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2024-05-01 09:37:49

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529

Number of genes found: 181

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Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Bd2304 band 7 proteinchromosome CDS2199757 753 - 0.492696
NA Bd0449 putative proteasechromosome CDS421852 1578 - 0.5
NA Bd2675 putative membrane protein with protease subunitchromosome CDS2593471 924 + 0.487013
NA Bd2630 trypsinchromosome CDS2546497 771 - 0.50454
NA Bd2535 putative serine proteasechromosome CDS2443225 801 - 0.496879
NA Bd1427 putative cysteine proteasechromosome CDS1346931 843 - 0.500593
NA Bd1255 heat-shock protein HSP33 homologuechromosome CDS1190910 900 + 0.513333
NA Bd0789 disulfide interchange proteinchromosome CDS741002 783 - 0.45083
NA Bd2321 Subtilisin-like serine proteasechromosome CDS2217226 2136 - 0.512172
NA Bd2343 conserved hypothetical proteinchromosome CDS2240847 2784 - 0.520833
NA Bd1444 Serine protease, subtilase familychromosome CDS1357959 3156 - 0.521229
NA Bd3513 hypothetical protein predicted by Glimmer/Criticachromosome CDS3419430 171 - 0.479532
NA Bd2722 probable HspC2 heat shock proteinchromosome CDS2643419 444 - 0.5
NA Bd3788 glycoprotein endopeptidasechromosome CDS3661325 705 + 0.504965
NA Bd2332 conserved hypothetical protein with trypsin domainchromosome CDS2230470 942 - 0.509554
NA Bd3482 Phosphotrypsinchromosome CDS3392582 840 + 0.503571
NA Bd0757 pilus related proteinchromosome CDS719145 417 + 0.522782
NA Bd3474 hypothetical protein predicted by Glimmer/Criticachromosome CDS3383467 1098 - 0.500911
NA Bd1543 hypothetical protein predicted by Glimmer/Criticachromosome CDS1468418 753 + 0.551129
NA Bd1065 conserved hypothetical proteinchromosome CDS1011196 513 + 0.51462
NA Bd0564 serine protease trypsin familychromosome CDS521646 834 - 0.532374
NA Bd1312 hypothetical protein predicted by Glimmer/Criticachromosome CDS1239080 2280 + 0.508333
NA Bd0035 Trypsinchromosome CDS31347 876 + 0.498858
NA Bd1365 peptide methionine sulfoxide reductasechromosome CDS1290147 528 + 0.454545
NA Bd1123 putative membrane-bound mannosyltransferasechromosome CDS1057668 1521 + 0.514135
NA Bd1604 putative cytochrome c biogenesis proteinchromosome CDS1534535 1416 + 0.502119
NA Bd0629 Trypsinchromosome CDS585679 798 + 0.515038
NA Bd2592 pyruvate formate-lyase activating enzymechromosome CDS2511284 468 + 0.514957
NA Bd2068 chromosome CDS1974166 837 + 0.535245
NA Bd2658 hypothetical protein predicted by Glimmer/Criticachromosome CDS2579742 390 + 0.528205
NA Bd0923 putative collagenasechromosome CDS875072 2496 + 0.512821
NA Bd2692 proteasechromosome CDS2614528 1542 - 0.500648
NA Bd0677 protein with DnaJ domainchromosome CDS627878 783 + 0.538953
NA Bd1341 putative disulphide-isomerasechromosome CDS1269236 1674 + 0.497013
NA Bd0029 subtilasechromosome CDS25900 1644 + 0.497567
NA Bd0565 hypothetical protein predicted by Glimmer/Criticachromosome CDS522483 1704 - 0.508216
NA Bd2805 hypothetical protein predicted by Glimmer/Criticachromosome CDS2715108 267 + 0.464419
NA Bd3414 hypothetical proteinchromosome CDS3325379 360 + 0.494444
NA Bd3481 Secreted trypsin-like serine proteasechromosome CDS3391644 927 + 0.507012
NA Bd1359 conserved hypothetical proteinchromosome CDS1284165 855 + 0.498246
NA Bd2541 SM-20-related proteinchromosome CDS2448910 630 + 0.5
NA Bd2659 hypothetical protein predicted by Glimmer/Criticachromosome CDS2580133 795 - 0.524528
NA Bd2832 hypothetical protein predicted by Glimmer/Criticachromosome CDS2738001 1545 - 0.534628
NA Bd0096 hypothetical protein predicted by Glimmer/Criticachromosome CDS89941 696 + 0.517241
NA Bd1283 Serine protease/subtilasechromosome CDS1215010 1404 - 0.529202
NA Bd0376 putative extracellular serine proteasechromosome CDS350642 1698 + 0.537102
NA Bd2923 Serine proteasechromosome CDS2832964 984 - 0.49187
NA Bd3415 putative serine proteasechromosome CDS3325802 852 + 0.523474
NA Bd1432 Serine protease, subtilase familychromosome CDS1349707 912 - 0.531798
NA Bd1043 Trypsinchromosome CDS987363 960 - 0.533333
NA Bd3525 conserved hypothetical proteinchromosome CDS3427878 528 + 0.501894
NA Bd2881 hypothetical protein predicted by Glimmer/Criticachromosome CDS2794000 564 - 0.51773
NA Bd0298 putative stress-induced protein OsmCchromosome CDS287653 408 - 0.519608
NA Bd3660 hypothetical protein predicted by Glimmer/Criticachromosome CDS3548776 891 - 0.501683
NA Bd2764 conserved hypothetical proteinchromosome CDS2682270 552 + 0.492754
NA Bd1436 osmotically inducible proteinchromosome CDS1353736 453 - 0.505519
NA Bd1606 probable cytochrome C-type biogenesis proteinchromosome CDS1535947 1641 + 0.522852
NA Bd3299 hypothetical protein predicted by Glimmer/Criticachromosome CDS3216680 735 + 0.548299
NA Bd2428 serin proteasechromosome CDS2332596 3102 - 0.522566
NA Bd0939 hypothetical protein predicted by Glimmer/Criticachromosome CDS889474 399 + 0.531328
NA Bd1794 conserved hypothetical proteinchromosome CDS1721167 882 - 0.502268
NA Bd1898 putative trypsinchromosome CDS1819015 801 - 0.481898
NA Bd2456 chromosome CDS2362145 1038 - 0.5
NA Bd2077 hypothetical protein predicted by Glimmer/Criticachromosome CDS1983935 1173 - 0.522592
NA Bd2066 glutathione S-transferase family proteinchromosome CDS1973268 720 - 0.525
NA Bd2627 periplasmic proteasechromosome CDS2543889 897 + 0.540691
NA Bd2076 hypothetical protein predicted by Glimmer/Criticachromosome CDS1982992 930 - 0.52043
NA Bd2269 serine protease, subtilase familychromosome CDS2167557 1650 - 0.487273
NA Bd2328 proteasechromosome CDS2227847 1260 + 0.511111
NA Bd0040 radical activating enzymechromosome CDS35411 639 - 0.43036
NA Bd2334 serin proteasechromosome CDS2231961 888 + 0.509009
NA Bd3547 metallopeptidasechromosome CDS3450174 1989 + 0.52539
NA Bd3790 hypothetical proteinchromosome CDS3663007 627 + 0.464115
NA Bd0222 hypothetical protein predicted by Glimmer/Criticachromosome CDS208916 465 + 0.486022
NA Bd3067 hypothetical protein predicted by Glimmer/Criticachromosome CDS2977303 651 + 0.490015
NA Bd2788 putative peptide methionine sulfoxide reductasechromosome CDS2700041 273 - 0.545788
NA Bd1336 conserved hypothetical proteinchromosome CDS1263368 405 - 0.528395
NA Bd2826 putative membrane proteinchromosome CDS2731059 1371 + 0.528811
NA Bd2545 subtilisin like serine proteasechromosome CDS2454661 1887 - 0.54531
NA Bd2368 hypothetical protein predicted by Glimmer/Criticachromosome CDS2272063 1023 - 0.487781
NA Bd1651 hypothetical protein predicted by Glimmer/Criticachromosome CDS1584095 519 - 0.481696
NA Bd0544 hypothetical protein predicted by Glimmer/Criticachromosome CDS505251 951 - 0.559411
NA Bd0957 hypothetical protein predicted by Glimmer/Criticachromosome CDS903036 1563 - 0.523992
NA Bd2676 hypothetical protein predicted by Glimmer/Criticachromosome CDS2594436 1959 + 0.453292
NA Bd2272 spb1 gene forserine protease (AJ428902) related proteinchromosome CDS2172444 558 + 0.501792
NA Bd2341 nifU related proteinchromosome CDS2238949 561 + 0.531194
NA Bd0909 putative redox proteinchromosome CDS861248 435 + 0.487356
NA Bd2356 hypothetical protein predicted by Glimmer/Criticachromosome CDS2257361 1059 + 0.498584
NA Bd1541 putative proteasechromosome CDS1465980 900 - 0.508889
NA Bd3857 alkaline serine protease, subtilase familychromosome CDS3721886 1230 + 0.53252
NA Bd2650 hypothetical protein predicted by Glimmer/Criticachromosome CDS2576018 375 + 0.514667
NA Bd0538 hypothetical protein predicted by Glimmer/Criticachromosome CDS500891 522 + 0.465517
NA Bd3087 proteasechromosome CDS2995743 1419 + 0.529951
NA Bd2690 hypothetical protein predicted by Glimmer/Criticachromosome CDS2612717 831 + 0.492178
NA Bd0706 Trypsinchromosome CDS664238 939 - 0.512247
NifU Bd0190 putative nitrogen-fixing protein NifUchromosome CDS176720 561 + 0.522282
XdhC Bd2635 putative xanthine dehydrogenase accessory factorchromosome CDS2552977 783 + 0.528736
aat Bd0990 leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS935164 666 + 0.534535
ahpC Bd2517 alkyl hydroperoxide reductase, C22 subunitchromosome CDS2422288 567 + 0.45679
ahpF Bd2518 alkyl hydroperoxide reductase, subunit Fchromosome CDS2423041 1566 + 0.507024
algY Bd2800 serine protease MucD precursorchromosome CDS2710355 1425 + 0.54386
apr Bd0521 Serine proteasechromosome CDS485102 2205 - 0.513832
bcp Bd1805 bacterioferritin comigratory proteinchromosome CDS1732876 471 + 0.452229
bsaA Bd0522 chromosome CDS487450 561 - 0.508021
bsaA Bd1947 chromosome CDS1859443 657 - 0.48554
btuE Bd0326 putative vitamin B12 transport proteinchromosome CDS309996 549 - 0.510018
clpA Bd1288 ATP-dependent Clp protease subunitchromosome CDS1220352 2331 - 0.512227
clpB Bd3048 ATPase with chaperone activity, two ATP-binding domainschromosome CDS2957139 2568 - 0.540888
clpP Bd3754 ATP-dependent Clp protease proteolytic subunitchromosome CDS3627749 639 - 0.497653
clpX Bd3753 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS3626447 1296 - 0.5
comM Bd2299 competence protein ComM homologchromosome CDS2194016 1470 - 0.563265
ctaA Bd2217 cytochrome aa3 controlling protein CtaAchromosome CDS2114309 909 + 0.537954
ctaB Bd0290 protoheme IX farnesyltransferasechromosome CDS275180 879 + 0.507395
dnaJ Bd3872 DnaJ proteinchromosome CDS3735432 1008 + 0.552579
dnaJ Bd1296 DnaJ proteinchromosome CDS1227361 1116 + 0.543907
dnaK Bd1298 Chaperone protein dnaKchromosome CDS1228736 1914 + 0.503657
dsbD Bd3255 thiol:disulfide interchange proteinchromosome CDS3172290 1962 + 0.512742
dys Bd2349 chromosome CDS2251412 972 - 0.468107
fkpA Bd1903 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS1823288 348 - 0.505747
fkpA Bd2569 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS2482751 696 - 0.454023
flgA Bd0532 flagellar protein FlgAchromosome CDS496651 933 + 0.505895
flgJ Bd0536 flagellar protein FlgJchromosome CDS499642 708 + 0.524011
fliJ Bd3400 flagellar basal body formation protein fliJchromosome CDS3311692 450 - 0.466667
fliS Bd0611 flagellar protein FliSchromosome CDS572029 411 + 0.462287
ftsH Bd1928 cell division proteinchromosome CDS1840225 1938 + 0.507224
ftsH Bd2667 membrane bound zinc metallopeptidasechromosome CDS2585464 1848 - 0.519481
gcp Bd0636 O-sialoglycoprotein endopeptidasechromosome CDS592539 1038 + 0.536609
glnD Bd1955 protein-P-II uridylyltransferasechromosome CDS1869613 2310 + 0.500866
glnE Bd0178 glutamate-ammonia-ligase adenylyltransferasechromosome CDS164672 2301 - 0.520209
grlA Bd2887 chromosome CDS2797466 306 + 0.473856
groEL Bd0099 60 KDA chaperoninchromosome CDS91156 1641 + 0.466789
groES Bd3349 chaperoninchromosome CDS3260588 675 - 0.478519
groES Bd0097 chaperonin groESchromosome CDS90797 303 + 0.452145
grpE Bd3871 GrpE proteinchromosome CDS3734902 519 + 0.508671
grxC Bd1310 glutaredoxinchromosome CDS1237945 297 - 0.464646
gshA Bd3760 putative glutamate--cysteine ligasechromosome CDS3633856 1257 - 0.522673
gst Bd3594 chromosome CDS3489407 627 + 0.521531
gst Bd3237 glutathione S-transferase family proteinchromosome CDS3153102 669 + 0.511211
hsp Bd3286 molecular chaperone, Hsp70 familychromosome CDS3205719 1290 + 0.524031
hspA Bd3630 low molecular weight heat shock proteinchromosome CDS3526731 492 + 0.457317
hspC Bd0917 small heat shock proteinchromosome CDS871050 462 + 0.45671
htpG Bd1806 heat shock protein htpGchromosome CDS1733417 1878 - 0.493078
htpX Bd1287 heat shock protein HtpXchromosome CDS1219394 897 - 0.512821
htpx Bd2798 protease heat shock proteinchromosome CDS2709234 813 + 0.512915
htrA Bd3488 similar to heat-shock protein htrA serine proteasechromosome CDS3398441 1056 + 0.518939
htrA Bd0922 periplasmic serine proteasechromosome CDS873473 1431 + 0.528302
lon Bd3749 ATP-dependent protease LAchromosome CDS3620766 2496 - 0.482772
lon Bd2144 ATP-dependent protease LAchromosome CDS2048150 2382 + 0.524769
lon Bd3876 ATP-dependent protease Lachromosome CDS3739212 2406 + 0.492934
maiA Bd0291 maleylacetoacetate isomerase / glutathione S-transferasechromosome CDS276086 681 - 0.488987
msrA Bd1058 chromosome CDS1003403 603 - 0.467662
nfeD Bd2305 membrane protein necessary for nodulation/competitivenesschromosome CDS2200522 1275 - 0.526275
pcm Bd2618 L-isoaspartyl protein carboxyl methyltransferasechromosome CDS2535203 723 - 0.507607
pcp Bd0879 pyrrolidone-carboxylate peptidasechromosome CDS831144 621 + 0.515298
pilD Bd0862 leader peptidase (prepilin peptidase)chromosome CDS809503 780 + 0.512821
ppiA Bd0177 peptidyl-prolyl cis-trans isomerasechromosome CDS164001 636 - 0.47327
ppiC Bd0018 Parvulin-like peptidyl-prolyl isomerasechromosome CDS17312 969 - 0.505676
ppiD Bd0019 chromosome CDS18293 810 - 0.464198
prsA Bd0258 peptidyl-prolyl cis-trans isomerase Cchromosome CDS247520 273 + 0.509158
radA Bd2712 DNA repair protein homologchromosome CDS2634636 1392 + 0.512213
resA Bd1980 cytochrome c biogenesis (thioredoxin)chromosome CDS1891113 510 + 0.511765
resA Bd2208 cytochrome c biogenesis (thioredoxin) related proteinchromosome CDS2106871 492 + 0.485772
resA Bd2948 thiol:disulfide interchange protein tlpAchromosome CDS2858909 594 - 0.516835
slyD Bd0336 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS321102 474 + 0.50211
slyD Bd0722 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS679847 480 + 0.502083
smpB Bd0638 SSRA-binding proteinchromosome CDS594398 459 + 0.479303
sohB Bd2188 SohB protein, peptidase U7 familychromosome CDS2087877 1020 + 0.506863
spb1 Bd3238 Serine protease precursorchromosome CDS3153845 1581 + 0.56167
splA Bd0994 serine protease SplAchromosome CDS938849 876 + 0.523973
sppA Bd1067 signal peptide peptidasechromosome CDS1013879 969 + 0.505676
sufB Bd0186 ABC transporter permeasechromosome CDS171961 1458 + 0.482853
sufC Bd0187 Iron-regulated ABC transporter ATPase subunit SufCchromosome CDS173461 759 + 0.470356
sufD Bd0188 Transport protein involved in the [Fe-S] cluster assembly.chromosome CDS174229 1260 + 0.503968
surA Bd0017 survival protein SurA precursorchromosome CDS16375 924 - 0.482684
tig Bd3764 trigger factorchromosome CDS3638321 1314 + 0.447489
tpx Bd0315 thiol peroxidasechromosome CDS302192 498 + 0.508032
trx Bd2468 thioredoxinchromosome CDS2372268 327 - 0.480122
trx Bd0175 thioredoxinchromosome CDS163152 351 + 0.48433
trxB Bd0373 chromosome CDS348261 945 + 0.518519
yhfA Bd2165 conserved hypothetical proteinchromosome CDS2067246 459 - 0.522876
yhfA Bd1139 conserved hypothetical proteinchromosome CDS1080600 447 - 0.512304