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2024-05-15 08:04:18

Gene list

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COG category: NOT ANALYZED
Genomic element: pHCM1

Number of genes found: 348

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pHCM1 repeat_unit43824 19 + 0.315789
NA pHCM1 misc_feature161477 225 + 0.551111
NA pHCM1 repeat_unit201107 65 - 0.384615
NA pHCM1 repeat_unit29435 17 + 0.470588
NA pHCM1 misc_feature174284 90 - 0.6
NA pHCM1 misc_feature190933 366 + 0.491803
NA pHCM1 repeat_unit54848 54 + 0.555556
NA pHCM1 misc_feature174188 198 - 0.621212
NA pHCM1 misc_feature153992 6 -
NA pHCM1 repeat_unit125916 12 + 0.583333
NA pHCM1 RBS91595 7 + 0.428571
NA pHCM1 misc_feature71096 90 + 0.511111
NA pHCM1 repeat_unit176752 749 - 0.536716
NA pHCM1 repeat_unit55966 53 + 0.54717
NA pHCM1 RBS199880 5 - 0.4
NA pHCM1 repeat_unit54902 53 + 0.54717
NA pHCM1 repeat_unit43692 19 + 0.315789
NA pHCM1 RBS213393 5 - 0.4
NA pHCM1 misc_feature114888 69 - 0.637681
NA pHCM1 RBS85832 5 + 0.6
NA pHCM1 misc_feature120783 69 - 0.521739
NA pHCM1 RBS149568 4 - 0.75
NA pHCM1 repeat_unit175343 1317 + 0.485953
NA pHCM1 repeat_unit133454 24 - 0.333333
NA pHCM1 RBS85392 5 + 0.6
NA pHCM1 misc_feature162100 48 + 0.375
NA pHCM1 RBS161900 6 + 0.333333
NA pHCM1 RBS163359 4 + 0.75
NA pHCM1 repeat_unit184524 15 - 0.333333
NA pHCM1 repeat_unit43476 19 + 0.315789
NA pHCM1 RBS148723 7 + 0.571429
NA pHCM1 RBS134372 5 + 0.4
NA pHCM1 repeat_unit1871 715 - 0.532867
NA pHCM1 repeat_unit28329 17 - 0.588235
NA pHCM1 repeat_unit127156 12 - 0.583333
NA pHCM1 repeat_unit108542 20 - 0.45
NA pHCM1 RBS37297 4 - 0.75
NA pHCM1 repeat_unit56284 52 + 0.557692
NA pHCM1 RBS536 5 - 0.6
NA pHCM1 misc_feature174920 57 + 0.614035
NA pHCM1 repeat_unit43581 21 + 0.52381
NA pHCM1 repeat_unit56127 54 + 0.592593
NA pHCM1 RBS200684 5 - 0.4
NA pHCM1 RBS40505 6 - 0.333333
NA pHCM1 repeat_unit108597 20 - 0.45
NA pHCM1 RBS99478 6 + 0.5
NA pHCM1 RBS128593 4 + 0.75
NA pHCM1 misc_feature42238 729 + 0.436214
NA pHCM1 repeat_unit119849 123 - 0.471545
NA pHCM1 misc_feature119188 600 - 0.598333
NA pHCM1 repeat_unit108630 20 - 0.45
NA pHCM1 misc_feature154180 24 - 0.625
NA pHCM1 RBS151041 5 + 0.6
NA pHCM1 repeat_unit168511 822 + 0.524331
NA pHCM1 misc_feature179246 141 + 0.460993
NA pHCM1 RBS118259 4 + 0.75
NA pHCM1 RBS113587 4 + 0.5
NA pHCM1 RBS171606 6 - 0.666667
NA pHCM1 repeat_unit109532 13 - 0.384615
NA pHCM1 repeat_unit107120 13 - 0.307692
NA pHCM1 repeat_unit42012 19 + 0.210526
NA pHCM1 repeat_unit43520 19 + 0.368421
NA pHCM1 repeat_unit28392 17 - 0.470588
NA pHCM1 RBS137197 7 - 0.571429
NA pHCM1 misc_feature78431 1434 + 0.500697
NA pHCM1 misc_feature120504 378 - 0.502645
NA pHCM1 misc_feature185813 357 + 0.537815
NA pHCM1 RBS5098 5 - 0.4
NA pHCM1 RBS60935 4 - 0.75
NA pHCM1 repeat_unit107539 20 + 0.45
NA pHCM1 misc_feature139240 372 + 0.47043
NA pHCM1 RBS197715 7 - 0.571429
NA pHCM1 repeat_unit43605 19 + 0.263158
NA pHCM1 misc_feature174920 108 + 0.62037
NA pHCM1 misc_feature34401 21 - 0.47619
NA pHCM1 repeat_unit159639 15 - 0.533333
NA pHCM1 RBS1697 6 - 0.5
NA pHCM1 RBS9873 6 - 0.666667
NA pHCM1 misc_feature109093 6 +
NA pHCM1 misc_feature173565 90 - 0.6
NA pHCM1 repeat_unit43910 19 + 0.315789
NA pHCM1 misc_feature131475 387 - 0.462532
NA pHCM1 RBS15523 7 - 0.428571
NA pHCM1 misc_feature28582 750 + 0.478667
NA pHCM1 misc_feature154542 612 + 0.441176
NA pHCM1 misc_feature26475 1602 + 0.508115
NA pHCM1 repeat_unit142985 1315 + 0.439544
NA pHCM1 misc_feature82354 24 + 0.583333
NA pHCM1 RBS37639 4 + 0.75
NA pHCM1 misc_feature166006 48 + 0.5
NA pHCM1 misc_feature114900 57 - 0.631579
NA pHCM1 repeat_unit56388 54 + 0.537037
NA pHCM1 repeat_unit161461 14 - 0.5
NA pHCM1 misc_feature160809 603 - 0.538972
NA pHCM1 repeat_unit43495 21 + 0.380952
NA pHCM1 repeat_unit108722 20 - 0.45
NA pHCM1 RBS131866 4 - 0.75
NA pHCM1 repeat_unit42033 19 + 0.263158
NA pHCM1 misc_feature125916 1252 + 0.474441
NA pHCM1 repeat_unit43736 19 + 0.315789
NA pHCM1 misc_feature186228 1038 + 0.523121
NA pHCM1 repeat_unit176648 12 - 0.583333
NA pHCM1 RBS154514 6 + 0.333333
NA pHCM1 RBS59580 6 - 0.5
NA pHCM1 RBS185628 4 - 0.5
NA pHCM1 RBS34186 5 - 0.4
NA pHCM1 repeat_unit113131 17 - 0.529412
NA pHCM1 RBS41598 6 - 0.5
NA pHCM1 repeat_unit28415 17 - 0.411765
NA pHCM1 misc_feature106681 6 +
NA pHCM1 RBS184865 4 - 0.75
NA pHCM1 repeat_unit112896 17 + 0.529412
NA pHCM1 RBS3653 4 - 0.75
NA pHCM1 repeat_unit107594 20 + 0.5
NA pHCM1 misc_feature137856 57 - 0.403509
NA pHCM1 repeat_unit160655 820 - 0.523171
NA pHCM1 RBS96003 4 + 0.75
NA pHCM1 RBS201421 6 + 0.666667
NA pHCM1 repeat_unit157128 12 - 0.583333
NA pHCM1 repeat_unit41991 19 + 0.210526
NA pHCM1 repeat_unit107572 20 + 0.45
NA pHCM1 misc_feature177387 24 - 0.625
NA pHCM1 repeat_unit29394 17 + 0.529412
NA pHCM1 RBS173678 6 - 0.333333
NA pHCM1 misc_feature104551 726 - 0.511019
NA pHCM1 misc_feature116602 33 + 0.69697
NA pHCM1 misc_feature82300 1311 + 0.443173
NA pHCM1 repeat_unit169318 15 - 0.533333
NA pHCM1 misc_feature122380 525 + 0.615238
NA pHCM1 repeat_unit108487 20 - 0.45
NA pHCM1 repeat_unit106385 13 + 0.384615
NA pHCM1 repeat_unit29851 17 + 0.647059
NA pHCM1 RBS64996 4 + 0.5
NA pHCM1 RBS118561 5 + 0.6
NA pHCM1 repeat_unit55912 54 + 0.5
NA pHCM1 RBS112424 6 + 0.333333
NA pHCM1 misc_feature115520 90 + 0.588889
NA pHCM1 misc_feature122527 39 + 0.641026
NA pHCM1 repeat_unit44055 21 + 0.380952
NA pHCM1 RBS212781 5 - 0.6
NA pHCM1 repeat_unit55753 54 + 0.592593
NA pHCM1 repeat_unit108575 20 - 0.45
NA pHCM1 misc_feature179294 66 + 0.439394
NA pHCM1 misc_feature217569 150 - 0.506667
NA pHCM1 repeat_unit56442 54 + 0.518519
NA pHCM1 misc_feature163369 603 + 0.54063
NA pHCM1 RBS174877 4 + 0.75
NA pHCM1 RBS44347 4 + 0.75
NA pHCM1 RBS77418 5 + 0.8
NA pHCM1 repeat_unit29452 17 - 0.588235
NA pHCM1 misc_feature115508 198 + 0.616162
NA pHCM1 RBS96996 4 + 0.75
NA pHCM1 repeat_unit183224 15 + 0.333333
NA pHCM1 RBS104139 4 + 0.75
NA pHCM1 RBS114996 4 - 0.75
NA pHCM1 RBS122356 4 + 0.75
NA pHCM1 RBS10938 4 - 0.75
NA pHCM1 repeat_unit133176 24 + 0.291667
NA pHCM1 misc_feature165474 24 + 0.666667
NA pHCM1 misc_feature108797 748 + 0.532086
NA pHCM1 repeat_unit43867 19 + 0.263158
NA pHCM1 repeat_unit43667 21 + 0.52381
NA pHCM1 repeat_unit43235 19 - 0.315789
NA pHCM1 repeat_unit54686 54 + 0.537037
NA pHCM1 misc_feature137574 1098 - 0.498179
NA pHCM1 RBS100397 4 + 0.75
NA pHCM1 repeat_unit43780 19 + 0.368421
NA pHCM1 misc_feature22114 24 + 0.541667
NA pHCM1 misc_feature155094 33 + 0.484848
NA pHCM1 repeat_unit42056 19 + 0.315789
NA pHCM1 misc_feature170664 675 - 0.635556
NA pHCM1 repeat_region23460 8 - 1
NA pHCM1 repeat_unit43057 19 - 0.315789
NA pHCM1 RBS18387 5 - 0.8
NA pHCM1 misc_feature7088 93 - 0.473118
NA pHCM1 misc_feature179282 93 + 0.451613
NA pHCM1 misc_feature38194 21 + 0.380952
NA pHCM1 RBS137390 7 - 0.571429
NA pHCM1 misc_feature210082 474 + 0.521097
NA pHCM1 RBS155772 4 - 0.5
NA pHCM1 RBS115732 4 + 0.75
NA pHCM1 repeat_unit29591 17 + 0.470588
NA pHCM1 RBS102322 4 + 0.75
NA pHCM1 RBS47532 4 + 0.75
NA pHCM1 repeat_unit54740 54 + 0.555556
NA pHCM1 repeat_unit43151 19 - 0.315789
NA pHCM1 RBS88308 4 + 0.75
NA pHCM1 RBS33564 4 - 0.75
NA pHCM1 misc_feature2472 24 - 0.625
NA pHCM1 repeat_unit160655 14 - 0.5
NA pHCM1 repeat_unit160446 15 - 0.533333
NA pHCM1 misc_feature188461 33 + 0.424242
NA pHCM1 misc_feature157227 2412 - 0.631426
NA pHCM1 repeat_unit43624 21 + 0.47619
NA pHCM1 repeat_unit183224 1315 - 0.439544
NA pHCM1 RBS130750 5 + 0.4
NA pHCM1 repeat_unit176753 13 + 0.307692
NA pHCM1 misc_feature107404 213 + 0.431925
NA pHCM1 misc_feature206293 24 + 0.541667
NA pHCM1 RBS4577 5 - 0.6
NA pHCM1 RBS94993 4 + 0.75
NA pHCM1 RBS215450 6 - 0.5
NA pHCM1 misc_feature160461 195 - 0.661538
NA pHCM1 repeat_unit153546 748 - 0.537433
NA pHCM1 repeat_unit155823 12 + 0.583333
NA pHCM1 repeat_unit43563 19 + 0.315789
NA pHCM1 repeat_unit159639 822 - 0.525547
NA pHCM1 misc_feature116506 1365 + 0.652015
NA pHCM1 RBS18920 5 - 0.6
NA pHCM1 repeat_unit29556 17 + 0.588235
NA pHCM1 RBS98108 4 + 0.75
NA pHCM1 misc_feature108300 129 + 0.51938
NA pHCM1 RBS157087 4 - 0.75
NA pHCM1 RBS214504 4 - 0.75
NA pHCM1 repeat_unit175343 12 + 0.583333
NA pHCM1 repeat_unit108520 20 - 0.45
NA pHCM1 RBS181223 4 - 0.75
NA pHCM1 RBS51238 4 + 0.75
NA pHCM1 misc_feature129311 24 + 0.458333
NA pHCM1 repeat_unit118817 1155 - 0.577489
NA pHCM1 repeat_unit54578 54 + 0.555556
NA pHCM1 misc_feature121313 699 + 0.622318
NA pHCM1 RBS198755 5 - 0.6
NA pHCM1 RBS8980 5 - 0.6
NA pHCM1 repeat_unit29662 17 + 0.470588
NA pHCM1 misc_feature2284 6 -
NA pHCM1 misc_feature122925 2904 + 0.603306
NA pHCM1 RBS207749 6 + 0.333333
NA pHCM1 misc_feature52634 24 + 0.5
NA pHCM1 RBS115046 5 + 0.4
NA pHCM1 repeat_unit56183 49 + 0.55102
NA pHCM1 repeat_unit163306 820 + 0.52439
NA pHCM1 repeat_unit43799 21 + 0.47619
NA pHCM1 misc_feature166108 42 + 0.666667
NA pHCM1 misc_feature166009 768 + 0.625
NA pHCM1 RBS21650 7 + 0.571429
NA pHCM1 misc_feature161992 777 + 0.499357
NA pHCM1 misc_feature8121 93 - 0.537634
NA pHCM1 repeat_unit56232 52 + 0.538462
NA pHCM1 RBS175392 4 + 0.75
NA pHCM1 repeat_unit43953 19 + 0.368421
NA pHCM1 misc_feature78485 24 + 0.583333
NA pHCM1 RBS190861 4 + 0.75
NA pHCM1 misc_feature217632 60 - 0.45
NA pHCM1 misc_feature177199 6 -
NA pHCM1 repeat_unit108797 13 + 0.384615
NA pHCM1 repeat_unit2573 13 - 0.384615
NA pHCM1 RBS217734 6 - 0.5
NA pHCM1 repeat_unit106385 748 + 0.534759
NA pHCM1 repeat_region130852 8 + 1
NA pHCM1 repeat_unit43997 19 + 0.263158
NA pHCM1 misc_feature116209 195 + 0.635897
NA pHCM1 RBS4004 4 + 0.5
NA pHCM1 misc_feature171996 1377 - 0.657226
NA pHCM1 repeat_region216982 8 - 1
NA pHCM1 misc_feature180219 237 - 0.443038
NA pHCM1 RBS208843 5 + 0.8
NA pHCM1 RBS117896 8 + 0.5
NA pHCM1 RBS115428 5 + 0.6
NA pHCM1 repeat_unit28350 17 - 0.411765
NA pHCM1 repeat_unit43711 21 + 0.47619
NA pHCM1 repeat_unit29796 17 + 0.529412
NA pHCM1 misc_feature114849 108 - 0.62963
NA pHCM1 repeat_unit54794 54 + 0.537037
NA pHCM1 repeat_unit153546 13 - 0.307692
NA pHCM1 misc_feature50478 24 + 0.5
NA pHCM1 repeat_unit55807 54 + 0.611111
NA pHCM1 repeat_unit144285 15 - 0.333333
NA pHCM1 RBS171963 8 - 0.5
NA pHCM1 RBS63313 4 + 0.75
NA pHCM1 repeat_unit168511 15 + 0.533333
NA pHCM1 RBS116194 5 + 0.4
NA pHCM1 RBS11488 6 - 0.333333
NA pHCM1 repeat_unit118817 123 + 0.471545
NA pHCM1 repeat_unit142985 15 + 0.333333
NA pHCM1 repeat_unit108746 20 - 0.5
NA pHCM1 misc_feature166864 795 + 0.562264
NA pHCM1 RBS19759 5 + 0.6
NA pHCM1 misc_feature2697 888 - 0.529279
NA pHCM1 misc_feature173244 33 - 0.666667
NA pHCM1 repeat_unit43755 21 + 0.47619
NA pHCM1 RBS21526 5 + 0.6
NA pHCM1 misc_feature108887 24 + 0.625
NA pHCM1 RBS86876 4 + 0.75
NA pHCM1 repeat_unit20616 36 - 0.277778
NA pHCM1 misc_feature25910 24 - 0.541667
NA pHCM1 repeat_region192497 8 - 1
NA pHCM1 misc_feature82041 33 - 0.515152
NA pHCM1 RBS166852 5 + 0.4
NA pHCM1 repeat_unit177488 13 - 0.384615
NA pHCM1 repeat_unit18961 37 + 0.351351
NA pHCM1 repeat_unit56073 54 + 0.537037
NA pHCM1 misc_feature174920 69 + 0.608696
NA pHCM1 misc_feature87194 24 + 0.458333
NA pHCM1 RBS174461 5 - 0.6
NA pHCM1 repeat_region194320 15 - 0.666667
NA pHCM1 repeat_unit163306 14 + 0.5
NA pHCM1 RBS138950 4 - 0.75
NA pHCM1 RBS93438 4 + 0.75
NA pHCM1 misc_feature116221 90 + 0.622222
NA pHCM1 repeat_unit56336 52 + 0.557692
NA pHCM1 repeat_unit164112 14 - 0.5
NA pHCM1 misc_feature106475 24 + 0.625
NA pHCM1 RBS125965 4 + 0.75
NA pHCM1 misc_feature138387 39 - 0.512821
NA pHCM1 RBS40313 4 - 0.75
NA pHCM1 repeat_unit55863 49 + 0.571429
NA pHCM1 repeat_unit201039 65 + 0.415385
NA pHCM1 misc_feature137580 57 - 0.578947
NA pHCM1 RBS5753 4 - 0.5
NA pHCM1 repeat_unit29729 17 + 0.470588
NA pHCM1 RBS161418 4 - 0.75
NA pHCM1 misc_feature178910 51 - 0.509804
NA pHCM1 repeat_unit43538 21 + 0.52381
NA pHCM1 RBS202633 6 + 0.333333
NA pHCM1 RBS180906 5 - 0.4
NA pHCM1 repeat_unit154281 13 - 0.384615
NA pHCM1 RBS211832 5 - 0.6
NA pHCM1 RBS190731 6 - 0.5
NA pHCM1 RBS103291 5 + 0.6
NA pHCM1 RBS216718 5 - 0.4
NA pHCM1 misc_feature173472 195 - 0.630769
NA pHCM1 misc_feature42127 34980 + 0.431161
NA pHCM1 repeat_unit28371 17 - 0.647059
NA pHCM1 RBS4836 5 - 0.4
NA pHCM1 RBS139159 4 + 0.75
NA pHCM1 repeat_unit54632 54 + 0.555556
NA pHCM1 repeat_unit56019 54 + 0.592593
NA pHCM1 RBS6334 4 - 0.75
NA pHCM1 repeat_unit155823 1317 + 0.479879
NA pHCM1 repeat_unit1871 13 + 0.307692
NA pHCM1 RBS212230 7 - 0.571429
NA pHCM1 repeat_unit108465 20 - 0.45
NA pHCM1 misc_feature60045 33 - 0.363636
NA pHCM1 RBS133555 5 + 0.4
NA pHCM1 RBS39318 4 - 0.75
NA pHCM1 misc_feature122386 27 + 0.592593
NA pHCM1 repeat_unit107518 20 + 0.5
NA pHCM1 RBS26232 5 - 0.6
HCM1.170 putative transposase (pseudogene)pHCM1 pseudo125976 940 + 0.474468
HCM1.215 putative resolvase (pseudogene)pHCM1 pseudo161477 252 + 0.543651
HCM1.217 hypothetical proteinpHCM1 pseudo162921 402 + 0.567164
HCM1.220 putative replication initiation protein (pseudogene)pHCM1 pseudo164126 717 + 0.67643
HCM1.226c putative transposase (pseudogene)pHCM1 pseudo169333 1287 - 0.647242
HCM1.240 hypothetical protein (pseudogene)pHCM1 pseudo177511 312 + 0.330128
HCM1.247 putative glutamate permease (pseudogene)pHCM1 pseudo181660 1205 + 0.395021
HCM1.287c hypothetical protein (pseudogene)pHCM1 pseudo216827 397 - 0.496222
tnpA transposase (pseudogene)pHCM1 pseudo160461 2675 - 0.634392