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2024-04-28 02:22:44

Gene list

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COG category: NOT ANALYZED
Organism: Escherichia coli W3110, K-12

Number of genes found: 254

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
agaW chromosome pseudo3280556 402 + 0.58209
alaT tRNA-Ala (UGC)chromosome tRNA3599346 76 - 0.631579
alaU tRNA-Ala (UGC)chromosome tRNA4213383 76 + 0.631579
alaV tRNA-Ala (UGC)chromosome tRNA225500 76 + 0.631579
alaW tRNA-Ala (GGC)chromosome tRNA2523602 76 - 0.605263
alaX tRNA-Ala (GGC)chromosome tRNA2523487 76 - 0.605263
argQ tRNA-Arg (ACG)chromosome tRNA2816440 77 - 0.597403
argU tRNA-Arg (UCU)chromosome tRNA563946 77 + 0.61039
argV tRNA-Arg (ACG)chromosome tRNA2817129 77 - 0.597403
argW tRNA-Arg (CCU)chromosome tRNA2471755 75 + 0.493333
argX tRNA-Arg (CCG)chromosome tRNA3654230 77 - 0.675325
argY tRNA-Arg (ACG)chromosome tRNA2816854 77 - 0.597403
argZ tRNA-Arg (ACG)chromosome tRNA2816715 77 - 0.597403
arpB chromosome pseudo1805292 1416 + 0.40113
arpB chromosome pseudo1804808 474 + 0.360759
arpB chromosome pseudo1804808 1900 + 0.390526
asnT tRNA-Asn (GUU)chromosome tRNA2046686 76 + 0.526316
asnU tRNA-Asn (GUU)chromosome tRNA2061988 76 + 0.526316
asnV tRNA-Asn (GUU)chromosome tRNA2064397 76 + 0.526316
asnW tRNA-Asn (GUU)chromosome tRNA2060164 76 - 0.526316
aspT tRNA-Asp (GUC)chromosome tRNA3689733 77 - 0.636364
aspU tRNA-Asp (GUC)chromosome tRNA228928 77 + 0.636364
aspV tRNA-Asp (GUC)chromosome tRNA236931 77 + 0.636364
csrB regulatory sRNAchromosome misc_RNA2922812 360 - 0.511111
csrC regulatory sRNAchromosome misc_RNA3585401 245 - 0.485714
cybC chromosome pseudo4464233 303 + 0.50165
cysT tRNA-Cys (GCA)chromosome tRNA1994051 74 - 0.567568
dcuC anaerobic C4-dicarboxylate transportchromosome misc_feature653806 2585 - 0.519536
dicF DicF antisense RNAchromosome misc_RNA1651096 53 + 0.54717
dsrA regulatory antisense RNAchromosome misc_RNA2027364 87 - 0.436782
ffs 4.5S RNAchromosome misc_RNA475672 114 + 0.640351
fhiA chromosome pseudo248358 1713 - 0.580269
gadY small RNAchromosome misc_RNA3975447 105 - 0.495238
gapC chromosome pseudo1491427 252 - 0.460317
gapC chromosome pseudo1491675 753 - 0.487384
gapC chromosome pseudo1491427 1001 - 0.480519
gatA galactitol-specific enzyme IIA component of PTSchromosome misc_feature2176732 1652 - 0.502421
gatR chromosome pseudo2171830 447 - 0.438479
gatR chromosome pseudo2173532 339 - 0.495575
gatR chromosome pseudo2171830 2041 - 0.508574
gcvB regulatory sRNAchromosome misc_RNA2941352 205 + 0.429268
glnU tRNA-Gln (UUG)chromosome tRNA697287 75 - 0.573333
glnV tRNA-Gln (CUG)chromosome tRNA696964 75 - 0.586667
glnW tRNA-Gln (UUG)chromosome tRNA697178 75 - 0.573333
glnX tRNA-Gln (CUG)chromosome tRNA696852 75 - 0.586667
gltT tRNA-Glu (UUC)chromosome tRNA3468234 76 - 0.644737
gltU tRNA-Glu (UUC)chromosome tRNA3693171 76 - 0.644737
gltV tRNA-Glu (UUC)chromosome tRNA3426832 76 - 0.644737
gltW tRNA-Glu (UUC)chromosome tRNA2728025 76 - 0.644737
glyT tRNA-Gly (UCC)chromosome tRNA3460934 75 - 0.573333
glyU tRNA-Gly (CCC)chromosome tRNA2997640 74 - 0.567568
glyV tRNA-Gly (GCC)chromosome tRNA4397040 76 + 0.605263
glyW tRNA-Gly (GCC)chromosome tRNA1994179 76 - 0.605263
glyX tRNA-Gly (GCC)chromosome tRNA4397152 76 + 0.605263
glyY tRNA-Gly (GCC)chromosome tRNA4397263 76 + 0.605263
hisR tRNA-His (GUG)chromosome tRNA3654096 77 - 0.532468
icdC chromosome pseudo1213002 153 + 0.457516
ileT tRNA-Ile (GAU)chromosome tRNA3599464 77 - 0.571429
ileU tRNA-Ile (GAU)chromosome tRNA4213264 77 + 0.571429
ileV tRNA-Ile (GAU)chromosome tRNA225381 77 + 0.571429
ileX tRNA-Ile (CAU)chromosome tRNA3214254 76 + 0.592105
ileY tRNA-Ile (CAU)chromosome tRNA2784418 76 - 0.565789
ilvG chromosome pseudo3685138 984 - 0.553862
ilvG chromosome pseudo3684477 582 - 0.524055
insB chromosome pseudo4523401 294 + 0.561224
insB chromosome pseudo4523695 210 + 0.47619
insB chromosome pseudo4523401 504 + 0.525794
isrA small RNAchromosome misc_RNA1407366 158 - 0.449367
isrB small RNAchromosome misc_RNA1989976 160 - 0.43125
isrC small RNAchromosome misc_RNA2073452 204 + 0.426471
leuP tRNA-Leu (CAG)chromosome tRNA4610880 87 - 0.597701
leuQ tRNA-Leu (CAG)chromosome tRNA4610995 87 - 0.609195
leuT tRNA-Leu (CAG)chromosome tRNA3653989 87 - 0.609195
leuU tRNA-Leu (GAG)chromosome tRNA3321927 87 - 0.574713
leuV tRNA-Leu (CAG)chromosome tRNA4610759 87 - 0.609195
leuW tRNA-Leu (UAG)chromosome tRNA697385 85 - 0.6
leuX tRNA-Leu (CAA)chromosome tRNA4501085 85 + 0.541176
leuZ tRNA-Leu (UAA)chromosome tRNA1993952 87 - 0.597701
lomR chromosome pseudo1430528 171 + 0.578947
lomR chromosome pseudo1429172 1527 + 0.546169
lysQ tRNA-Lys (UUU)chromosome tRNA781999 76 + 0.5
lysT tRNA-Lys (UUU)chromosome tRNA780976 76 + 0.5
lysV tRNA-Lys (UUU)chromosome tRNA2526699 76 + 0.5
lysW tRNA-Lys (UUU)chromosome tRNA781265 76 + 0.5
lysY tRNA-Lys (UUU)chromosome tRNA781569 76 + 0.5
lysZ tRNA-Lys (UUU)chromosome tRNA781791 76 + 0.5
mbhA chromosome pseudo250072 756 + 0.527778
metT tRNA-Met (CAU)chromosome tRNA697479 77 - 0.519481
metU tRNA-Met (CAU)chromosome tRNA697086 77 - 0.519481
metV tRNA-initiator Met (CAU)chromosome tRNA2946263 77 + 0.662338
metW tRNA-initiator Met (CAU)chromosome tRNA2946153 77 + 0.662338
metY tRNA-initiator Met (CAU)chromosome tRNA3318068 77 - 0.649351
metZ tRNA-initiator Met (CAU)chromosome tRNA2946043 77 + 0.662338
micC regulatory sRNAchromosome misc_RNA1438835 108 + 0.388889
micF regulatory sRNAchromosome misc_RNA2316418 93 + 0.354839
molR chromosome pseudo2199808 825 + 0.458182
molR chromosome pseudo2200744 1938 + 0.506708
molR chromosome pseudo2199808 3796 + 0.502898
molR chromosome pseudo2202656 948 + 0.544304
oriC chromosome rep_origin3710706 232 - 0.409483
oxyS regulatory sRNAchromosome misc_RNA3478287 110 + 0.490909
pbl chromosome pseudo2992697 375 + 0.333333
pheU tRNA-Phe (GAA)chromosome tRNA4367229 76 - 0.592105
pheV tRNA-Phe (GAA)chromosome tRNA3109022 76 + 0.592105
phnE chromosome pseudo4327121 369 - 0.601626
pinH chromosome pseudo2781721 144 - 0.451389
proK tRNA-Pro (CGG)chromosome tRNA3931723 77 + 0.61039
proL tRNA-Pro (GGG)chromosome tRNA2289545 77 + 0.662338
proM tRNA-Pro (UGG)chromosome tRNA3653870 77 - 0.623377
rcsC hybrid sensory kinase in two-component regulatory system with RcsB and YojNchromosome misc_feature2320361 4138 - 0.516675
rdlA regulatory antisense RNAchromosome misc_RNA1270900 67 + 0.522388
rdlB regulatory antisense sRNAchromosome misc_RNA1271435 66 + 0.5
rdlC regulatory antisense sRNAchromosome misc_RNA1271970 68 + 0.485294
rdlD regulatory antisense sRNAchromosome misc_RNA3940216 64 - 0.546875
rnpB RNase Pchromosome misc_RNA3270071 377 - 0.618037
rprA regulatory sRNAchromosome misc_RNA1772086 105 + 0.390476
rrfA 5S rRNAchromosome rRNA3596045 120 - 0.625
rrfB 5S rRNAchromosome rRNA3464925 120 - 0.633333
rrfC 5S rRNAchromosome rRNA3689862 120 - 0.641667
rrfD 5S rRNAchromosome rRNA3423523 120 - 0.641667
rrfE 5S rRNAchromosome rRNA4216630 120 + 0.633333
rrfF 5S rRNAchromosome rRNA3423278 120 - 0.616667
rrfG 5S rRNAchromosome rRNA2724725 120 - 0.641667
rrfH 5S rRNAchromosome rRNA228756 120 + 0.641667
rrlA 23S rRNAchromosome rRNA3596258 2905 - 0.53253
rrlB 23S rRNAchromosome rRNA3465137 2904 - 0.534091
rrlC 23S rRNAchromosome rRNA3690074 2904 - 0.533058
rrlD 23S rRNAchromosome rRNA3423735 2904 - 0.533402
rrlE 23S rRNAchromosome rRNA4213633 2904 + 0.533747
rrlG 23S rRNAchromosome rRNA2724937 2904 - 0.534091
rrlH 23S rRNAchromosome rRNA225759 2904 + 0.532369
rrsA 16S rRNAchromosome rRNA3599609 1542 - 0.54345
rrsB 16S rRNAchromosome rRNA3468481 1542 - 0.544099
rrsC 16S rRNAchromosome rRNA3693332 1542 - 0.544099
rrsD 16S rRNAchromosome rRNA3426993 1542 - 0.544099
rrsE 16S rRNAchromosome rRNA4211654 1542 + 0.545396
rrsG 16S rRNAchromosome rRNA2728272 1542 - 0.546044
rrsH 16S rRNAchromosome rRNA223771 1542 + 0.54345
rttR regulatory sRNAchromosome misc_RNA1288643 171 - 0.578947
rybA small RNAchromosome misc_RNA853374 89 - 0.47191
rybB small RNAchromosome misc_RNA888398 79 - 0.455696
rydB regulatory sRNAchromosome misc_RNA1766427 68 - 0.529412
ryeA small RNAchromosome misc_RNA1924780 249 + 0.457831
ryeB small RNAchromosome misc_RNA1924878 121 - 0.46281
ryeC small RNAchromosome misc_RNA2155412 149 + 0.463087
ryeD small RNAchromosome misc_RNA2155747 143 + 0.482517
ryeE small RNAchromosome misc_RNA2169249 86 + 0.44186
ryfA small RNAchromosome misc_RNA2652511 304 + 0.526316
rygA small RNAchromosome misc_RNA2974758 88 - 0.5
rygB small RNAchromosome misc_RNA2974966 76 - 0.513158
rygC small RNAchromosome misc_RNA3055471 151 + 0.410596
rygD small RNAchromosome misc_RNA3193407 150 - 0.42
ryhA small RNAchromosome misc_RNA3350432 108 + 0.537037
ryhB regulatory sRNAchromosome misc_RNA4059399 94 + 0.510638
ryiA regulatory sRNAchromosome misc_RNA3650078 172 - 0.476744
ryjA small RNAchromosome misc_RNA4281517 140 - 0.521429
selC tRNA-Sec (UCA)chromosome tRNA3804099 95 - 0.642105
serT tRNA-Ser (UGA)chromosome tRNA1032047 88 - 0.602273
serU tRNA-Ser (CGA)chromosome tRNA2045605 90 - 0.633333
serV tRNA-Ser (GCU)chromosome tRNA2817209 93 - 0.645161
serW tRNA-Ser (GGA)chromosome tRNA926306 88 - 0.613636
serX tRNA-Ser (GGA)chromosome tRNA1097806 88 - 0.613636
sgrS small antisense RNAchromosome misc_RNA77367 227 + 0.475771
sokB regulatory antisense sRNAchromosome misc_RNA1493833 53 + 0.528302
sokC regulatory antisense RNAchromosome misc_RNA16952 55 + 0.472727
spf Spot 42 RNAchromosome misc_RNA3586674 109 - 0.422018
sraB small RNAchromosome misc_RNA1148166 169 + 0.384615
sraD small RNAchromosome misc_RNA2813457 75 + 0.426667
sraF small RNAchromosome misc_RNA3237030 188 + 0.494681
sraG small RNAchromosome misc_RNA3311080 174 + 0.494253
sroF small RNAchromosome misc_RNA2689848 149 - 0.510067
ssrA 10Sa RNA SsrAchromosome misc_RNA2754249 363 + 0.528926
ssrS 6S regulatory RNAchromosome misc_RNA3054639 183 + 0.551913
stfE chromosome pseudo1210696 537 - 0.454376
tfaD chromosome pseudo580757 564 + 0.489362
tfaS chromosome pseudo2476249 303 + 0.544554
tff small RNAchromosome misc_RNA189712 136 + 0.507353
thrT tRNA-Thr (GGU)chromosome tRNA3460852 76 - 0.539474
thrU tRNA-Thr (UGU)chromosome tRNA3461218 76 - 0.513158
thrV tRNA-Thr (GGU)chromosome tRNA3423435 76 - 0.565789
thrW tRNA-Thr (CGU)chromosome tRNA262095 76 + 0.513158
tnaB tryptophan transporter of low affinitychromosome misc_feature3746534 2447 - 0.497344
trpT tRNA-Trp (CCA)chromosome tRNA3689649 76 - 0.592105
tyrT tRNA-Tyr (GUA)chromosome tRNA1289115 85 - 0.588235
tyrU tRNA-Tyr (GUA)chromosome tRNA3461125 85 - 0.588235
tyrV tRNA-Tyr (GUA)chromosome tRNA1288821 85 - 0.588235
valT tRNA-Val (UAC)chromosome tRNA781187 76 + 0.618421
valU tRNA-Val (UAC)chromosome tRNA2526377 76 + 0.618421
valV tRNA-Val (GAC)chromosome tRNA1748149 77 + 0.532468
valW tRNA-Val (GAC)chromosome tRNA1748230 77 + 0.61039
valX tRNA-Val (UAC)chromosome tRNA2526497 76 + 0.618421
valY tRNA-Val (UAC)chromosome tRNA2526619 76 + 0.618421
valZ tRNA-Val (UAC)chromosome tRNA781490 76 + 0.618421
wbbL chromosome pseudo2103533 282 - 0.37234
yaiX chromosome pseudo380068 216 - 0.462963
ybcD chromosome pseudo565674 237 + 0.50211
ybfL chromosome pseudo737322 1062 + 0.419962
ycdN chromosome pseudo1081876 732 + 0.547814
ycdN chromosome pseudo1081778 830 + 0.542169
ycgH chromosome pseudo1222378 1422 + 0.481013
ycgH chromosome pseudo1222783 1017 + 0.508358
ycgH chromosome pseudo1222378 321 + 0.417445
ychG chromosome pseudo1296003 591 - 0.532995
ychG chromosome pseudo1296545 231 - 0.645022
ychG chromosome pseudo1296003 773 - 0.560155
yciX chromosome pseudo1336874 129 + 0.496124
yciX chromosome pseudo1336984 189 + 0.455026
yciX chromosome pseudo1336874 299 + 0.474916
ydbA chromosome pseudo1467106 2559 + 0.500977
ydbA chromosome pseudo1472404 3324 + 0.496691
ydbA chromosome pseudo1467106 8622 + 0.495361
yedN chromosome pseudo2013485 522 - 0.354406
yedN chromosome pseudo2013686 321 - 0.373832
yedN chromosome pseudo2013485 192 - 0.317708
yedS chromosome pseudo2036188 486 + 0.465021
yedS chromosome pseudo2036683 210 + 0.452381
yedS chromosome pseudo2036976 405 + 0.454321
yedS chromosome pseudo2036188 1193 + 0.456832
yeeL chromosome pseudo2054761 705 - 0.380142
yeeL chromosome pseudo2054413 1053 - 0.387464
yeeP chromosome pseudo2072923 426 + 0.600939
yegZ chromosome pseudo2169739 219 - 0.493151
yfaS chromosome pseudo2334969 4104 - 0.537524
yfaS chromosome pseudo2334468 4605 - 0.537242
yfaS chromosome pseudo2334468 486 - 0.532922
ygaY chromosome pseudo2807268 882 + 0.540816
ygeN chromosome pseudo2994404 273 - 0.296703
yghY chromosome pseudo3145922 354 - 0.525424
yhcE chromosome pseudo3365040 1745 + 0.507736
yhcE chromosome pseudo3365040 480 + 0.454167
yhcE chromosome pseudo3366536 249 + 0.445783
yhiK chromosome pseudo4007171 393 + 0.356234
yifN chromosome pseudo3676221 219 + 0.438356
yjgX chromosome pseudo4504357 243 - 0.465021
yjgX chromosome pseudo4505112 360 - 0.497222
yjgX chromosome pseudo4504357 1115 - 0.485202
yjhD chromosome pseudo4511306 231 - 0.47619
yjhE chromosome pseudo4511541 249 + 0.485944
yjhW chromosome pseudo4514231 243 + 0.489712
yjiP chromosome pseudo4573678 312 + 0.474359
ylbE chromosome pseudo547581 261 + 0.56705
ylbE chromosome pseudo547838 1002 + 0.571856
ylbE chromosome pseudo547581 1259 + 0.571088
ymdE chromosome pseudo1095966 303 + 0.412541
yncK chromosome pseudo1504857 168 - 0.529762
yncK chromosome pseudo1504857 507 - 0.4714
yncK chromosome pseudo1505076 288 - 0.440972
ynfP chromosome pseudo1654442 111 - 0.423423
yoeA chromosome pseudo2070772 393 + 0.458015
ypaA chromosome pseudo2362486 186 + 0.505376
ypjM chromosome pseudo2771632 183 - 0.568306
yqaC chromosome pseudo2786298 597 + 0.370184
yrhC chromosome pseudo4016283 246 - 0.341463
ysdC chromosome pseudo3779066 177 + 0.542373