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2024-04-27 13:20:37

Gene list

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COG category: NOT ANALYZED
Organism: Lactobacillus plantarum WCFS1, WCFS1

Number of genes found: 127

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus plantarum WCFS1, WCFS1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA lp_tRNA40 Ser-tRNAchromosome tRNA1876412 88 + 0.568182
NA lp_tRNA34 Leu-tRNAchromosome tRNA1175238 88 + 0.613636
NA lp_tRNA61 Val-tRNAchromosome tRNA2015699 76 - 0.552632
NA lp_tRNA27 Val-tRNAchromosome tRNA1174562 73 + 0.561644
NA lp_tRNA58 Lys-tRNAchromosome tRNA2015298 73 - 0.506849
NA lp_rRNA01 16S r-RNAchromosome rRNA502863 1571 + 0.511776
NA lp_tRNA52 Met-tRNAchromosome tRNA2014674 74 - 0.662162
NA lp_tRNA25 Ser-tRNAchromosome tRNA1174374 90 + 0.5
NA lp_rRNA14 23S r-RNAchromosome rRNA2941804 2920 - 0.50274
NA lp_tRNA60 Lys-tRNAchromosome tRNA2015625 73 - 0.506849
NA lp_tRNA54 Arg-tRNAchromosome tRNA2014858 74 - 0.5
NA lp_tRNA37 Gly-tRNAchromosome tRNA1271644 71 + 0.56338
NA lp_tRNA48 Asp-tRNAchromosome tRNA2014298 75 - 0.586667
NA lp_tRNA32 Gln-tRNAchromosome tRNA1175018 72 + 0.5
NA lp_tRNA42 Met-tRNAchromosome tRNA2013765 74 - 0.621622
NA lp_tRNA31 His-tRNAchromosome tRNA1174938 73 + 0.643836
NA lp_tRNA01 Lys-tRNAchromosome tRNA37371 76 - 0.592105
NA lp_rRNA10 5S r-RNAchromosome rRNA2498679 119 - 0.546219
NA lp_tRNA44 Ser-tRNAchromosome tRNA2013940 88 - 0.579545
NA lp_rRNA05 23S r-RNAchromosome rRNA1171170 2920 + 0.502055
NA lp_tRNA53 Pro-tRNAchromosome tRNA2014779 74 - 0.567568
NA lp_rRNA11 23S r-RNAchromosome rRNA2498868 2920 - 0.50274
NA lp_tRNA09 Gly-tRNAchromosome tRNA591410 71 - 0.549296
NA lp_rRNA12 16S r-RNAchromosome rRNA2501993 1571 - 0.512412
NA lp_rRNA06 5S r-RNAchromosome rRNA1174160 119 + 0.554622
NA lp_tRNA06 Tyr-tRNAchromosome tRNA511258 83 + 0.60241
NA lp_rRNA09 16S r-RNAchromosome rRNA2019093 1571 - 0.511776
NA lp_tRNA21 Arg-tRNAchromosome tRNA1061664 73 + 0.616438
NA lp_rRNA07 5S r-RNAchromosome rRNA2015779 119 - 0.554622
NA lp_tRNA65 Met-tRNAchromosome tRNA2199699 74 + 0.540541
NA lp_tRNA68 Gln-tRNAchromosome tRNA2204512 73 + 0.479452
NA lp_tRNA55 Leu-tRNAchromosome tRNA2014942 86 - 0.593023
NA lp_tRNA07 Gln-tRNAchromosome tRNA511350 72 + 0.555556
NA lp_tRNA26 Glu-tRNAchromosome tRNA1174485 73 + 0.534247
NA lp_tRNA14 Leu-tRNAchromosome tRNA934819 82 + 0.597561
NA lp_tRNA22 Ile-tRNAchromosome tRNA1170820 75 + 0.546667
NA lp_tRNA56 Gly-tRNAchromosome tRNA2015043 72 - 0.583333
NA lp_tRNA15 Thr-tRNAchromosome tRNA934904 73 + 0.534247
NA lp_tRNA33 Cys-tRNAchromosome tRNA1175112 71 + 0.535211
NA lp_tRNA19 Pro-tRNAchromosome tRNA935258 74 + 0.567568
NA lp_tRNA46 Gly-tRNAchromosome tRNA2014113 71 - 0.521127
NA lp_rRNA02 23S r-RNAchromosome rRNA504868 2920 + 0.502397
NA lp_tRNA62 Trp-tRNAchromosome tRNA2186916 72 - 0.444444
NA lp_tRNA10 Ile-tRNAchromosome tRNA593365 86 - 0.488372
NA lp_tRNA49 Met-tRNAchromosome tRNA2014376 74 - 0.621622
NA lp_rRNA04 16S r-RNAchromosome rRNA1169165 1571 + 0.512412
NA lp_tRNA20 Pro-tRNAchromosome tRNA935382 74 + 0.554054
NA lp_tRNA41 Asp-tRNAchromosome tRNA2013685 78 - 0.576923
NA lp_tRNA17 Leu-tRNAchromosome tRNA935081 86 + 0.593023
NA lp_tRNA18 Arg-tRNAchromosome tRNA935177 74 + 0.5
NA lp_tRNA08 Leu-tRNAchromosome tRNA531682 88 + 0.556818
NA lp_tRNA38 Asp-tRNAchromosome tRNA1271771 78 + 0.576923
NA lp_rRNA15 16S r-RNAchromosome rRNA2944929 1571 - 0.511776
NA lp_tRNA69 Thr-tRNAchromosome tRNA2498504 73 - 0.506849
NA lp_tRNA12 Arg-tRNAchromosome tRNA722170 75 - 0.573333
NA lp_tRNA64 Ile-tRNAchromosome tRNA2199001 86 + 0.488372
NA lp_tRNA23 Ala-tRNAchromosome tRNA1170936 73 + 0.589041
NA lp_rRNA13 5S r-RNAchromosome rRNA2941615 119 - 0.546219
NA lp_tRNA30 Trp-tRNAchromosome tRNA1174859 74 + 0.472973
NA lp_rRNA03 5S r-RNAchromosome rRNA507858 119 + 0.554622
NA lp_tRNA39 Arg-tRNAchromosome tRNA1448543 74 - 0.527027
NA lp_tRNA50 Ser-tRNAchromosome tRNA2014456 90 - 0.533333
NA lp_tRNA13 Asn-tRNAchromosome tRNA774992 72 + 0.541667
NA lp_tRNA05 Thr-tRNAchromosome tRNA508099 73 + 0.561644
NA lp_tRNA43 Glu-tRNAchromosome tRNA2013848 73 - 0.534247
NA lp_tRNA59 Val-tRNAchromosome tRNA2015372 76 - 0.552632
NA lp_rRNA08 23S r-RNAchromosome rRNA2015968 2920 - 0.502397
NA lp_tRNA51 Met-tRNAchromosome tRNA2014585 74 - 0.554054
NA lp_tRNA45 Ile-tRNAchromosome tRNA2014032 75 - 0.546667
NA lp_tRNA28 Phe-tRNAchromosome tRNA1174690 73 + 0.60274
NA lp_tRNA57 Thr-tRNAchromosome tRNA2015131 73 - 0.561644
NA lp_tRNA03 Ala-tRNAchromosome tRNA504634 73 + 0.589041
NA lp_tRNA24 Asn-tRNAchromosome tRNA1174283 73 + 0.547945
NA lp_tRNA47 Phe-tRNAchromosome tRNA2014196 73 - 0.60274
NA lp_tRNA66 Gly-tRNAchromosome tRNA2199778 71 + 0.549296
NA lp_tRNA36 Leu-tRNAchromosome tRNA1252780 84 - 0.595238
NA lp_tRNA67 Glu-tRNAchromosome tRNA2204049 73 - 0.60274
NA lp_tRNA63 Asn-tRNAchromosome tRNA2187057 73 - 0.547945
NA lp_tRNA04 Asn-tRNAchromosome tRNA507981 73 + 0.547945
NA lp_tRNA11 Asn-tRNAchromosome tRNA606324 73 + 0.547945
NA lp_tRNA16 Gly-tRNAchromosome tRNA935001 72 + 0.583333
NA lp_tRNA70 Ala-tRNAchromosome tRNA3039279 73 + 0.616438
NA lp_tRNA02 Ile-tRNAchromosome tRNA504518 75 + 0.546667
NA lp_tRNA35 His-tRNAchromosome tRNA1252319 73 - 0.643836
NA lp_tRNA29 Tyr-tRNAchromosome tRNA1174768 83 + 0.60241
acm3-C lp_3154 muramidase, C-terminal fragmentchromosome pseudo2818829 465 + 0.44086
acm3-M lp_3153 muramidase, middle fragmentchromosome pseudo2818340 453 + 0.410596
acm3-N lp_3151 muramidase, N-terminal fragmentchromosome pseudo2817458 807 + 0.399009
cpd-C lp_3400 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor, C-terminal fragmentchromosome pseudo3014947 1551 + 0.485493
cpd-N lp_3399 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor, N-terminal fragmentchromosome pseudo3014877 96 + 0.302083
glmS2 lp_3335 glutamine-fructose-6-phosphate transaminase (isomerizing), C-terminal fragmentchromosome pseudo2969288 1095 + 0.474886
guaB lp_3194 IMP dehydrogenase (fragment)chromosome pseudo2846965 1152 - 0.483507
hsdS2 lp_0942 type Ic restriction-modification system, HsdS subunit, fragmentchromosome pseudo874693 387 - 0.335917
hsdS3 lp_0943 type Ic restriction-modification system, HsdS subunit, fragmentchromosome pseudo875125 687 + 0.330422
lmrB-C lp_3369 multidrug transport protein, C-terminal fragmentchromosome pseudo2993887 321 + 0.476636
lmrB-N lp_3368 multidrug transport protein, N-terminal fragmentchromosome pseudo2992762 1116 + 0.476703
lp_0106 lp_0106 unknownchromosome pseudo95063 792 + 0.465909
lp_0107 lp_0107 unknownchromosome pseudo95893 432 + 0.472222
lp_0209 lp_0209 adherence protein, C-terminal fragmentchromosome pseudo192715 873 - 0.485682
lp_0686 lp_0686 prophage Lp1 protein 63chromosome pseudo629832 267 + 0.310861
lp_0687 lp_0687 prophage Lp1 protein 64chromosome pseudo630155 1197 + 0.338346
lp_0830 lp_0830 transport protein, N-terminal fragmentchromosome pseudo770044 807 + 0.463445
lp_0831 lp_0831 transport protein, C-terminal fragmentchromosome pseudo770863 381 + 0.451444
lp_2064 lp_2064 DNA alkylation repair enzyme, fragmentchromosome pseudo1864491 162 - 0.493827
lp_2150 lp_2150 L-lactate dehydrogenase (putative)chromosome pseudo1941870 1065 - 0.461972
lp_2857 lp_2857 ABC transporter, ATP-binding protein, C-terminal fragmentchromosome pseudo2549106 405 - 0.525926
lp_2858 lp_2858 ABC transporter, ATP-binding protein, N-terminal fragmentchromosome pseudo2549497 237 - 0.50211
lp_2896 lp_2896 transport protein, N-terminal fragmentchromosome pseudo2575130 333 + 0.462462
lp_2897 lp_2897 transport protein, C-terminal fragmentchromosome pseudo2575493 1032 + 0.48062
lp_2960 lp_2960 acyltransferase (putative)chromosome pseudo2635316 702 + 0.445869
lp_2979 lp_2979 acetoin utilization protein, C-terminal fragment (putative)chromosome pseudo2653009 408 - 0.458333
lp_2980 lp_2980 acetoin utilization protein, N-terminal fragment (putative)chromosome pseudo2653424 225 - 0.448889
lp_2996 lp_2996 transcription regulator, C-terminal fragmentchromosome pseudo2665208 180 - 0.411111
lp_2997 lp_2997 transcription regulator, N-terminal fragment (putative)chromosome pseudo2665432 117 - 0.401709
lp_3057 lp_3057 unknownchromosome pseudo2718549 270 - 0.485185
lp_3058 lp_3058 secreted protein (putative)chromosome pseudo2718834 375 - 0.426667
lp_3111 lp_3111 acetyltransferase, N-terminally truncated (putative)chromosome pseudo2770523 456 - 0.462719
lp_3143 lp_3143 transcription regulator (putative)chromosome pseudo2813402 261 - 0.425287
lp_3144 lp_3144 oxidoreductase, C-terminal fragmentchromosome pseudo2813913 417 - 0.465228
lp_3145 lp_3145 oxidoreductase, N-terminal fragmentchromosome pseudo2814330 543 - 0.480663
lp_3156 lp_3156 oxidoreductase, C-terminal fragmentchromosome pseudo2820192 636 - 0.429245
lp_3157 lp_3157 oxidoreductase, N-terminal fragmentchromosome pseudo2820823 231 - 0.428571
lp_3427 lp_3427 metal-dependent hydrolase (putative), C-terminal fragmentchromosome pseudo3040495 858 - 0.452214
pyrAB2 lp_1784 carbamoyl-phosphate synthase (glutamine-hydrolysing), large chain, truncatedchromosome pseudo1615643 2562 + 0.479703
ribB lp_1436 riboflavin synthase, alpha chain, N-terminally truncatedchromosome pseudo1316026 420 + 0.490476
tkt1-C lp_0491 transketolase, C-terminal fragmentchromosome pseudo439138 918 + 0.381264
tkt1-N lp_0489 transketolase, N-terminal fragmentchromosome pseudo437783 828 + 0.370773