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2024-05-05 15:15:20

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978

Number of genes found: 167

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Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPPH_4887 oxidoreductase, 2OG-Fe(II) oxygenase familychromosome CDS5557154 735 - 0.572789
NA PSPPH_0604 glutathione S-transferase family proteinchromosome CDS714330 843 - 0.597865
NA PSPPH_4499 urease accessory protein, putativechromosome CDS5134626 573 + 0.640489
NA PSPPH_0639 DnaJ-like protein DjlAchromosome CDS756194 768 + 0.628906
NA PSPPH_3414 flagellar basal-body P-ring formation protein FlgA, putativechromosome CDS3946917 759 + 0.577075
NA PSPPH_5073 unnamed protein productchromosome CDS5755796 351 + 0.356125
NA PSPPH_B0054 putative TnpA repressor proteinsmall plasmid CDS46967 336 - 0.571429
NA PSPPH_0182 transposition helper protein, truncatedchromosome CDS220514 636 - 0.517296
NA PSPPH_3504 alginate biosynthesis transcriptional activatorchromosome CDS4043310 327 + 0.522936
NA PSPPH_0519 carbamoyltransferase family proteinchromosome CDS609740 1758 + 0.594425
NA PSPPH_2094 conserved hypothetical proteinchromosome CDS2453655 243 + 0.588477
NA PSPPH_4511 thioredoxin, putativechromosome CDS5143482 873 + 0.581901
NA PSPPH_2855 hypothetical proteinchromosome CDS3298619 1140 - 0.604386
NA PSPPH_1702 peptidyl-prolyl cis-trans isomerase D, putativechromosome CDS1967468 1884 + 0.566348
NA PSPPH_1949 heat shock protein, Hsp20 familychromosome CDS2294869 444 + 0.556306
NA PSPPH_3677 thioredoxin domain protein, DsbA familychromosome CDS4226271 633 - 0.64139
NA PSPPH_0180 unnamed protein productchromosome CDS214090 2211 + 0.54455
NA PSPPH_2054 uncharacterized protein conserved in archaeachromosome CDS2407278 552 - 0.539855
NA PSPPH_A0106 hypothetical conserved protein, putativelarge plasmid CDS91331 579 - 0.509499
NA PSPPH_1058 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS1250729 486 + 0.592593
NA PSPPH_4761 glutathione S-transferase family proteinchromosome CDS5406212 615 - 0.595122
NA PSPPH_0768 thioredoxin domain protein, DsbA familychromosome CDS899429 798 - 0.56015
NA PSPPH_4135 periplasmic serine protease DegS, putativechromosome CDS4721381 1161 + 0.598622
NA PSPPH_0677 OsmC/Ohr family proteinchromosome CDS792665 609 + 0.555008
NA PSPPH_3862 Inactive homolog of metal-dependent proteaseschromosome CDS4416928 726 - 0.626722
NA PSPPH_0272 cytochrome c oxidase assembly protein, CtaG/Cox11 familychromosome CDS313946 489 - 0.568507
NA PSPPH_4482 curved-DNA-binding proteinchromosome CDS5118196 960 - 0.608333
NA PSPPH_3722 thioredoxin, putativechromosome CDS4271159 468 - 0.594017
NA PSPPH_0827 trypsin domain proteinchromosome CDS990376 1140 + 0.617544
NA PSPPH_1035 lipoprotein, putativechromosome CDS1223313 819 + 0.582418
NA PSPPH_2819 Rhs family proteinchromosome CDS3264780 1233 - 0.485807
NA PSPPH_3892 glutaredoxin-related proteinchromosome CDS4449894 327 - 0.529052
NA PSPPH_4288 ATP-dependent protease, putativechromosome CDS4893567 2274 - 0.598065
NA PSPPH_2358 papain cysteine protease family proteinchromosome CDS2734365 768 - 0.546875
NA PSPPH_3764 radical SAM domain proteinchromosome CDS4315440 648 - 0.564815
NA PSPPH_2027 CHAD domain superfamilychromosome CDS2380995 762 + 0.61811
NA PSPPH_1567 aspartyl-asparaginyl beta-hydroxylasechromosome CDS1818544 939 + 0.58147
NA PSPPH_4098 glutathione S-transferase domain proteinchromosome CDS4680993 627 - 0.594896
NA PSPPH_1802 glutathione S-transferase family proteinchromosome CDS2107569 603 + 0.54063
NA PSPPH_1787 SirA proteinchromosome CDS2093685 255 + 0.560784
NA PSPPH_5066 ADP-ribosylglycohydrolase family proteinchromosome CDS5742487 828 - 0.5157
NA PSPPH_5164 SPFH domainchromosome CDS5855939 1071 - 0.646125
NA PSPPH_1249 glutathione S-transferasechromosome CDS1456450 627 + 0.564593
NA PSPPH_4418 type IV leader peptidase familychromosome CDS5043760 474 + 0.57384
NA PSPPH_0361 hypothetical proteinchromosome CDS415068 954 + 0.62369
NA PSPPH_3095 Potential bifunctional amino-acid-tRNA--protein transferase [Includes:Leucyl/phenylalanyl-tRNA--protein transferase (L/F-transferase) (Leucyltransferachromosome CDS3592348 708 + 0.536723
NA PSPPH_4282 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS4890061 660 - 0.613636
NA PSPPH_2549 xanthine dehydrogenase accessory factor, putativechromosome CDS2941321 969 + 0.629515
NA PSPPH_2826 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS3272391 420 + 0.561905
NA PSPPH_1972 conserved hypothetical proteinchromosome CDS2319633 387 + 0.547804
NA PSPPH_0185 magnesium chelatase, subunit D/I familychromosome CDS222660 621 + 0.640902
NA PSPPH_5018 possible ribosomal protein S6 modification proteinchromosome CDS5685316 477 - 0.582809
NA PSPPH_0103 conserved hypothetical proteinchromosome CDS116302 390 + 0.482051
NA PSPPH_0108 lipoprotein, putativechromosome CDS126146 336 + 0.547619
NA PSPPH_4944 DnaJ domain proteinchromosome CDS5617413 1197 - 0.60401
NA PSPPH_2623 yhgI proteinchromosome CDS3027419 594 + 0.543771
NA PSPPH_1535 AhpC/Tsa family proteinchromosome CDS1789925 474 - 0.565401
NA PSPPH_4931 conserved hypothetical proteinchromosome CDS5605202 273 + 0.567766
NA PSPPH_4484 heat shock protein, Hsp70 familychromosome CDS5119467 1266 + 0.601106
NA PSPPH_0723 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS847403 477 + 0.551363
NA PSPPH_1009 conserved hypothetical proteinchromosome CDS1200431 423 - 0.55792
NA PSPPH_1139 conserved hypothetical proteinchromosome CDS1337543 633 + 0.584518
NA PSPPH_3607 selT/selW/selH selenoprotein domain proteinchromosome CDS4153519 303 - 0.617162
NA PSPPH_0063 DsbB family proteinchromosome CDS64176 588 - 0.557823
NA PSPPH_3690 glutathione peroxidase family proteinchromosome CDS4238565 552 - 0.572464
NA PSPPH_3721 lipoprotein, putativechromosome CDS4269913 408 + 0.615196
NA PSPPH_1804 Glutaredoxinchromosome CDS2108610 378 - 0.57672
NA PSPPH_1582 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS1836211 771 + 0.559014
NA PSPPH_0686 conserved hypothetical proteinchromosome CDS799565 1095 - 0.581735
NA PSPPH_1523 serine proteasechromosome CDS1772229 1611 + 0.62756
NA PSPPH_3629 glutathione peroxidase family proteinchromosome CDS4173765 570 - 0.575439
NA PSPPH_2616 peptidase, U7 familychromosome CDS3014514 1023 + 0.580645
NA PSPPH_4760 uncharacterized protein conserved in archaeachromosome CDS5405597 504 + 0.585317
NA PSPPH_1622 glutathione S-transferase family proteinchromosome CDS1884293 624 + 0.613782
NA PSPPH_0060 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS62767 681 + 0.600587
NA PSPPH_4906 antioxidant, AhpC/Tsa familychromosome CDS5579405 639 - 0.541471
NA PSPPH_4491 conserved hypothetical proteinchromosome CDS5124936 975 + 0.53641
NA PSPPH_0178 Mg-chelatase subunits D/I family, ComM subfamily proteinchromosome CDS211856 864 + 0.65625
NA PSPPH_5165 SPFH domainchromosome CDS5857006 1038 - 0.641618
NA PSPPH_1773 xanthine dehydrogenase accessory factor XdhC, putativechromosome CDS2071300 840 - 0.616667
NA PSPPH_1739 glutathione S-transferase family proteinchromosome CDS2018214 585 + 0.596581
NA PSPPH_3009 peptidase, U32 familychromosome CDS3492422 2103 + 0.607228
NA PSPPH_3488 glutathione S-transferase family proteinchromosome CDS4027517 741 - 0.574899
NA PSPPH_4871 conserved hypothetical proteinchromosome CDS5539520 450 - 0.544444
NA PSPPH_2172 conserved hypothetical proteinchromosome CDS2526895 645 + 0.604651
NA PSPPH_1059 glutathione peroxidase family proteinchromosome CDS1251347 489 + 0.550102
NA PSPPH_4005 DnaJ domain proteinchromosome CDS4575203 1635 + 0.573089
NA PSPPH_0179 ATPase, AAA familychromosome CDS212966 1128 + 0.538121
NA PSPPH_1533 SirA domain proteinchromosome CDS1788513 252 + 0.583333
NA PSPPH_5166 SPFH domainchromosome CDS5858055 1947 - 0.644068
NA PSPPH_4728 ABC transporter, permease proteinchromosome CDS5365773 876 - 0.624429
aat PSPPH_3094 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS3591610 690 + 0.586957
ahpC PSPPH_2265 alkyl hydroperoxide reductase, C subunitchromosome CDS2627405 564 + 0.56383
ahpF PSPPH_2266 alkyl hydroperoxide reductase, F subunitchromosome CDS2628093 1563 + 0.586692
ccmA PSPPH_3314 heme exporter protein CcmAchromosome CDS3835994 690 - 0.634783
ccmB PSPPH_3313 heme exporter protein CcmBchromosome CDS3835326 672 - 0.626488
ccmC PSPPH_3312 heme exporter protein CcmCchromosome CDS3834468 789 - 0.619772
ccmE PSPPH_3310 cytochrome c-type biogenesis protein CcmEchromosome CDS3833831 468 - 0.606838
ccmF PSPPH_3309 cytochrome c-type biogenesis protein CcmFchromosome CDS3831854 1974 - 0.617528
ccoN PSPPH_3337 cytochrome c oxidase, cbb3-type, subunit Ichromosome CDS3866057 1443 + 0.592516
ccoQ PSPPH_3339 cytochrome c oxidase, cbb3-type, subunit IVchromosome CDS3868113 192 + 0.609375
clpA PSPPH_3097 ATP-dependent clp protease, ATP-binding subunit ClpAchromosome CDS3593492 2274 - 0.574318
clpB1 PSPPH_0129 ATP-dependent Clp protease ATP-binding subunitchromosome CDS150906 2604 - 0.613287
clpB2 PSPPH_0742 clpB proteinchromosome CDS868016 2565 + 0.586745
clpP PSPPH_1698 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS1962205 642 + 0.566978
clpX PSPPH_1699 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS1962953 1284 + 0.568536
cycH PSPPH_3306 cytochrome c-type biogenesis protein CycHchromosome CDS3829676 1182 - 0.645516
cycL PSPPH_3307 cytochrome c-type biogenesis protein CycLchromosome CDS3830854 471 - 0.600849
cyoE PSPPH_1214 protoheme IX farnesyltransferasechromosome CDS1423438 888 + 0.550676
cysT PSPPH_0088 sulfate ABC transporter, permease protein CysTchromosome CDS96036 822 - 0.619221
dnaJ PSPPH_4205 dnaJ proteinchromosome CDS4793746 1143 - 0.60105
dnaK PSPPH_4206 dnaK proteinchromosome CDS4795215 1917 - 0.544079
dsbA PSPPH_0257 thiol:disulfide interchange protein DsbAchromosome CDS297977 645 - 0.579845
dsbB PSPPH_1209 disulfide oxidoreductasechromosome CDS1418534 510 + 0.586275
dsbC PSPPH_1359 thiol:disulfide interchange protein DsbCchromosome CDS1574787 741 + 0.587045
dsbD PSPPH_4441 thiol:disulfide interchange protein DsbDchromosome CDS5072934 1821 + 0.599671
dsbE PSPPH_3308 thiol:disulfide interchange protein DsbEchromosome CDS3831321 522 - 0.611111
flgJ PSPPH_3398 peptidoglycan hydrolase FlgJchromosome CDS3932639 1245 - 0.607229
fliJ PSPPH_3379 flagellar protein FliJchromosome CDS3906556 450 - 0.588889
fliS PSPPH_3389 flagellar protein FliSchromosome CDS3917310 399 - 0.576441
ftsH PSPPH_4198 ATP-dependent metalloprotease FtsHchromosome CDS4784486 1914 - 0.576802
gcp PSPPH_0622 O-sialoglycoprotein endopeptidasechromosome CDS737567 1026 + 0.614035
glnD PSPPH_3842 protein-P-II uridylyltransferasechromosome CDS4396833 2697 + 0.579162
glnE PSPPH_0509 glutamate-ammonia-ligase adenylyltransferasechromosome CDS593264 2958 + 0.619675
groEL PSPPH_4077 chaperonin, 60 kDachromosome CDS4659262 1644 - 0.566302
groES PSPPH_4078 chaperonin, 10 kDachromosome CDS4660955 294 - 0.561224
grpE PSPPH_4207 heat shock protein GrpEchromosome CDS4797242 564 - 0.574468
grxC PSPPH_4914 glutaredoxin 3chromosome CDS5586845 252 - 0.583333
hflC PSPPH_0568 HflC proteinchromosome CDS667274 870 + 0.577011
hflK PSPPH_0567 HflK proteinchromosome CDS666075 1200 + 0.591667
hopI1 PSPPH_4366 type III effector HopI1chromosome CDS4988661 1011 - 0.579624
hscA PSPPH_1313 Fe-S protein assembly chaperone HscAchromosome CDS1522853 1863 + 0.604938
hscB PSPPH_1312 co-chaperone Hsc20chromosome CDS1522254 555 + 0.567568
hscC PSPPH_4004 chaperone protein HscCchromosome CDS4573503 1695 + 0.587611
hslO PSPPH_5021 chaperonin, 33 kDachromosome CDS5687341 903 + 0.611296
hslU PSPPH_0381 heat shock protein HslVU, ATPase subunit HslUchromosome CDS434160 1338 - 0.576233
hslV PSPPH_0382 heat shock protein HslVchromosome CDS435564 531 - 0.610169
htpG PSPPH_1987 heat shock protein HtpGchromosome CDS2335774 1908 + 0.572851
htpX PSPPH_3632 heat shock protein HtpXchromosome CDS4176466 888 + 0.581081
lon1 PSPPH_1700 ATP-dependent protease Lachromosome CDS1964447 2397 + 0.559449
lon2 PSPPH_3941 ATP-dependent protease Lachromosome CDS4503116 2418 + 0.586849
maiA PSPPH_3251 maleylacetoacetate isomerasechromosome CDS3768871 636 - 0.591195
msrA PSPPH_4802 peptide methionine sulfoxide reductasechromosome CDS5449515 648 + 0.578704
msrB PSPPH_3630 methionine-R-sulfoxide reductasechromosome CDS4174401 396 - 0.588384
mucD PSPPH_3952 S1C (protease Do) subfamily peptidase MucDchromosome CDS4514517 1440 - 0.582639
ohr PSPPH_3646 organic hydroperoxide resistance proteinchromosome CDS4190624 513 + 0.582846
osmC PSPPH_0042 hydroperoxide resistance protein OsmCchromosome CDS46051 432 + 0.543981
pcm PSPPH_3811 protein-L-isoaspartate O-methyltransferasechromosome CDS4363398 678 - 0.597345
pilD PSPPH_0818 type IV pilus prepilin peptidase PilDchromosome CDS978606 873 - 0.601375
ppiA PSPPH_1433 peptidyl-prolyl cis-trans isomerase Achromosome CDS1672681 609 - 0.546798
ppiB PSPPH_1677 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1939201 543 - 0.539595
ppiC1 PSPPH_2318 peptidyl-prolyl cis-trans isomerase Cchromosome CDS2693134 276 - 0.561594
ppiC2 PSPPH_2324 peptidyl-prolyl cis-trans isomerase Cchromosome CDS2700510 282 - 0.567376
pqqF PSPPH_4703 coenzyme PQQ biosynthesis protein PqqFchromosome CDS5338948 2322 + 0.600775
radA PSPPH_4332 DNA repair protein RadAchromosome CDS4952443 1368 - 0.619152
smpB PSPPH_4214 SsrA-binding proteinchromosome CDS4803170 483 + 0.563147
sppA PSPPH_1635 signal peptide peptidase SppA, 36K typechromosome CDS1899340 999 + 0.574575
sspA PSPPH_4124 stringent starvation protein Achromosome CDS4710362 618 - 0.559871
surA PSPPH_0635 peptidyl-prolyl cis-trans isomerase SurAchromosome CDS750219 1323 - 0.572184
tig PSPPH_1697 trigger factorchromosome CDS1960803 1311 + 0.556827
tpx PSPPH_2639 thiol peroxidasechromosome CDS3048162 501 + 0.546906
trxA PSPPH_0287 thioredoxinchromosome CDS330068 330 + 0.545455
trxB PSPPH_1067 thioredoxin-disulfide reductasechromosome CDS1259674 963 + 0.597092
ureD PSPPH_4474 urease accessory protein UreDchromosome CDS5111610 846 + 0.621749
ureE PSPPH_4496 urease accessory protein UreEchromosome CDS5132790 501 + 0.602794
ureF PSPPH_4497 urease accessory protein UreFchromosome CDS5133287 675 + 0.622222
ureG PSPPH_4498 urease accessory protein UreGchromosome CDS5133983 618 + 0.593851