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# Chlamydophila pneumoniae CWL029, CWL029

>gid:14921  CPn0068  CT360 hypothetical protein
MIKKFFIYSLIFSCSFSAPLKGICNEDVSSQSRIEEDPEVLITQLNELIE
TPIEEGKEIRNELQAISDGQKSSEEIEESCGTSDSEGLSEKTDKESSNEY
VLDFFDSMVQRLEGISKMCQSGQVAQIIDCFNREFDIRNRELELKNRELE
LREKDLEFKKSILDWNKEKVSRELAFQREQDIKQTLMLLKK
>gid:15270  CPn0408  CT102 hypothetical protein
MFFNLFSLVFKLSDELALAETIQEPISVHEMFPGSMKLEMFKMLGSLILL
LTIFGFGVWAFKKFVRSRSHGFGGSSQIKILERRSLTPKTSIYLIRVVNK
TLVIAETPEKITLLTEFPPDTDINHLLQENNKQSSSSATSDFLSKAIQKI
QKKQQTNQD
>gid:15629  CPn0751  CT651 hypothetical protein
MFRCILFGIFLLTCFSSGGVLYYLFCSHDFSIGPKEKSRSVWIEEEKEFT
DSVLHHLPSQHQHLHILCFQGFLLQKQQKFSQAEKIFSKVYDEAQDGPFL
FKEEILGSRLINSFFLEKTDVMETILCLLNQRCPNSPYYHLFKALVCYKQ
KLYREVIEQLAYWQEEKTRALAPLLNISIEQLLTDFLLDYISAHSLIEQK
MFPEGRVILNRNINRLLKHECEWNAKTYDRIAILLSRSYFLELVESKSAD
IYFDYYEMVLFYLKKIYILEQCPYAELLPEEELVSLIMEHVFILPKDKLY
PLIQLLEMWQKHYVHPNSSLVVQILVDRFSTHMEGAIRFCEALVSFSGLE
ELHQQIITTFEELLSNKVQQIKTEEAKQCVALLHILDPSISISEKLALSS
DTLQNIVSGDDEQHTKLRNYLDLWEAIQSYDIDRQQLVHHLVYGAKDLWK
KGGNDEKALNLLQLVLRFTSYDIECESVVFLFIKQAYKQALSSHAIARLL
KLEKFISEANIPSIVISEAEKANFLADAEYLFAHEDYDKCYLYSMWLTKV
APSPQSYRLAGLCLMENKRYDEALEFLCMLSPNDSINDYKTQKALAFCQK
HQSKDRAAS
>gid:15697  CPn0818  predicted OMP [leader peptide]
MKRQKRKQSITLIEMMVVITLIGIIGGALAFNMRGSIHKGKVFQSEQNCA
KVYDILMMEYATGGSSLKEIIAHKETVVEEASWCKEGRKLLKDAWGEDLI
VQLNDKGDDLVIFSKRVQSSNKK
>gid:15739  CPn0859  CT718 hypothetical protein
MTTPQSPGSLSQSHLPHPHDPWDTEPTSLPEDPNDKASQELHSLVHLFRK
LSIHLLSEVEKTVQQLKPDLLELALLICEKFLYKKLENPQELALLLSTAL
QRHTTLRSLTPIKVFLHPEDLKTLTDWISTHELPMIKHAEFFPDTSCRRS
GFKIETPNGILRQEISEELDHLLSVLTA
>gid:15892  CPn1004  CT847 hypothetical protein
MSIQPVSNTTTKADKVIPDSTKVISDSITINKQSAFYFCISVMLRLSEST
TEYGKSILAVLEDNTIVQQQRVKELINLPLLKVPDLQKKDGSDDEYKNQN
EIQAYQSSNQQISANRQMIQQELSSAQQRAQANQKSVNSTTIESMQILQA
TSSMLSTLKELTIKANLTNSPSD
>gid:15893  CPn1005  CT848 hypothetical protein
MWIIDPLSAKKPLQAAINVPGTPITGGPNTATADDIIAKFSKDSNPLIVT
VYYVYQSVLVAQDNLSIIAQELQANSSAQTYLNNQEALYQYVSIPKNKLN
DNSSSYLQNIQSDNQAIGASRQAIQNQISSLGNAAQVISSNLNTNNNIIQ
QSLQVGQALIQTFSQIVSLIANI
>gid:15907  CPn1019  CT860 hypothetical protein
MTVSYQSISTPPPEGEFDIFVDGNATEEAVVAAEVQVALPAGEQYAMLRA
TSELCFGILTQSECALTQALPPKEKPLQEEQFLVKNGILMRSTSLPNLKP
GQSQQTSLASHRNPLAQQSTSSNSTGKASTETTSSSFPFFSCKAPEGDSS
VDKTFTVSVQTPKAQEQQEASASQSQAQFHVRSYSSSTIKEHSAKEKVSQ
STKSAETQKHTQTKSDATLSPMSLYSTLHKEVPQALSSTKSQQKDEEHRD
QRQQEGYEQEQEQEEGKKKTPWCTVESLQQTSSSNQVYESYTPIIPDPIV
EFALSESQLSVLAGKRVTNLDVLRICTELMKLMLKSRANDTMTRLEEREL
MEREAHELAASYSRQAKYARWLGIATATLGILGAIAPMVGEISGDSILGF
VQRISGRFKDATAKTFFKGIGKVFTSLSQLTEAASKVHELSESAVRAVAE
YRKEVFRMRQDEVTRTIEEVKDNWKSMDNFLLNILQTEHDAARSLYQ
>gid:15955  CPn1066  hypothetical protein
MSLNKEIGMTVLFYAFLFIFLFLCVILCGLILVQESKSMGLGSSFGVDSG
DSVFGVSTPDILKKVTSWCAVAFCIGCLLLSFSTNLLGKKLDAKEFLLPA
AEESDTQASSESVEADES
>gid:15224  flhA  Flagellar Secretion Protein
MSGKKDGVRGMIFVPLSILVLIFLPLPQILLDFGLCISFALSLLTVCWVF
TLNSSNSAKLFPPFFLYLCLLRLGLNLASTRWIVSSGTASSLIVSLGSFF
SLGSLWAATFACLLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALD
SDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGDAIISCILLLV
NVVSVTCLYYTSGYALEQMWFTVLGDALVSQVPALLTSCAAATLISKIDK
EESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLLWLA
YRKEEPASEDSCIERAFSYVEGACPKEQESQFYQVYRAASEEVFEDLGVR
LPVLTSLRIEERPWLRVFGQNVYLDEMTPEAVLPFLRNIAHEALNAEVVQ
KYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEA
VAVYQNSGDSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELI
NSSYSKSNPVMQENVIRRVDSLLERSVFKDFRAIVTSCETRFEMKKMLDP
HFPDLLVLSHDELPKEIPISFLGIVSDEVLVP
>gid:15740  fliF  Flagellar M-Ring Protein
MFFQNLAKKLTALGISPLGCLLIGGVVSCAILFGRSSNPSLAPTQVKTEK
TSGNWLKLTQMGNPKLIESLTKKEQLEKDLTSFHPIASAKVAIALSTEDD
VMSPLHLSVILTLRKEESLTPSLLFSITDYLCSSLPGLKREHISLSDNLG
NLYIPESITVNSLFIHTLENYLGKIFPKEHFALAYHAKAEKPTLQLTLNE
NYIAHLTKEESEKIVAHTKHYLYQNYDDSYDIVIETLPFARLQNKKSFPA
KVLIGSMILVISLMIVALASFYLARHAYERVSPEPRKIKRGINISKLLEI
IQKESPEKIALILSYLDPKKAEALLNRLPEDLKHQVLKYKL
>gid:15738  fliI  Flagellum-specific ATP Synthase
MNHLNKEKLHIHNWQPYRACGLLSKVSGNLIEVDGLSACLGELCKISSTK
DPNLLAEVIGFHNHTTLLMSLSPLHSVALGTEVLPLRRPPSLHLSDHLLG
RVLDAFGNPIDKKEDLPKTHRKPLLSLPPSPMMRQPIDQIFPTGIKAIDA
FLTLGKGQRIGVFSEPGSGKSSLLSAIALGSKSTINVIALIGERGREVRE
YIEKHSNALKQQRTIIIAAPAHETAPTKVIAGRAAMTIAEYFREQGHEVL
FIMDSLSRWIAALQEVALARGETLSAHQYAASVFHHVSEFTERAGNNDKG
SITALYAILYYPKHPDIFTDYLKSLLDGHFFLTSQGKALASPPIDILSSL
SRSAQALALPHHYAAAERLRSLLKVYNEALDIIHLGAYTPGQDEELDKAV
KLLPSIKAFLAQPLSSYCYLDNTLKQLEALADS
>gid:15578  fliN  Flagellar Motor Switch Domain/YscQ family
MAVAADSSASWLKSRNNFLSSLGKTEEQVAAPEFPKELCQHKIREKFRLE
DVQVSIKFRGSITAVEATKEFGVHLLIQPMVVQPWEVENLLFLTSEEDLQ
ELMVAVFDDASLASYFYEKDKLLGFHYYFVAEACKLFEELQWVPSLSAKV
GGDAIFTATSLQGSFQVVDISLRLDGKNVRCRLLLPEDTFQSCQKFFSGL
HDESDLHNIDQTQQISLSVEVGYSQLTQEEWHQVVPGSFIMLDSCLYDPE
TEESGALLTVQKHQFFGGRFLTPSSGEFKITSYPNLTHEDPPLPENPQAS
AAPLPGYSRLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGA
KVGRGEIIALGDVLGIRVLEV
>gid:15694  gspD  General Secretion Protein D
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMAS
FNANMREYSLQLSKLYEEARKLRASGTEDEALWKDLIRRIGEVRGYLREI
EELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGA
IKIATLSKFVVPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCS
VAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKFINPETTHVDV
IAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISIL
NAAFREDLTKDVSEESLGLRVVPLQYQGRSLFLSGTAALVQQALTLIREL
EEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQ
MLLKKLDVPKKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSV
SWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMN
QTPARIAVVDEMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSY
ITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVIIGGLRCKQMS
DSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERK
EEALLSSRPGEREEYYQALAASEAAARAAHKKLEMFPASGVSLSQVERQE
YDGC
>gid:15695  gspE  Genral Secretion Protein E
MAASILSQELLDILPYTFLKKHCLLPIEESSEAITIAHATATSVIAQDEV
KLLIKKPVRFVLKEESEILQRLQQLYSNREGNVSDMLLTMKEEDGTTISE
EEDLLETTDTIPVVRLLNWILKEAIEERASDIHFEPCEDSMRIRYRIDGV
LHDRHSPPSHLRSALTTRLKVLAKMDIAEHRLPQDGRIKIHIGGQEVDMR
VSTVPVIYGERVVLRILDKRNVILDIAGLHMPKGTEILFKDTITAPEGIL
LVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPEYKLPGIAQIAVKPK
IGLTFARGLRHLLRQDPDILMVGEIRDQETAEIAIQAALTGHLVVSTLHT
NDAISAIPRLLDMGIESYLLSATLVGVVAQRLVRTICPYCKVAYTPENQE
KSFLASLGKDTEMPLYRGQGCVHCFRSGYKGRQGIYEFLRPNTLFRSEVA
SNRPYHILRETAEQNGFLPILEHGIALAVSGETTLAEVLRVTKRCD
>gid:15696  gspF  General Secretion Protein F
MPRYRYTYLDPKERRKRGYLEALHIQEAREKLAQENIQVLDIREVALRRM
SIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHEQKMGLLLTSFMET
LRSGGSLSQAMAAHPNIFDHFYCSGVAAGESVGNLEGCLQNIIVVLEERA
QITKKMVGALSYPCVLLVFSFAVMLFFLLGVIPSLKETFENMEVKGLTKI
VFGVSDCLSAYRYLFLGFASALITVGILMRHRIPWKKILEKLLFALPGTK
KFVVKVAVNRFCSVASAILKGGGTLIEGLDLGCDAIPYDRLKTDMRDIVQ
AVIGGGSLSQELAQRSWVPKLAIGMIALGEESGDLADVLGYVAHIYNEDT
QKTLASITSWCQPVILIFLGGLIGVIMLAILIPLTSNIQTL
>gid:15329  pmp_16  Polymorphic Outer Membrane Protein E Family
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFV
GNRHNSSQDIVLSNYKSIDNILLLWTSAGGAVSCNNFLLSNVEDHAFFSK
NLAIGTGGAIACQGACTITKNRGPLIFFSNRGLNNASTGGETRGGAIACN
GDFTISQNQGTFYFVNNSVNNWGGALSTNGHCRIQSNRAPLLFFNNTAPS
GGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAIKNNSGSVIFN
NNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQ
FLTIKNSGHVYFTNNQGNWGGALMLLQDSTCLLFAEQGNIAFQNNEVFLT
TFGRYNAIHCTPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANH
QGTILFSSAYIPEASDYENNFISSSKNTSELRNGVLSIEDRAGWQFYKFT
QKGGILKLGHAASIATTANSETPSTSVGSQVIINNLAINLPSILAKGKAP
TLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDSIDLSEPLQNI
HLLSLSDVTARHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNAS
IETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFHTMFSLLRSYN
RTGDSDIERPFLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETS
LHQKISLGFAQFFTRTKEIGSSNNVSAHNTVSSLYVELPWFQEAFATSTV
LAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSYLHLSP
FVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQGKWQSKFHVP
TEWTLELSYQPVLYQQNPQIGVTLLASGGSWDILGHNYVRNALGYKVHNQ
TALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF
>gid:15309  pmp_8  Polymorphic Outer Membrane Protein G Family
MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKST
ADANGTNYVLSGNVYINDAGKGTALTGCCFTETTGDLTFTGKGYSFSFNT
VDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGAL
NLTDNGTILFSQNVSNEANNNGGAITTKTLSISGNTSSITFTSNSAKKLG
GAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSITQNSSLFFSG
NTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHG
LDLSAAGPTLFSNNRCGNTAAGKGGAIAIADSGSLSLSANQGDITFLGNT
LTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL
TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTL
ALKGNVELDVNGFTQTEGSTLLMQPGTKLKADTEAISLTKLVVDLSALEG
NKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAA
TAASDIYIDALLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTG
YNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQRGLWASGTAN
FFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFI
VENTSHNYLASLYLQHRAFLGGLPMPSFGSITDMLKDIPLILNAQLSYSY
TKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL
KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFE
ISLAYIGDVYRKNPRSRTSLMVSGASWTSLCKNLARQAFLASAGSHLTLS
PHVELSGEAAYELRGSAHIYNVDCGLRYSF
>gid:15576  yscC  probable Yop proteins translocation protein C/general secretion pathway protein
MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSAN
VKHNLRDEKLAACPKNSAASLSAKKSHTKKTTPGSIPSKVFSKFDATQDK
TFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEE
PVPAASKEQLDSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDV
QPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSEEEKVKERLTK
RELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTI
VSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPHLSKLSTVVTD
SSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI
ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGT
LAEDDAFQMFIQPGTNKIFVVSSPRLANKAEQLLKSLDVPEMAHTLDDPA
STALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMD
EDFINTLNSIQWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVL
ILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATPTKATVPPGT
PNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLL
SALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQ
NIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA
ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQ
KRNIMMFIKPKVISSFEEGTRVTNKEGYRYNWEADEGSMQVAPRHAPECQ
GPPSLQAESDFKIIEIEAQ
>gid:15705  yscL  Yop proteins translocation protein L
MKFFSLIFKDDDVSPNKKVLSPEAFSAFLDAKELLEKTKADSEAYVAETE
QKCAQIRQEAKDQGFKEGSESWSKQIAFLEEETKNLRIRVREALVPLAIA
SVRKIIGKELELHPETIVSIISQALKELTQNKHIIISVNPKDLPLVEKSR
PELKNIVEYADSLILTAKPDVTPGGCIIETEAGIINAQLDVQLDALEKAF
STILKAKNPVDEPSETSSSTDSSSLSNDQDKKE
>gid:15581  yscN  Yops secretion ATPase
MDQLTTDFDTLMSQLGDVNLTTVVGRITEVVGMLIKAVVPNVRVGEVCLV
KRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPSSEVIPTGLPLHIRAGN
GLLGRVLNGLGEPIDVETKGPLQNVDQTFPIFRAPPDPLHRAKLRQILST
GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG
ERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLE
RSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRR
GSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>gid:15704  yscR  Yop proteins translocation protein R
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQ
QPVAASSVPSYMPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLAL
SPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFP
TGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNT
PKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVL
IYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQG
LMISFK
>gid:15186  yscU  Yop proteins translocation protein U
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFK
HLGGFLVSMLSQAPTRHDPVITLFYLKNCLMLILTASLPLLGAVAVVGVI
VGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGA
ALILYITLKSKVSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAI
LDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDS
SSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAE
KYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLNAQNPN
NKNTNQPDHL