | similar to Protein-disulfide isomerase | SubName: Full=Similar to Protein-disulfide isomerase; | chromosome | CDS | 1754997 | 840 | + | 0.677381 |
| NA | Tfu_2172 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2546774 | 1041 | + | 0.684918 |
| NA | Tfu_3109 | thioredoxin | RecName: Full=Thioredoxin; | chromosome | CDS | 3635579 | 324 | + | 0.608025 |
| NA | Tfu_1790 | Proteasome endopeptidase complex | RecName: Full=Proteasome subunit beta; EC=3.4.25.1; AltName: Full=20S proteasome beta subunit; AltName: Full=Proteasome core protein PrcB; Flags: Precursor; | chromosome | CDS | 2091369 | 849 | - | 0.647821 |
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