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2024-05-15 23:45:42

Gene list

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COG category: Cell motility
Organism: Phage Gifsy-1

Number of genes found: 114

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Phage Gifsy-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SC0105 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS123054 282 + 0.439716
NA SC2596 putative bacteriophage proteinSubName: Full=Putative bacteriophage protein; chromosome CDS2761217 1953 - 0.526882
NA SC0275 putative outer membrane protein, OmpA familySubName: Full=Putative outer membrane protein, OmpA family; chromosome CDS315511 1305 + 0.594636
bcfA SC0020 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS24470 543 + 0.521179
bcfB SC0021 fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS24972 828 + 0.509662
bcfD SC0022 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS28426 1008 + 0.501984
bcfE SC0023 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29434 546 + 0.492674
bcfF SC0024 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29995 519 + 0.558767
bcfG SC0025 fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS30479 732 + 0.54235
cheA SC1928 sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheYSubName: Full=Sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheY; chromosome CDS2039758 2016 - 0.550099
cheB SC1924 methyl esterase, response regulator for chemotaxis (cheA sensor)RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; chromosome CDS2035270 1050 - 0.559048
cheM SC1926 methyl accepting chemotaxis protein II, aspartate sensor-receptorSubName: Full=Methyl accepting chemotaxis protein II, aspartate sensor-receptor; chromosome CDS2037336 1893 - 0.554147
cheR SC1925 glutamate methyltransferase, response regulator for chemotaxisRecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; chromosome CDS2036316 867 - 0.527105
cheV SC2314 putative chemotaxis signal transduction proteinSubName: Full=Putative chemotaxis signal transduction protein; chromosome CDS2434922 1002 + 0.51996
cheW SC1927 purine-binding chemotaxis protein; regulationSubName: Full=Purine-binding chemotaxis protein regulation; chromosome CDS2039234 504 - 0.525794
cheZ SC1922 chemotactic response; CheY protein phophataseRecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; chromosome CDS2034208 567 - 0.585538
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stressesSubName: Full=Periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses; chromosome CDS4203638 501 + 0.50499
csgA SC1092 curlin major subunit, coiled surface structures; crypticSubName: Full=Curlin major subunit, coiled surface structures cryptic; chromosome CDS1211715 456 + 0.513158
fimA SC0582 major type 1 subunit fimbrin (pilin)SubName: Full=Major type 1 subunit fimbrin (Pilin); chromosome CDS648395 624 + 0.533654
fimD SC0585 outer membrane usher proteinSubName: Full=Outer membrane usher protein; chromosome CDS651732 2619 + 0.556319
fimF SC0587 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS655382 519 + 0.552987
fimF SC4440 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4751117 546 - 0.501832
fimH SC0586 minor fimbrial subunitSubName: Full=Minor fimbrial subunit; chromosome CDS654365 1008 + 0.516865
fimI SC0583 fimbrial protein internal segmentSubName: Full=Fimbrial protein internal segment; chromosome CDS649094 534 + 0.543071
flgA SC1120 flagellar biosynthesis; assembly of basal-body periplasmic P ringSubName: Full=Flagellar biosynthesis assembly of basal-body periplasmic P ring; chromosome CDS1237485 660 - 0.578788
flgB SC1121 flagellar biosynthesis, cell-proximal portion of basal-body rodRecName: Full=Flagellar basal body rod protein FlgB; chromosome CDS1238301 417 + 0.52518
flgC SC1122 flagellar biosynthesis, cell-proximal portion of basal-body rodSubName: Full=Flagellar biosynthesis, cell-proximal portion of basal-body rod; chromosome CDS1238721 405 + 0.558025
flgD SC1123 flagellar biosynthesis, initiation of hook assemblySubName: Full=Flagellar biosynthesis, initiation of hook assembly; chromosome CDS1239137 699 + 0.540773
flgE SC1124 flagellar biosynthesis, hook proteinSubName: Full=Flagellar biosynthesis, hook protein; chromosome CDS1239862 1212 + 0.552805
flgF SC1125 flagellar biosynthesis, cell-proximal portion of basal-body rodSubName: Full=Flagellar biosynthesis, cell-proximal portion of basal-body rod; chromosome CDS1241094 756 + 0.60582
flgG SC1126 flagellar biosynthesis, cell-distal portion of basal-body rodSubName: Full=Flagellar biosynthesis, cell-distal portion of basal-body rod; chromosome CDS1241863 783 + 0.564496
flgH SC1127 flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring proteinRecName: Full=Flagellar L-ring protein; AltName: Full=Basal body L-ring protein; Flags: Precursor; chromosome CDS1242691 708 + 0.542373
flgI SC1128 putative flagella basal body proteinRecName: Full=Flagellar P-ring protein; AltName: Full=Basal body P-ring protein; Flags: Precursor; chromosome CDS1243404 1104 + 0.578804
flgJ SC1129 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS1244507 951 + 0.561514
flgK SC1130 flagellar biosynthesis, hook-filament junction protein 1SubName: Full=Flagellar biosynthesis, hook-filament junction protein 1; chromosome CDS1245522 1662 + 0.518652
flgL SC1131 flagellar biosynthesis; hook-filament junction proteinSubName: Full=Flagellar biosynthesis hook-filament junction protein; chromosome CDS1247198 954 + 0.536688
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinSubName: Full=Anti-FliA (Anti-sigma) factor also known as RflB protein; chromosome CDS1237100 294 - 0.517007
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLSubName: Full=Flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL; chromosome CDS1236673 423 - 0.539007
flhA SC1920 flagellar biosynthesis; possible export of flagellar proteinsSubName: Full=Flagellar biosynthesis possible export of flagellar proteins; chromosome CDS2030792 2079 - 0.562771
flhB SC1921 putative part of export apparatus for flagellar proteinsSubName: Full=Putative part of export apparatus for flagellar proteins; chromosome CDS2032863 1152 - 0.560764
fliC+F2048 SC1962 Flagellar synthesis: phase 2 flagellin (filament structural protein)RecName: Full=Flagellin; AltName: Full=Phase 1-C flagellin; chromosome CDS2069412 1506 - 0.488048
fliD SC1964 flagellar biosynthesis; filament capping protein; enables filament assemblySubName: Full=Flagellar biosynthesis filament capping protein enables filament assembly; chromosome CDS2071174 1404 + 0.494302
fliE SC1972 putative Flagellar hook-basal body proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2077769 315 - 0.546032
fliF SC1974 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2078300 1683 + 0.571004
fliG SC1975 flagellar biosynthesis, component of motor switching and energizingRecName: Full=Flagellar motor switch protein FliG; chromosome CDS2079975 996 + 0.547189
fliH SC1976 flagellar biosynthesis; possible export of flagellar proteinsSubName: Full=Flagellar biosynthesis possible export of flagellar proteins; chromosome CDS2080963 708 + 0.607345
fliI SC1977 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; chromosome CDS2081670 1371 + 0.596645
fliJ SC1978 flagellar fliJ proteinSubName: Full=Flagellar fliJ protein; chromosome CDS2083062 444 + 0.513514
fliK SC1979 flagellar hook-length control proteinSubName: Full=Flagellar hook-length control protein; chromosome CDS2083502 1218 + 0.615764
fliL SC1980 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2084764 528 + 0.543561
fliM SC1981 flagellar biosynthesis, component of motor switch and energizingRecName: Full=Flagellar motor switch protein FliM; chromosome CDS2085296 1005 + 0.533333
fliN SC1982 flagellar biosynthesis, component of motor switch and energizingSubName: Full=Flagellar biosynthesis, component of motor switch and energizing; chromosome CDS2086297 414 + 0.543478
fliO SC1983 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2086710 378 + 0.603175
fliP SC1984 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2087087 738 + 0.536585
fliQ SC1985 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2087834 270 + 0.518519
fliR SC1986 putative flagellar biosynthetic proteinRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2088112 795 + 0.515723
fliS SC1965 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)SubName: Full=Flagellar biosynthesis repressor of class 3a and 3b operons (RflA activity); chromosome CDS2072592 408 + 0.495098
hofB SC0142 putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptakeSubName: Full=Putative integral membrane protein involved in biogenesis of fimbriae (Type IV pilin), protein transport, DNA uptake; chromosome CDS162377 1386 - 0.553391
hofC SC0141 putative component in type IV pilin biogenesisSubName: Full=Putative component in type IV pilin biogenesis; chromosome CDS161185 1203 - 0.540316
hopD SC3376 leader peptidase HopDSubName: Full=Leader peptidase HopD; chromosome CDS3551227 594 + 0.521886
invC SC2826 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2990205 1296 - 0.544753
invG SC2830 invasion protein; outer membraneSubName: Full=Invasion protein outer membrane; chromosome CDS2995125 1689 - 0.462404
lpfA SC3571 long polar fimbriaSubName: Full=Long polar fimbria; chromosome CDS3778230 537 - 0.463687
lpfB SC3570 long polar fimbrial chaperoneSubName: Full=Long polar fimbrial chaperone; chromosome CDS3777447 699 - 0.449213
lpfE SC3568 long polar fimbrial minor proteinSubName: Full=Long polar fimbrial minor protein; chromosome CDS3773266 528 - 0.511364
mac SC3079 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS3260089 1056 - 0.427083
mcp SC1652 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS1764539 1077 - 0.47818
mcp1 SC3094 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS3273782 1644 - 0.569343
mcp2 SC3162 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS3342869 1566 - 0.506386
motA SC1930 proton conductor component of motor, torque generatorSubName: Full=Proton conductor component of motor, torque generator; chromosome CDS2042704 888 - 0.513514
motB SC1929 enables flagellar motor rotation, linking torque machinery to cell wallSubName: Full=Enables flagellar motor rotation, linking torque machinery to cell wall; chromosome CDS2041778 930 - 0.545161
orgB SC2801 putative flagellar biosynthesis/type III secretory pathway proteinSubName: Full=Putative flagellar biosynthesis/type III secretory pathway protein; chromosome CDS2967315 681 - 0.449339
ppdA SC2938 prepilin peptidase dependent protein A, putative component in type IV pilin biogenesisSubName: Full=Prepilin peptidase dependent protein A, putative component in type IV pilin biogenesis; chromosome CDS3117055 471 - 0.55414
ppdD SC0143 putative major component of type IV pilin, prelipin peptidase dependent proteinSubName: Full=Putative major component of type IV pilin, prelipin peptidase dependent protein; chromosome CDS163772 438 - 0.541096
safB SC0293 putative fimbriae assembly chaparoneSubName: Full=Putative fimbriae assembly chaparone; chromosome CDS337447 738 + 0.47832
safC SC0294 putative fimbriae usherSubName: Full=Putative fimbriae usher; chromosome CDS338208 2511 + 0.543608
sipB SC2817 cell invasion proteinSubName: Full=Cell invasion protein; chromosome CDS2982642 1782 - 0.517957
spaO SC2823 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2987863 912 - 0.529605
spaS SC2819 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2985061 1071 - 0.434174
spy SC1329 periplasmic protein related to spheroblast formationSubName: Full=Periplasmic protein related to spheroblast formation; chromosome CDS1427220 486 + 0.5
ssaC SC1415 Secretion system apparatus SsaCSubName: Full=Secretion system apparatus SsaC; chromosome CDS1518145 1494 + 0.421687
ssaN SC1436 Secretion system apparatus SsaNSubName: Full=Secretion system apparatus SsaN; chromosome CDS1533379 1302 + 0.510753
ssaQ SC1439 Secretion system apparatus SsaQSubName: Full=Secretion system apparatus SsaQ; chromosome CDS1535396 969 + 0.457172
sseB SC1419 Secretion system effector SseBSubName: Full=Secretion system effector SseB; chromosome CDS1521622 591 + 0.434856
stbA SC0383 putative fimbriae; major subunitSubName: Full=Putative fimbriae major subunit; chromosome CDS428942 537 - 0.47486
stbB SC0382 putative fimbriae; chaparoneSubName: Full=Putative fimbriae chaparone; chromosome CDS428119 762 - 0.454068
stbC SC0381 putative fimbriae; usherSubName: Full=Putative fimbriae usher; chromosome CDS425574 2562 - 0.540593
stcB SC2166 putative periplasmic chaperone proteinSubName: Full=Putative periplasmic chaperone protein; chromosome CDS2268875 753 - 0.403718
stcC SC2165 paral putative outer membrane proteinSubName: Full=Paral putative outer membrane protein; chromosome CDS2266372 2490 - 0.457831
stdA SC2969 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS3149971 711 - 0.488045
stdB SC2968 putative outer membrane usher proteinSubName: Full=Putative outer membrane usher protein; chromosome CDS3147362 2490 - 0.608032
stdC SC2967 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS3146578 744 - 0.584677
steB SC2890 outer membrane usher proteinSubName: Full=Outer membrane usher protein; chromosome CDS3056123 2700 + 0.553704
stfA SC0195 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS226764 561 + 0.515152
stfC SC0196 putative fimbrial outer membrane usherSubName: Full=Putative fimbrial outer membrane usher; chromosome CDS227410 2658 + 0.55079
stfD SC2891 putative periplasmic fimbrial chaperoneSubName: Full=Putative periplasmic fimbrial chaperone; chromosome CDS3058835 774 + 0.549096
stfD SC0197 putative periplasmic fimbrial chaperoneSubName: Full=Putative periplasmic fimbrial chaperone; chromosome CDS230085 753 + 0.543161
sthA SC4439 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4750363 684 - 0.457602
sthB SC4438 putative fimbrial usher proteinSubName: Full=Putative fimbrial usher protein; chromosome CDS4747780 2538 - 0.469661
sthD SC4437 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS4747205 558 - 0.501792
sthE SC4436 putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS4746079 1086 - 0.519337
stiA SC0177 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS204490 540 - 0.524074
stiB SC0176 putative fimbrial chaparoneSubName: Full=Putative fimbrial chaparone; chromosome CDS203759 684 - 0.533626
stiC SC0175 putativie fimbrial usherSubName: Full=Putativie fimbrial usher; chromosome CDS201189 2544 - 0.553852
tcp SC3506 methyl-accepting transmembrane citrate/phenol chemoreceptorSubName: Full=Methyl-accepting transmembrane citrate/phenol chemoreceptor; chromosome CDS3698956 1644 + 0.556569
trg SC1621 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptorSubName: Full=Methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor; chromosome CDS1729036 1626 - 0.539975
tsr SC4385 methyl-accepting chemotaxis protein I, serine sensor receptorSubName: Full=Methyl-accepting chemotaxis protein I, serine sensor receptor; chromosome CDS4692472 1662 + 0.552347
virG SC0308 similar to Shigella VirG proteinSubName: Full=Similar to Shigella VirG protein; chromosome CDS354962 408 - 0.470588
vmtV SC1226 Gifsy-1 prophage VmtVSubName: Full=Gifsy-1 prophage VmtV; chromosome CDS1335545 744 + 0.560484
vmtV SC0991 Gifsy-2 prophage VmtVSubName: Full=Gifsy-2 prophage VmtV; chromosome CDS1104335 1530 + 0.533333
yfcP SC2894 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS3060616 537 + 0.52514
yggR SC3039 putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS3219437 981 - 0.571865
yifL SC3845 putative outer membrane lipoproteinSubName: Full=Putative outer membrane lipoprotein; chromosome CDS4086260 204 + 0.534314
yrfC SC3423 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3598704 540 - 0.588889