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2024-04-29 10:20:51

Gene list

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COG category: Cell motility
Organism: Phage Gifsy-1

Number of genes found: 114

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Phage Gifsy-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC0105 hypothetical proteinchromosome CDS123054 282 + 0.439716
NA SC2596 putative bacteriophage proteinchromosome CDS2761217 1953 - 0.526882
NA SC0275 putative outer membrane protein, OmpA familychromosome CDS315511 1305 + 0.594636
bcfA SC0020 fimbrial subunitchromosome CDS24470 543 + 0.521179
bcfB SC0021 fimbrial chaparonechromosome CDS24972 828 + 0.509662
bcfD SC0022 fimbrial subunitchromosome CDS28426 1008 + 0.501984
bcfE SC0023 fimbrial subunitchromosome CDS29434 546 + 0.492674
bcfF SC0024 fimbrial subunitchromosome CDS29995 519 + 0.558767
bcfG SC0025 fimbrial chaparonechromosome CDS30479 732 + 0.54235
cheA SC1928 sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheYchromosome CDS2039758 2016 - 0.550099
cheB SC1924 methyl esterase, response regulator for chemotaxis (cheA sensor)chromosome CDS2035270 1050 - 0.559048
cheM SC1926 methyl accepting chemotaxis protein II, aspartate sensor-receptorchromosome CDS2037336 1893 - 0.554147
cheR SC1925 glutamate methyltransferase, response regulator for chemotaxischromosome CDS2036316 867 - 0.527105
cheV SC2314 putative chemotaxis signal transduction proteinchromosome CDS2434922 1002 + 0.51996
cheW SC1927 purine-binding chemotaxis protein; regulationchromosome CDS2039234 504 - 0.525794
cheZ SC1922 chemotactic response; CheY protein phophatasechromosome CDS2034208 567 - 0.585538
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresseschromosome CDS4203638 501 + 0.50499
csgA SC1092 curlin major subunit, coiled surface structures; crypticchromosome CDS1211715 456 + 0.513158
fimA SC0582 major type 1 subunit fimbrin (pilin)chromosome CDS648395 624 + 0.533654
fimD SC0585 outer membrane usher proteinchromosome CDS651732 2619 + 0.556319
fimF SC0587 putative fimbrial proteinchromosome CDS655382 519 + 0.552987
fimF SC4440 putative fimbrial chaparone proteinchromosome CDS4751117 546 - 0.501832
fimH SC0586 minor fimbrial subunitchromosome CDS654365 1008 + 0.516865
fimI SC0583 fimbrial protein internal segmentchromosome CDS649094 534 + 0.543071
flgA SC1120 flagellar biosynthesis; assembly of basal-body periplasmic P ringchromosome CDS1237485 660 - 0.578788
flgB SC1121 flagellar biosynthesis, cell-proximal portion of basal-body rodchromosome CDS1238301 417 + 0.52518
flgC SC1122 flagellar biosynthesis, cell-proximal portion of basal-body rodchromosome CDS1238721 405 + 0.558025
flgD SC1123 flagellar biosynthesis, initiation of hook assemblychromosome CDS1239137 699 + 0.540773
flgE SC1124 flagellar biosynthesis, hook proteinchromosome CDS1239862 1212 + 0.552805
flgF SC1125 flagellar biosynthesis, cell-proximal portion of basal-body rodchromosome CDS1241094 756 + 0.60582
flgG SC1126 flagellar biosynthesis, cell-distal portion of basal-body rodchromosome CDS1241863 783 + 0.564496
flgH SC1127 flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring proteinchromosome CDS1242691 708 + 0.542373
flgI SC1128 putative flagella basal body proteinchromosome CDS1243404 1104 + 0.578804
flgJ SC1129 flagellar biosynthesischromosome CDS1244507 951 + 0.561514
flgK SC1130 flagellar biosynthesis, hook-filament junction protein 1chromosome CDS1245522 1662 + 0.518652
flgL SC1131 flagellar biosynthesis; hook-filament junction proteinchromosome CDS1247198 954 + 0.536688
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1237100 294 - 0.517007
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLchromosome CDS1236673 423 - 0.539007
flhA SC1920 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS2030792 2079 - 0.562771
flhB SC1921 putative part of export apparatus for flagellar proteinschromosome CDS2032863 1152 - 0.560764
fliC+F2048 SC1962 Flagellar synthesis: phase 2 flagellin (filament structural protein)chromosome CDS2069412 1506 - 0.488048
fliD SC1964 flagellar biosynthesis; filament capping protein; enables filament assemblychromosome CDS2071174 1404 + 0.494302
fliE SC1972 putative Flagellar hook-basal body proteinchromosome CDS2077769 315 - 0.546032
fliF SC1974 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2078300 1683 + 0.571004
fliG SC1975 flagellar biosynthesis, component of motor switching and energizingchromosome CDS2079975 996 + 0.547189
fliH SC1976 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS2080963 708 + 0.607345
fliI SC1977 flagellum-specific ATP synthasechromosome CDS2081670 1371 + 0.596645
fliJ SC1978 flagellar fliJ proteinchromosome CDS2083062 444 + 0.513514
fliK SC1979 flagellar hook-length control proteinchromosome CDS2083502 1218 + 0.615764
fliL SC1980 flagellar biosynthesischromosome CDS2084764 528 + 0.543561
fliM SC1981 flagellar biosynthesis, component of motor switch and energizingchromosome CDS2085296 1005 + 0.533333
fliN SC1982 flagellar biosynthesis, component of motor switch and energizingchromosome CDS2086297 414 + 0.543478
fliO SC1983 flagellar biosynthesischromosome CDS2086710 378 + 0.603175
fliP SC1984 flagellar biosynthesischromosome CDS2087087 738 + 0.536585
fliQ SC1985 flagellar biosynthesischromosome CDS2087834 270 + 0.518519
fliR SC1986 putative flagellar biosynthetic proteinchromosome CDS2088112 795 + 0.515723
fliS SC1965 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)chromosome CDS2072592 408 + 0.495098
hofB SC0142 putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptakechromosome CDS162377 1386 - 0.553391
hofC SC0141 putative component in type IV pilin biogenesischromosome CDS161185 1203 - 0.540316
hopD SC3376 leader peptidase HopDchromosome CDS3551227 594 + 0.521886
invC SC2826 surface presentation of antigens; secretory proteinschromosome CDS2990205 1296 - 0.544753
invG SC2830 invasion protein; outer membranechromosome CDS2995125 1689 - 0.462404
lpfA SC3571 long polar fimbriachromosome CDS3778230 537 - 0.463687
lpfB SC3570 long polar fimbrial chaperonechromosome CDS3777447 699 - 0.449213
lpfE SC3568 long polar fimbrial minor proteinchromosome CDS3773266 528 - 0.511364
mac SC3079 putative methyl-accepting chemotaxis proteinchromosome CDS3260089 1056 - 0.427083
mcp SC1652 putative methyl-accepting chemotaxis proteinchromosome CDS1764539 1077 - 0.47818
mcp1 SC3094 putative methyl-accepting chemotaxis proteinchromosome CDS3273782 1644 - 0.569343
mcp2 SC3162 putative methyl-accepting chemotaxis proteinchromosome CDS3342869 1566 - 0.506386
motA SC1930 proton conductor component of motor, torque generatorchromosome CDS2042704 888 - 0.513514
motB SC1929 enables flagellar motor rotation, linking torque machinery to cell wallchromosome CDS2041778 930 - 0.545161
orgB SC2801 putative flagellar biosynthesis/type III secretory pathway proteinchromosome CDS2967315 681 - 0.449339
ppdA SC2938 prepilin peptidase dependent protein A, putative component in type IV pilin biogenesischromosome CDS3117055 471 - 0.55414
ppdD SC0143 putative major component of type IV pilin, prelipin peptidase dependent proteinchromosome CDS163772 438 - 0.541096
safB SC0293 putative fimbriae assembly chaparonechromosome CDS337447 738 + 0.47832
safC SC0294 putative fimbriae usherchromosome CDS338208 2511 + 0.543608
sipB SC2817 cell invasion proteinchromosome CDS2982642 1782 - 0.517957
spaO SC2823 surface presentation of antigens; secretory proteinschromosome CDS2987863 912 - 0.529605
spaS SC2819 surface presentation of antigens; secretory proteinschromosome CDS2985061 1071 - 0.434174
spy SC1329 periplasmic protein related to spheroblast formationchromosome CDS1427220 486 + 0.5
ssaC SC1415 Secretion system apparatus SsaCchromosome CDS1518145 1494 + 0.421687
ssaN SC1436 Secretion system apparatus SsaNchromosome CDS1533379 1302 + 0.510753
ssaQ SC1439 Secretion system apparatus SsaQchromosome CDS1535396 969 + 0.457172
sseB SC1419 Secretion system effector SseBchromosome CDS1521622 591 + 0.434856
stbA SC0383 putative fimbriae; major subunitchromosome CDS428942 537 - 0.47486
stbB SC0382 putative fimbriae; chaparonechromosome CDS428119 762 - 0.454068
stbC SC0381 putative fimbriae; usherchromosome CDS425574 2562 - 0.540593
stcB SC2166 putative periplasmic chaperone proteinchromosome CDS2268875 753 - 0.403718
stcC SC2165 paral putative outer membrane proteinchromosome CDS2266372 2490 - 0.457831
stdA SC2969 putative fimbrial-like proteinchromosome CDS3149971 711 - 0.488045
stdB SC2968 putative outer membrane usher proteinchromosome CDS3147362 2490 - 0.608032
stdC SC2967 putative fimbrial chaparone proteinchromosome CDS3146578 744 - 0.584677
steB SC2890 outer membrane usher proteinchromosome CDS3056123 2700 + 0.553704
stfA SC0195 putative fimbrial subunitchromosome CDS226764 561 + 0.515152
stfC SC0196 putative fimbrial outer membrane usherchromosome CDS227410 2658 + 0.55079
stfD SC2891 putative periplasmic fimbrial chaperonechromosome CDS3058835 774 + 0.549096
stfD SC0197 putative periplasmic fimbrial chaperonechromosome CDS230085 753 + 0.543161
sthA SC4439 putative fimbrial chaparone proteinchromosome CDS4750363 684 - 0.457602
sthB SC4438 putative fimbrial usher proteinchromosome CDS4747780 2538 - 0.469661
sthD SC4437 putative fimbrial subunitchromosome CDS4747205 558 - 0.501792
sthE SC4436 putative major fimbrial subunitchromosome CDS4746079 1086 - 0.519337
stiA SC0177 putative fimbrial subunitchromosome CDS204490 540 - 0.524074
stiB SC0176 putative fimbrial chaparonechromosome CDS203759 684 - 0.533626
stiC SC0175 putativie fimbrial usherchromosome CDS201189 2544 - 0.553852
tcp SC3506 methyl-accepting transmembrane citrate/phenol chemoreceptorchromosome CDS3698956 1644 + 0.556569
trg SC1621 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptorchromosome CDS1729036 1626 - 0.539975
tsr SC4385 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4692472 1662 + 0.552347
virG SC0308 similar to Shigella VirG proteinchromosome CDS354962 408 - 0.470588
vmtV SC0991 Gifsy-2 prophage VmtVchromosome CDS1104335 1530 + 0.533333
vmtV SC1226 Gifsy-1 prophage VmtVchromosome CDS1335545 744 + 0.560484
yfcP SC2894 fimbrial subunitchromosome CDS3060616 537 + 0.52514
yggR SC3039 putative protein transportchromosome CDS3219437 981 - 0.571865
yifL SC3845 putative outer membrane lipoproteinchromosome CDS4086260 204 + 0.534314
yrfC SC3423 putative inner membrane proteinchromosome CDS3598704 540 - 0.588889