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2024-05-03 08:06:27

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6

Number of genes found: 175

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0018 16 kDa heat shock protein Achromosome 1 CDS15073 438 + 0.440639
VP0025 conserved hypothetical proteinchromosome 1 CDS23913 249 - 0.465863
VP0130 conserved hypothetical proteinchromosome 1 CDS141147 876 - 0.47032
VP0146 conserved hypothetical proteinchromosome 1 CDS155961 585 - 0.473504
VP0151 hypothetical proteinchromosome 1 CDS161478 1881 + 0.46252
VP0249 protease HslVU, ATPase subunit HslUchromosome 1 CDS260134 1332 - 0.476727
VP0250 protease HslVU, subunit HslVchromosome 1 CDS261489 552 - 0.490942
VP0285 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS281860 621 - 0.47182
VP0306 peptide methionine sulfoxide reductasechromosome 1 CDS300349 639 - 0.467919
VP0338 survival protein SurAchromosome 1 CDS330379 1284 - 0.462617
VP0340 DnaJ-related proteinchromosome 1 CDS334337 855 + 0.463158
VP0408 O-sialoglycoprotein endopeptidasechromosome 1 CDS408774 1017 + 0.496559
VP0423 glutamate-ammonia-ligase adenylyltransferasechromosome 1 CDS424012 2844 + 0.479606
VP0432 protease DegSchromosome 1 CDS437194 1065 - 0.475117
VP0433 protease DOchromosome 1 CDS438455 1368 - 0.487573
VP0444 stringent starvation protein Achromosome 1 CDS446224 636 + 0.429245
VP0510 thiol:disulfide interchange protein DsbCchromosome 1 CDS525615 789 + 0.470215
VP0536 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS553139 432 + 0.446759
VP0544 conserved hypothetical proteinchromosome 1 CDS560827 1113 - 0.504043
VP0561 ClpB proteinchromosome 1 CDS578545 2574 + 0.454157
VP0567 putative proteasechromosome 1 CDS589496 1401 - 0.465382
VP0580 antioxidant, AhpC/Tsa familychromosome 1 CDS606398 612 - 0.457516
VP0586 hypothetical proteinchromosome 1 CDS612621 1161 + 0.482343
VP0599 chaperone protein HscBchromosome 1 CDS624480 516 + 0.46124
VP0600 chaperone protein HscAchromosome 1 CDS625017 1854 + 0.483819
VP0644 small protein Bchromosome 1 CDS674836 486 - 0.444444
VP0651 GrpEchromosome 1 CDS681223 597 + 0.422111
VP0653 DnaK proteinchromosome 1 CDS683859 1914 + 0.449321
VP0654 DnaJ proteinchromosome 1 CDS685977 1146 + 0.482548
VP0772 polar flagellar FlgAchromosome 1 CDS808567 747 - 0.460509
VP0784 peptidoglycan hydrolase FlgJchromosome 1 CDS818166 927 + 0.477886
VP0804 conserved hypothetical proteinchromosome 1 CDS838050 462 - 0.465368
VP0805 conserved hypothetical proteinchromosome 1 CDS838521 918 - 0.448802
VP0806 conserved hypothetical proteinchromosome 1 CDS839599 855 - 0.451462
VP0817 selenoprotein W-related proteinchromosome 1 CDS846263 279 - 0.455197
VP0821 heat shock protein HtpGchromosome 1 CDS849041 1905 + 0.449344
VP0866 conserved hypothetical proteinchromosome 1 CDS900037 702 + 0.488604
VP0916 trigger factorchromosome 1 CDS951808 1305 + 0.449808
VP0917 ATP-dependent Clp protease, proteolytic subunitchromosome 1 CDS953242 603 + 0.45937
VP0918 ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome 1 CDS953916 1281 + 0.452771
VP0919 ATP-dependent protease LAchromosome 1 CDS955328 2352 + 0.452381
VP0921 peptidyl-prolyl cis-trans isomerse Dchromosome 1 CDS958344 1860 + 0.448925
VP0992 pyruvate formate-lyase 1 activating enzymechromosome 1 CDS1035866 741 - 0.438596
VP1014 ATP-dependent Clp protease, ATP-binding subunit ClpAchromosome 1 CDS1061914 2271 + 0.453985
VP1017 arginyl-tRNA-protein transferase-related proteinchromosome 1 CDS1065726 702 - 0.448718
VP1018 leucyl/phenylalanyl-tRNA-protein transferasechromosome 1 CDS1066424 711 - 0.444444
VP1118 heat shock protein HtpXchromosome 1 CDS1177119 864 + 0.479167
VP1149 peptidyl-prolyl cis-trans isomerase Bchromosome 1 CDS1206710 495 - 0.460606
VP1180 putative lipase activator proteinchromosome 1 CDS1238473 852 - 0.428404
VP1203 heat shock protein HslJchromosome 1 CDS1265565 447 - 0.404922
VP1233 glutaredoxin 1chromosome 1 CDS1301297 267 - 0.430712
VP1249 transport ATP-binding protein CydCchromosome 1 CDS1317354 1722 - 0.48374
VP1250 transport ATP-binding protein CydDchromosome 1 CDS1319068 1788 - 0.469239
VP1251 thioredoxin reductasechromosome 1 CDS1320959 960 - 0.470833
VP1271 conserved hypothetical proteinchromosome 1 CDS1346912 462 + 0.430736
VP1317 putative glutaredoxinchromosome 1 CDS1396911 231 - 0.428571
VP1352 putative glutathione S-transferasechromosome 1 CDS1435309 669 + 0.455904
VP1381 pyruvate formate lyase activating enzymechromosome 1 CDS1466564 882 + 0.443311
VP1392 putative ClpA/B-type proteasechromosome 1 CDS1492844 2673 - 0.470632
VP1415 hypothetical proteinchromosome 1 CDS1522119 2205 + 0.413152
VP1422 SM-20-related proteinchromosome 1 CDS1528144 603 + 0.444444
VP1438 DnaK-related proteinchromosome 1 CDS1543259 2808 - 0.485755
VP1439 DnaK-related proteinchromosome 1 CDS1546128 1944 - 0.498971
VP1542 cytochrome c oxidase, subunit CcoQchromosome 1 CDS1652713 174 - 0.431034
VP1544 cytochrome c oxidase, subunit CcoNchromosome 1 CDS1653529 1434 - 0.453278
VP1590 ATP-dependent protease LA-related proteinchromosome 1 CDS1681842 1638 + 0.420635
VP1596 conserved hypothetical proteinchromosome 1 CDS1688228 243 - 0.411523
VP1639 conserved hypothetical proteinchromosome 1 CDS1753565 669 - 0.463378
VP1642 putative trypsinchromosome 1 CDS1757057 1551 - 0.497743
VP1807 conserved hypothetical proteinchromosome 1 CDS1915251 408 - 0.39951
VP1923 NrfFchromosome 1 CDS2008515 411 - 0.379562
VP1924 thiol:disulfide interchange protein DsbEchromosome 1 CDS2008912 534 - 0.425094
VP1925 NrfEchromosome 1 CDS2009423 1908 - 0.463836
VP1931 putaive YfrE proteinchromosome 1 CDS2016177 708 - 0.425141
VP2005 putative thioredoxinchromosome 1 CDS2099298 516 - 0.445736
VP2006 putative suppressor for copper-sensitivity B precursorchromosome 1 CDS2099810 2112 - 0.495265
VP2032 sohB protein, peptidase U7 familychromosome 1 CDS2129878 1062 - 0.445386
VP2073 disulfide bond formation protein Bchromosome 1 CDS2178375 537 + 0.437616
VP2086 putative glutathione S-transferasechromosome 1 CDS2194117 948 - 0.452532
VP2116 hypothetical proteinchromosome 1 CDS2222072 630 - 0.444444
VP2117 putative glutaredoxin proteinchromosome 1 CDS2222777 336 - 0.46131
VP2152 protease IVchromosome 1 CDS2263939 1851 + 0.467855
VP2156 PilB-related proteinchromosome 1 CDS2268369 444 - 0.448198
VP2206 peptidase, insulinase familychromosome 1 CDS2317238 2778 + 0.467603
VP2215 putative cytochrome c-type biogenesis proteinchromosome 1 CDS2330222 1218 - 0.454844
VP2216 putative cytochrome c-type biogenesis proteinchromosome 1 CDS2331439 486 - 0.45679
VP2217 thiol:disulfide interchange protein DsbEchromosome 1 CDS2331921 555 - 0.454054
VP2218 cytochrome c-type biogenesis protein CcmFchromosome 1 CDS2332477 1977 - 0.487607
VP2219 cytochrome c-type biogenesis protein CcmEchromosome 1 CDS2334450 486 - 0.454733
VP2221 heme exporter protein Cchromosome 1 CDS2335150 744 - 0.471774
VP2222 heme exporter protein Bchromosome 1 CDS2336003 669 - 0.446936
VP2223 heme exporter protein Achromosome 1 CDS2336673 618 - 0.441748
VP2245 polar flagellar assembly protein FliJchromosome 1 CDS2358238 444 - 0.475225
VP2254 polar flagellar protein FlaJchromosome 1 CDS2368533 411 - 0.467153
VP2275 bacterioferritin comigratory proteinchromosome 1 CDS2384491 471 + 0.464968
VP2277 conserved hypothetical proteinchromosome 1 CDS2386157 246 - 0.455285
VP2320 protein-P-II uridylyltransferasechromosome 1 CDS2432305 2625 + 0.481524
VP2355 peptidyl-prolyl cis-trans isomerase Achromosome 1 CDS2466222 546 + 0.461538
VP2421 hypothetical proteinchromosome 1 CDS2539533 1317 - 0.458618
VP2422 hypothetical proteinchromosome 1 CDS2540909 489 - 0.464213
VP2429 DNA repair protein RadAchromosome 1 CDS2548262 1380 - 0.492754
VP2447 putative proteasechromosome 1 CDS2568166 1014 + 0.494083
VP2448 putative proteasechromosome 1 CDS2569188 891 + 0.453423
VP2463 cell division protein FtsHchromosome 1 CDS2585491 1989 - 0.457516
VP2526 type IV prepilin-like proteins leader peptide processing enzymechromosome 1 CDS2666661 870 + 0.434483
VP2555 protein-L-isoaspartate O-methyltransferasechromosome 1 CDS2699788 627 - 0.467305
VP2627 conserved hypothetical proteinchromosome 1 CDS2768485 273 + 0.443223
VP2753 peroxiredoxin family protein/glutaredoxinchromosome 1 CDS2918352 729 + 0.449931
VP2778 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS2945109 783 - 0.444444
VP2783 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome 1 CDS2948391 582 - 0.496564
VP2814 HflC proteinchromosome 1 CDS2977347 981 - 0.456677
VP2815 HflK proteinchromosome 1 CDS2978330 1203 - 0.466334
VP2851 chaperonin GroELchromosome 1 CDS3018269 1644 - 0.484185
VP2852 chaperonin, 10 kDa subunitchromosome 1 CDS3019990 291 - 0.443299
VP2865 thiol:disulfide interchange protein DsbDchromosome 1 CDS3032469 1842 + 0.498914
VP3001 thioredoxinchromosome 1 CDS3204384 327 - 0.443425
VP3054 thiol:disulfide interchange proteinchromosome 1 CDS3260461 603 + 0.442786
VP3057 ComM-related proteinchromosome 1 CDS3263159 1524 - 0.50853
VPA0022 hypothetical proteinchromosome 2 CDS19809 636 + 0.462264
VPA0023 peptidyl-prolyl cis-trans isomerase Bchromosome 2 CDS20547 495 - 0.476768
VPA0063 hypothetical proteinchromosome 2 CDS55221 621 - 0.478261
VPA0172 hypothetical proteinchromosome 2 CDS168610 429 - 0.452214
VPA0207 peptide methionine sulfoxide reductasechromosome 2 CDS208235 1143 - 0.450569
VPA0208 conserved hypothetical proteinchromosome 2 CDS209583 399 + 0.486216
VPA0227 alkaline serine proteasechromosome 2 CDS231409 2034 + 0.507866
VPA0263 LfgAchromosome 2 CDS264970 708 - 0.501412
VPA0272 putative flagellar proteinchromosome 2 CDS271942 540 + 0.492593
VPA0286 chaperonin, 10 kDa subunitchromosome 2 CDS286375 291 + 0.412371
VPA0287 chaperonin, 60 kDa subunitchromosome 2 CDS286699 1599 + 0.490932
VPA0301 putative peptide methionine sulfoxide reductasechromosome 2 CDS302385 480 - 0.454167
VPA0386 glutaredoxin 2chromosome 2 CDS380989 630 - 0.455556
VPA0432 peptidyl-prolyl cis-trans isomerase Cchromosome 2 CDS423443 282 + 0.439716
VPA0449 putative serine proteinasechromosome 2 CDS441200 1905 + 0.498688
VPA0524 glutaredoxin-related proteinchromosome 2 CDS529006 615 - 0.479675
VPA0538 putative cytochrome c oxidase assembly transmembrane proteinchromosome 2 CDS542682 540 + 0.485185
VPA0543 putative cytochrome c oxidase assembly proteinchromosome 2 CDS545730 1020 + 0.47451
VPA0544 putative cytochrome c oxidase assembly factorchromosome 2 CDS546742 909 + 0.473047
VPA0545 peptidyl-prolyl cis-trans isomerase-related proteinchromosome 2 CDS547729 474 - 0.417722
VPA0546 putative disulfide oxidoreductasechromosome 2 CDS548216 633 - 0.436019
VPA0549 hypothetical proteinchromosome 2 CDS549857 360 - 0.433333
VPA0587 putative pyrrolidone-carboxylate peptidasechromosome 2 CDS585302 639 + 0.480438
VPA0631 putative protoheme IX farnesyltransferasechromosome 2 CDS636765 867 + 0.492503
VPA0642 putative glutathione S-transferasechromosome 2 CDS647163 648 + 0.46142
VPA0650 heat shock protein 70 family proteinchromosome 2 CDS655051 1353 + 0.486327
VPA0704 hypothetical proteinchromosome 2 CDS728937 1854 - 0.475728
VPA0718 putative membrane proteinchromosome 2 CDS750211 444 - 0.342342
VPA0861 conserved hypothetical proteinchromosome 2 CDS901224 789 - 0.463878
VPA0867 DnaJ-related proteinchromosome 2 CDS907095 621 + 0.455717
VPA0935 hypothetical proteinchromosome 2 CDS967606 684 - 0.440058
VPA0940 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome 2 CDS972130 471 - 0.464968
VPA0972 thioredoxin 2chromosome 2 CDS1018257 435 + 0.45977
VPA0994 putative membrane proteinchromosome 2 CDS1047215 789 - 0.381496
VPA1028 putative ClpA/B-type chaperonechromosome 2 CDS1082229 2568 - 0.428738
VPA1051 putative glutathione S-transferasechromosome 2 CDS1109834 615 - 0.455285
VPA1071 putative extracellular serine proteasechromosome 2 CDS1129892 1779 + 0.496908
VPA1099 hypothetical proteinchromosome 2 CDS1158381 474 - 0.455696
VPA1105 putative membrane proteinchromosome 2 CDS1165804 1380 + 0.502174
VPA1106 putative stomatin-like proteinchromosome 2 CDS1167193 786 + 0.483461
VPA1251 putative ABC transporterchromosome 2 CDS1324650 546 + 0.437729
VPA1271 thiol:disulfide interchange proteinchromosome 2 CDS1352801 600 - 0.445
VPA1293 putative antioxidantchromosome 2 CDS1371018 474 + 0.464135
VPA1298 putative glutathione S-transferasechromosome 2 CDS1374819 858 - 0.486014
VPA1417 putative glutathione S-transferase family proteinchromosome 2 CDS1489349 618 + 0.432039
VPA1465 hypothetical proteinchromosome 2 CDS1560722 2307 - 0.498483
VPA1493 ATP-dependent protease LA-related proteinchromosome 2 CDS1593037 2361 - 0.469293
VPA1531 putative serine proteasechromosome 2 CDS1633161 1038 + 0.475915
VPA1532 hypothetical proteinchromosome 2 CDS1634236 441 - 0.471655
VPA1551 LafCchromosome 2 CDS1652994 387 + 0.449612
VPA1568 putative pyruvate formate-lyase 3 activating enzymechromosome 2 CDS1665560 930 - 0.462366
VPA1608 hypothetical proteinchromosome 2 CDS1706553 1272 + 0.44261
VPA1615 putative outer membrane proteinchromosome 2 CDS1713346 717 + 0.425384
VPA1670 putative collagenase family proteasechromosome 2 CDS1789143 1992 + 0.478916
VPA1681 putative organic hydroperoxide resistance proteinchromosome 2 CDS1802344 423 - 0.501182
VPA1683 alkyl hydroperoxide reductase c22 proteinchromosome 2 CDS1803624 558 + 0.46595
VPA1684 alkyl hydroperoxide reductase, subunit Fchromosome 2 CDS1804339 1569 + 0.488846