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2024-05-05 14:14:34

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 145

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO3640 peptidase, family S49chromosome CDS3841970 846 - 0.661939
NA SPO0381 protease, putativechromosome CDS396139 591 - 0.717428
NA SPOA0173 conserved hypothetical proteinmegaplasmid CDS190045 528 + 0.609848
NA SPOA0086 conserved hypothetical proteinmegaplasmid CDS82940 1812 - 0.572848
NA SPO0070 glutaredoxinchromosome CDS72385 261 - 0.624521
NA SPO2314 periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamilychromosome CDS2450992 540 - 0.668519
NA SPO0563 glutathione S-transferase, putativechromosome CDS562898 630 + 0.657143
NA SPOA0362 27kDa outer membrane proteinmegaplasmid CDS404349 735 + 0.65034
NA SPO1883 conserved domain proteinchromosome CDS2006114 1554 + 0.700129
NA SPO3736 antioxidant, AhpC/Tsa familychromosome CDS3947999 486 - 0.644033
NA SPO0518 conserved hypothetical proteinchromosome CDS514528 717 + 0.640167
NA SPO3208 glutathione S-transferase family proteinchromosome CDS3418892 630 + 0.687302
NA SPO1343 glutathione S-transferase family proteinchromosome CDS1403684 642 - 0.654206
NA SPO1108 DnaJ-like protein DjlA, putativechromosome CDS1163091 681 + 0.657856
NA SPO3306 glutathione S-transferase, putativechromosome CDS3504822 615 + 0.665041
NA SPO2290 hypothetical proteinchromosome CDS2427851 1317 + 0.596811
NA SPO3494 glutathione S-transferase family proteinchromosome CDS3698893 702 - 0.618234
NA SPO0514 periplasmic serine protease, DO/DeqQ familychromosome CDS509955 1383 + 0.682574
NA SPO3446 thiol:disulfide interchange protein, DsbA familychromosome CDS3649932 669 - 0.626308
NA SPO3383 thiol-specific antioxidant proteinchromosome CDS3586245 654 + 0.622324
NA SPO0331 thiol:disulfide interchange protein, putativechromosome CDS342014 564 - 0.654255
NA SPO0894 conserved hypothetical proteinchromosome CDS950284 252 - 0.59127
NA SPO2483 conserved hypothetical proteinchromosome CDS2633490 1083 - 0.693444
NA SPO3096 conserved hypothetical proteinchromosome CDS3305583 1389 + 0.611231
NA SPO3484 heat shock protein, Hsp20 familychromosome CDS3689142 471 + 0.630573
NA SPO0745 hypothetical proteinchromosome CDS776692 2217 - 0.641407
NA SPO1868 glutaredoxin-related proteinchromosome CDS1987932 363 - 0.573003
NA SPOA0013 conserved hypothetical proteinmegaplasmid CDS11344 666 + 0.642643
NA SPO1257 glutathione S-transferase family proteinchromosome CDS1327302 612 - 0.679739
NA SPO2017 FeS assembly protein SufDchromosome CDS2144797 1281 - 0.647151
NA SPO2233 peptidyl-prolyl cis-trans isomerase, cyclophilin-typechromosome CDS2376704 546 - 0.657509
NA SPO3222 conserved hypothetical proteinchromosome CDS3427198 990 + 0.615152
NA SPO2163 conserved hypothetical proteinchromosome CDS2300559 630 - 0.652381
NA SPO2278 hypothetical proteinchromosome CDS2417264 1473 - 0.46368
NA SPO2902 glutathione S-transferase family proteinchromosome CDS3102951 630 - 0.626984
NA SPO2617 SPFH domain/band 7 family proteinchromosome CDS2773612 891 + 0.619529
NA SPO3752 radical SAM domain proteinchromosome CDS3963545 720 + 0.654167
NA SPO2917 glutathione S-transferase family proteinchromosome CDS3115377 642 + 0.624611
NA SPO2103 antioxidant, AhpC/Tsa familychromosome CDS2239931 549 + 0.599271
NA SPO0442 thioredoxinchromosome CDS455224 426 + 0.631455
NA SPO3854 O-sialoglycoprotein endopeptidase, putativechromosome CDS4069829 1098 + 0.693989
NA SPO3764 glutathione S-transferase family proteinchromosome CDS3973387 666 - 0.624625
NA SPO2850 DnaJ domain proteinchromosome CDS3047852 621 + 0.626409
NA SPO2145 conserved hypothetical proteinchromosome CDS2279655 1845 + 0.663957
NA SPO3742 glutathione peroxidase famly proteinchromosome CDS3953594 522 + 0.60728
NA SPO0895 heat shock protein, Hsp20 familychromosome CDS950677 414 + 0.620773
NA SPO1895 SirA family proteinchromosome CDS2020838 234 - 0.65812
NA SPO1625 periplasmic serine protease, DO/DeqQ familychromosome CDS1722127 1437 - 0.70007
NA SPO2517 peptidase, M48 familychromosome CDS2663950 687 + 0.681223
NA SPO3435 glutathione S-transferase family proteinchromosome CDS3638702 594 + 0.636364
NA SPO2228 AhpC/TSA family proteinchromosome CDS2372166 462 + 0.61039
NA SPO0475 conserved hypothetical proteinchromosome CDS480732 684 - 0.678363
NA SPO1881 cytochrome c biogenesis family proteinchromosome CDS2004759 453 + 0.673289
NA SPO3423 thioredoxinchromosome CDS3625670 915 - 0.660109
NA SPO2618 conserved domain proteinchromosome CDS2774502 273 + 0.630037
NA SPO0382 nifU domain proteinchromosome CDS396719 564 - 0.632979
NA SPO2640 XdhC/CoxI family proteinchromosome CDS2793253 981 - 0.697248
NA SPO2058 conserved hypothetical proteinchromosome CDS2190590 768 + 0.64974
NA SPO3486 conserved hypothetical proteinchromosome CDS3690143 699 - 0.643777
NA SPO2117 disulfide bond formation protein, DsbB familychromosome CDS2252440 462 + 0.666667
NA SPO2852 czcN domain proteinchromosome CDS3049641 603 + 0.658375
NA SPO2456 PPIC-type PPIASE domainchromosome CDS2610041 1239 + 0.686037
NA SPOA0171 conserved hypothetical proteinmegaplasmid CDS188994 762 + 0.580052
NA SPO1333 periplasmic serine protease, DO/DeqQ familychromosome CDS1395279 1458 + 0.665295
NA SPO3461 flagellar protein FlgJ, putativechromosome CDS3663933 288 - 0.607639
NA SPO1324 glutathione S-transferase family proteinchromosome CDS1387281 702 - 0.69943
NA SPO2335 ABC transporter, ATP-binding/permease proteinchromosome CDS2474742 1830 - 0.655738
NA SPO0953 conserved hypothetical proteinchromosome CDS1004465 879 - 0.63595
NA SPOA0438 peptidyl-prolyl cis-trans isomerase, FKBP-typemegaplasmid CDS485378 429 + 0.641026
NA SPO1329 HflK proteinchromosome CDS1391501 1152 + 0.651042
NA SPO2821 isoprenylcysteine carboxyl methyltransferase family proteinchromosome CDS3014804 450 - 0.617778
NA SPO2054 cytochrome c oxidase assembly proteinchromosome CDS2186547 1074 - 0.668529
NA SPO3197 conserved domain proteinchromosome CDS3409937 396 - 0.686869
NA SPO0295 conserved hypothetical proteinchromosome CDS308787 819 - 0.677656
NA SPO0092 heat shock protein, Hsp70 familychromosome CDS91224 1224 - 0.67402
NA SPO2059 glutathione S-transferase family proteinchromosome CDS2191417 843 + 0.6121
NA SPO3323 conserved hypothetical proteinchromosome CDS3521993 1938 - 0.652219
NA SPO2591 27 kDa outer membrane protein, putativechromosome CDS2746965 759 + 0.644269
NA SPO0403 conserved domain proteinchromosome CDS416250 885 - 0.671186
NA SPO2234 peptidyl-prolyl cis-trans isomerase, cyclophilin-typechromosome CDS2377242 507 - 0.593688
NA SPO0270 glutathione S-transferase family proteinchromosome CDS287383 612 + 0.689542
NA SPO0058 PPIC-type PPIASE domain proteinchromosome CDS59912 831 + 0.635379
NA SPO1160 conserved domain proteinchromosome CDS1211792 537 - 0.649907
NA SPO3261 glutathione S-transferase family proteinchromosome CDS3459931 669 - 0.544096
aat SPO1009 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS1059149 633 - 0.660348
ate SPO2569 arginine-tRNA-protein transferasechromosome CDS2720076 864 + 0.636574
ccdA SPO1896 cytochrome c-type biogenesis protein CcdAchromosome CDS2021197 753 + 0.632138
ccmA SPO2317 heme exporter protein CcmAchromosome CDS2453151 615 - 0.692683
ccmB SPO2316 heme exporter protein CcmBchromosome CDS2452498 657 - 0.692542
ccmC SPO2315 heme exporter protein CcmCchromosome CDS2451679 774 - 0.633075
ccmE SPO1877 cytochrome c-type biogenesis protein CcmEchromosome CDS2000953 444 + 0.612613
ccmF SPO1880 cytochrome c-type biogenesis protein CcmFchromosome CDS2002798 1965 + 0.652926
ccoN-1 SPO3526 cytochrome c oxidase, cbb3-type, subunit Ichromosome CDS3733975 1608 - 0.606965
ccoN-2 SPOA0190 cytochrome c oxidase, cbb3-type, subunit Imegaplasmid CDS201488 1623 - 0.592113
ccoQ-1 SPO3524 cytochrome c oxidase, cbb3-type, subunit IVchromosome CDS3732985 237 - 0.632911
clpA SPO3169 ATP-dependent Clp protease, ATP-binding subunit ClpAchromosome CDS3375845 2328 + 0.634021
clpB SPO3276 ATP-dependent Clp protease, ATP-binding subunit ClpBchromosome CDS3473444 2619 - 0.634975
clpP SPO1003 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS1055324 630 + 0.596825
clpX SPO1004 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS1056087 1275 + 0.616471
comM SPO0402 competence protein ComMchromosome CDS414677 1515 - 0.686469
coxF SPO2394 carbon monoxide dehydrogenase F proteinchromosome CDS2540453 783 - 0.632184
ctaG SPO3074 cytochrome c oxidase assembly protein CtaGchromosome CDS3282686 576 - 0.604167
cycH SPO2349 cytochrome c-type biogenesis protein CycHchromosome CDS2490597 1236 + 0.705502
cycJ SPOA0193 cytochrome c-type biogenesis protein CycJmegaplasmid CDS204477 420 - 0.619048
cycK SPOA0198 cytochrome c-type biogenesis protein CycKmegaplasmid CDS208131 2001 - 0.632184
cycL SPOA0196 cytochrome c-type biogenesis protein CycLmegaplasmid CDS207119 453 - 0.633554
cyoE SPO3075 protoheme IX farnesyltransferasechromosome CDS3283425 957 - 0.646813
dnaJ SPO0044 chaperone protein DnaJchromosome CDS44687 1146 + 0.644852
dnaK SPO0043 chaperone protein DnaKchromosome CDS42698 1914 + 0.609718
dsbE SPOA0197 thiol:disulfide interchange protein DsbEmegaplasmid CDS207568 567 - 0.608466
flgA SPO0176 flagellar basal-body P-ring formation protein FlgAchromosome CDS196056 417 - 0.652278
ftsH SPO3105 ATP-dependent metalloprotease FtsHchromosome CDS3315827 1920 - 0.625
glnD SPO0397 protein-P-II uridylyltransferasechromosome CDS408330 2727 - 0.640997
glnE SPO2523 glutamate-ammonia ligase adenylyltransferasechromosome CDS2668595 2802 - 0.691292
groEL SPO0887 chaperonin, 60 kDachromosome CDS943275 1641 + 0.627057
groES SPO0886 chaperonin, 10 kDachromosome CDS942925 288 + 0.59375
grpE SPO0010 co-chaperone GrpEchromosome CDS8205 564 + 0.652482
gst SPO1191 glutathione S-transferasechromosome CDS1244786 615 + 0.669919
hflC SPO1330 HflC proteinchromosome CDS1392652 876 + 0.64726
hmgC SPO0679 maleylacetoacetate isomerasechromosome CDS709636 642 - 0.668224
hslO SPO0024 chaperonin, 33 kDachromosome CDS22858 981 + 0.640163
hslU SPO3882 ATP-dependent hsl protease, ATP-binding subunit HslUchromosome CDS4097215 1308 + 0.633792
hslV SPO3880 ATP-dependent protease hslVchromosome CDS4095915 558 + 0.66129
lon SPO2613 ATP-dependent protease Lachromosome CDS2767583 2412 - 0.628109
msrA-1 SPO0014 methionine-S-sulfoxide reductasechromosome CDS14726 663 - 0.615385
msrA-2 SPO3740 methionine-S-sulfoxide reductasechromosome CDS3952494 513 - 0.612086
msrB SPO3741 methionine-R-sulfoxide reductasechromosome CDS3953003 450 - 0.611111
ohr SPO0254 organic hydroperoxide resistance proteinchromosome CDS273966 441 - 0.673469
pcm-1 SPO1239 protein-L-isoaspartate O-methyltransferasechromosome CDS1307788 654 + 0.67737
pcm-2 SPO2687 protein-L-isoaspartate O-methyltransferasechromosome CDS2839029 648 - 0.643519
radA SPO2674 DNA repair protein RadAchromosome CDS2828263 1362 + 0.675477
smpB SPO3806 SsrA-binding proteinchromosome CDS4021134 477 + 0.589099
soxS SPO0990 regulatory protein SoxSchromosome CDS1043673 378 - 0.65873
soxV SPO0991 sulfur oxidation V proteinchromosome CDS1044146 738 + 0.659892
soxW SPO0992 thioredoxin SoxWchromosome CDS1044911 576 + 0.616319
sufB SPO2023 FeS assembly protein SufBchromosome CDS2149615 1521 - 0.604208
sufC SPO2018 FeS assembly ATPase SufCchromosome CDS2146077 756 - 0.616402
tig SPO2288 trigger factorchromosome CDS2424967 1332 - 0.623123
trx SPO3874 thioredoxinchromosome CDS4091107 321 + 0.626168
trxB SPO0903 thioredoxin-disulfide reductasechromosome CDS958582 942 - 0.643312
ureD SPO1711 urease accessory protein UreDchromosome CDS1829519 774 + 0.624031
ureE SPO1715 urease accessory protein ureEchromosome CDS1832799 450 + 0.62
ureF SPO1716 urease accessory protein UreFchromosome CDS1833232 654 + 0.602446
ureG SPO1717 urease accessory protein UreGchromosome CDS1833882 648 + 0.603395
xdhC SPO0652 xanthine dehydrogenase accessory factorchromosome CDS673077 969 - 0.69453