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# Chlamydophila caviae GPIC

>CCA00755 conserved hypothetical protein
MTIQPISTASTASIASKETAQAAQLPPLDPLNTPPIGALLFSIYELLLQA
IEIRQQTVLTQSQQLNDNTNIQQQLNQATNQIKFAVVSAGGKEDEITRVQ
NQNQNYSAQRSNIQDELVTARQNGQIILSHASTNINIIQQLASQDSSFLK
TTSAIGSTVNQLNKPPS
>CCA00460 type III secretion protein, hrpY/hrcU family
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFSLASFFAK
HLGSFLVSIFKQAPINHDPKVTLYYLQNCLVLILTTSLPLLGAVGFVGII
VGFLVVGPTFSTEVFKPDLKKFNPIDNLKQKFKVKTLIELLKSILKIFGA
ALILYVTLKNRVPLIIETAGVSPIVIAVIFKQILYKAVTSIGIFFLVVAV
LDLVYQRKNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDT
SSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIVEAE
KYGVPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLNAQNPN
NKNINQPDNL
>CCA00386 conserved hypothetical protein
MPYKFFSYLTFCMDDLALGDTSNEHMGFQGMFPENMKLEMFKMLGSLILL
LTLFGIGVWAFKKFLKSKGPGFGNSSTIKILDRRSLNPKTCIYIIRVVNK
ILVIAESGEKITLLSEFPPDTDINELLQKNEKKEHASTSDFLSKSIRKFH
KNKKVDSPQISNPTDKEF
>CCA00273 polymorphic outer membrane protein E/F family protein/autotransporter, putative
MKHKFIYNLIFSISLAYFYNIDAREVVLLAPLPSENSLYIPQSLEFLLQK
TNLTGQTQSSESLSLKNYEDIFAISQMTTDSEGASVKCSNLYIQDTQGHI
ILIGNISPRSGTGIYTNRDLEISNSNQVIVFSNNLARSTALDQNRSLDGG
TINSRFLDIKNNNAPIYFLRNAAYSKGGAIMSGERFDLSGNKSSCIFCDN
ATLAVDSQGGALRAQDFNCINNLGDIVFNNNQSKSGGALSVNTTCLFSEN
QGNLIFKNNRTMSMHDGNGGAIDAKNTAIANNKGIISFHNNSSSYRGGAI
KGAVCTIYNNNDIFFTNNSAQEGGAILIAGGGCSLTLSADKGNIVFNNNL
SISPNKIYRNAVCIASDADFVVGAKLGQHILFYDPIEHDHNATNPMLINP
DVEDHGCVIFSGATVDSHLKTENNLFSKCKNTIELKNGVLAIENDAGLAT
YKFIQTGGLVCLGSGGTLTTREKDNNKNSTLQLTNLGLILPQLITSKAET
AKLWIYPSATGNTFQENTLASITVSGDLILTNEEGHSPYDDVNLSRGITR
VPFLYLCDNATKVIDVASLNIEAINDHLHYGYQGVWSPYWEEYTTTPDTT
SALTANTSHRVLYADWTPTGYIPNPEYRGDLVANALWQAAYNTITGLHGF
TPPPNRSSLEVAGGGSGAYVSQKTRNAKPGFELFSKGYATQASRSTETNR
SFALSFSQFYSEIKESESKDKVSANCYFAGAQLQIPWFYENLLTSASLGY
AYSQNHVKTKNQTTNALSEGDFHSHTLGSELRCMFRERAILNLQFRPFIK
TLWVRSTQGSFTETGKNSRNFKTKDPLINMTLPLGIYGYAEHEVYLKTSW
EMQLAYTPTIYRQKPKINTTRIVSNGSWITSGTPVNRHAFSISIKNTTSL
NRMSLSINYHGDFSKSTLCNFLNITGEIKF
>CCA00915 conserved hypothetical protein
MTVQPSYITFNRNVTAALLGDQVDMTMPFSSSVFLFQELDQKAKGLKYAL
GLLQEAETKLPVAQISSEFVDAAFKNIPEEKIAFPNVDYDSMKVDEILAN
PNLAAAKLYIEGLERSFDDWLKDIDQGGIFNPTEAEKTLVQEYRIRLSTL
KQAFTEGNPTDAQYTSLYGLAKEFVGTIEKLEGKDAPPKSKVINFWQNMM
VVYNAMISLSYPVSEQLNIKIAECSLNIEEANKVIELIRQFSSSLKDLLN
PVWDISSTATNLTGSGYNAMQGGMTRTYIVLAGVYRMLMDKYSSNAADTM
PTEVKAGVTTFINAMGGLKMGERATLPSFLSLLYSYLVCAGQYGEKSSSA
QADYKKVLQEELSYWDERGNSSFNVADVPLKTFANSPTTSYEGISLFYNG
SQTNLNPEFFQKCVELMTKQPSKVMSRSDYQKVIDGMNNGIKQIQAQITK
WTEESAKLMAQKDSMDPTTLNYFESMKEGKKTFVDTSPIQMVYSSLLLDK
YLPNQQHVLETLGVQMTFSNKAAKYMNQIISQVTNFQTADVYYSLAIYLR
QMNLQALTDALGKAQSVLDKEKVRCKSDIERCLRTKTELKKILDNIKRDA
ELTSSQQRELRQTISGYEFQFEALLRNLGNLYIFLNSMEFTPVEKPDEVD
EAFDIQVNKQKSDNWPRFLSAFESFVIEGGENGIIPGGEQQILQSLEATQ
QNFTTFNQNQQLALQLESSAIQQEWTMVSAALALMNQIFAKLTRRFK
>CCA00909 virulence factor transport ATPase, putative
MTNLNYEKSQLQYWQPYRTCGLLSRVSGNLLEVQGLSACLGELCRICTPK
YPDLLAEVIGFHNQTTLLMSLSPMHYVALGSEVLPLRRPPSLHLSDHLLG
RVIDGFGNPLDNKKSLPKTHIKPLIAPPPPPMSRQPIQEIFPTGIKAIDA
FLTLGKGQRIGVFSEPGSGKSSLLSAIASGSKSTINVIALIGERGREVRE
YIEQHSSGLKQLRTIIVASPAHETAPTKVIAGRAAMTIAEYFRDQGHDVL
FIMDSLSRWIAALQEVALATGETLAAHQYAASVFHHVSEFTERAGNNDRG
SITALYAILHYPNHPDIFTDYLKSLLDGHFFLTNQGKALASPPIDILLSL
SRSAKKLSRPHHYAAAEKLRALLKTYQEALDIIQLGAYTPGQDKDLDDAV
KILPNIKKFLSQPLSSYCQLENTLKELEALVNLE
>CCA00945 conserved hypothetical protein
MKKQKRKQSITLIEMMVVITLIGIVGGALAFNMRGSIQKGKVFQSEQNCA
KVYDILMMEYATGGNSLREIVDQKESILEGAAWCKDGKKLLKDAWGEDII
VKLNDKGDDLIVFSEKASGTNSKRG
>CCA00908 conserved hypothetical protein
MTLSQSPGSLSDAEDSPERKKDWNEGYSQGFSEGETSGYDKAFQELLSLI
QIFRKLSIRMLSEIEKVPQQLKPDLVELAILTCEKFLYKKLDNIEELALL
ISSALQQHTSLRSLSPVKIFLHPEDHKKLNDWIATHEIPMIKHAEFLPDI
SCKKSSYKMESPSGILRQEIGEELDHLLSVLTT
>CCA00907 secretory protein, YscJ/FliF family
MFFQFLKKKVASLGISPLGLLVVSAALGSALLFGKNTSKSPDFSQPSEKK
TPGWFKLSQVGNPKLLESLAKKEQIERDLTMFHSVANATVALSLPTEDDP
DIIPQVSVILSSHKDEVFSSSLLLSIVDYLSSSIPGLAKEHITLSDNLGN
TYSPGEFSNSLLLSACESYLGKIFPKEHFALTCLNAKQTPTIQLTVNEKY
LAKFPKDKRESFLKHAEDQLKKISGDNHPIVIEKFPFSQTIQKDRLSYKL
LVGGIILLSSLGIIALASFYLAFYAYERIPLESKKIKQGINITKLVEILQ
KESPEKIRVILSYLDPKKADEIFQHLPEDVKHQVLKL
>CCA00015 conserved hypothetical protein
MVNPVGPIDESKNIAPADLSTLGMQASAANRSSEAQSITGIAGKSGSSQP
SVETVGRLSFLSSARKSLASLFDKISSFFSGKTTPQTFDEAKTQAESAKT
ALQSATTYDQFKTALQQLQDAVKQMEQLATTDAEKATVATWKTALEAQKS
TLDTLNQLGAILTENQKLLEAIKTTSSMDQIMGAAGQVETNKTTAEELIK
QLKEAGVSYPVIDDLEKQITTSGTQVTELADAISEAYAAGKNSTAAVGQA
QANNSPANIEASKQTIANAQKVIEDALKLAPDSPILKAALKEQQQAAKDI
LNVKPSGGSDVPIGGPGAPGSVGTSQNRGATLGEVRVSMLLTDVDNETAA
IIMQGFRNMIDNFHDQNSDFTAPLEEIMNQVTDLSTQINPADAEATAQLQ
EIQQTIQDALQGTAGQDGMINALGAITTAASISTGAPIASANQGGSAVKQ
LYKTGSTAASSKSYADSLSAGYGAYQSLNDVYSRSSASNREVLDRTSTPA
LTQTVSRTETRPRDNDNAAQRFARTIAANSNTLGDVYASVGVLQTLLGVL
QNNPQANEEEIKQKLTSEVTKAPQSGYPHVQLSNDSTKKFIAQLENEFVQ
GSKRLAEAKEAAFEKQPLFIQQVLVNVASLFSGYLQ
>CCA00428 flhA, protein export protein, FHIPEP family
MVTSKQEKLWRMALIPLGILLSFLIPLPQVLLDIGLCINFILSLTVVFWV
FSLKSSRDAKLFPPLFLYLCLFRLGLNLASTRLILSSGWASSMIFSLGNF
FSSGSLGAGTVACCLFFLVNFLVIAKGSERIAEVRARFILEALPGKQMSL
DADLLSGRASGMDVEKQKQDLFEESDFFSSMEGVFRFVKGDAIVSCILLI
VNSIAATYFSYSLDGTTDSLWLTVVGDALVSQVPALLTSCAAATLISKVG
QKDSLIEHMMNYYEQARIHFRTIALLLSSLLFIPGTPKGSVALFVIALFI
AYKEPKGIQDLALIPEEFQQIHLSLPTNYTGEDPREIYAQVREDIFNETG
VLFPQEIQIIHTEKKASLSCGGQHFCLKEVSQLHLLLILRNLAPDAIHGR
YIKALIRDAQNILGISIEEIIPKKISENSLLFLIKALVKERISLRLFPKI
LEAIALYGSHDESLETLSEKIRKYLGKHIGRALWNKENTLEVITVDSHVE
RMIGDLYSQSHPLMCDKVVHQVQNLLGQSGNEGFRAIITGCESRFELRKM
IEPHFPDLLVLSHNELPEEIPISLLGSVSDEVLTL
>CCA00948 gspD, general secretion pathway protein D
MRFLRSPLVYLFGLSGLACCVPSLALTISEKAASLEKTGDFIDSSPGLAS
FNADMKEYNLQLKNLYDEAAALRESGCEDEARWKELLHKLAEVKKQIKHI
ENLWSAEIRERGDNPDDYALWHHPETTIYNLVSDYGEDNVIYLVPQDIGS
IKVSALSKFTVPKEGFEECLTQLLTRLGIGVRQISPWIKELYTTHKEGCG
VAGVFSSRKDLDLLPATAYIGYVLNSKNIDIRADQHILRKFANLDTTHID
LFGGKLWVFGSVGEIGELLKIYDFVQEDSVRQEYRVVPLTKIEASEMISI
LKAAFREDITKEDNDENLGLKVVPLQYQGRSLFLSGTATLVHQAMDLIKD
LEEGIENPTDKTVFWYSVKHSDPQELAVLLSQVHDVFAGKEGGSLASQES
MLKEATSTIHIDTSSAGTAKEGSVKYGNFIADSKTGTLIMVVEKEALPRI
KMLLKKLDVPKKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGI
SWASSGILEFLFKGSTGASLVPGYDLAYQFLMAQEDVRINASPSVVTMNQ
TPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGEEDGKSYI
TLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHVSD
SQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERHE
EAVLSSRPGENIEFRKALFAGEEAAKAAHKKLELISAIELPASQVEGLEY
DGR
>CCA00947 gspE, general secretion pathway protein E
MGDKVVLSQELLNALPYSFLKKHCLLPLKEQEDSVTIAYAKTSSLMAKDE
VQLLIKKPVLFVLKDETEIIQSLQKIYSNLEGRASDMLLSMKEGDTSPIN
EEEDLLESTDLVPVVRFLNLILKEAIEERTSDIHFEPLEDSLRIRYRIDG
VLHDRHSPPAHLHSALITRIKVLAKMDIAEHRLPQDGRIKIQIGGQEIDM
RVSTVPVIYGERVVLRILDKRNVILDISGLHMPKDIESSFKEVIAVPEGI
LLVTGPTGSGKTTTLYSVIQHLSGPFTNIMTIEDPPEYKLSGIAQIAVKP
KIGLSFACGLRHLLRQDPDVLMVGEIRDQETAEIAIQAALTGHLVVSTLH
TNDAISAIPRLLDMGVEPYLLSATIVGVVAQRLVRKICPHCKQQCAADVQ
ERAFLQSIGQDPDIPLYRGEGCSHCFRSGYKGRQGIYEFLHPDTALRSEI
AMHKPYHVLREHAEKKGFHPLLRHGVALALSGETTLSEVFRVTKRND
>CCA00946 gspF, general secretion pathway protein F
MPRYRYTYLNAKERRKQDWLEALHIQEAREKLAQQGVQLLSIREVPPRRV
RVKNSELIIFSKQMLLLLRSGLPLYESLSSLRYQYQGQRISGLLTAFMEN
LRSGGSLSQAMAAYPDVFDTFYRSAVLAGESVGNLEGCLQNIIVVLEERE
QMSKKLMAALSYPIVLLVFSVAVILFFLMGVIPSLKETFENMEPNTLTSI
VFSLSDFVCNYKYFLLGTLGLGIAGLAATRRKPFWKKWFEKTLFSLPGVK
KFFIKLGFSRFCSVVSAILRGGGTLIEGLELGCGAVPYAMLREDMKQMIH
AVIEGSSLSKELAKRPWVPKLALGMVSLGEESGDLADVLGHVAHIYNEDT
QKTLTWITSWCQPIILVFLGGIIGIIMLAILIPLTSNIQIL
>CCA00040 sctC, type III secretion protein SctC
MKIVTSNIGRKILQVINKKKGKIGVLSVLFFLDLVLLGVNSQKPPISEPR
SRAKNSQADEKSQIAACPKNIVNKTSARKSEKQSIAKNVTQNQPRHFKKS
TQTFSPGFSEGSPFAKPEVKKRPLDNRYTQTAAKKNPRFLPKQEEKTEVV
EEKSEDAQIWEDKRAYAKRAVNAINFSVKKLVEESEKKSANEEGFKIDNK
ASSQSIKTQSPDKQPSVDTVAVHADPEKDDKQLPPTLLKGKQITCADLKD
NGYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDD
LSTILLQVLKMHDLKVVEQGNNVLIYRNPRISKLSTVVTDGSAKDNCEAV
VVTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEK
VGELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEEEAFQIF
IQPGTNKIFVVSSPRLTSKAIQLLKSLDIPEMAHTLDDVTSPASALGTSG
AANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDEDFINTLNSI
QWLDVNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSW
DFGVQWVALGDEQGKVAYASGLLSNTGLANPAKATAPPLKPSPGDIPLPT
PGQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTV
IVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIGVN
LVVASTIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGC
FLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKP
KVISSFEEGTTLTNKEGYRYNWEADEGSMQVAPRHAPECQRPPALQAESD
FKMLEIEAQ
>CCA00937 sctL, type III secretion translocase sctL
MKFFSLIFKHDEVAPNKKILSPEAFSALLDAKELLDKIKEDSESYTNETK
QECEVLRKEAKDQGFKEGSEQWSSQLAYLEKETHDLRNKVKEALVPLAIA
SVKKILGKELEIHPEAIVSIIAKALKELTQHKKIIIHVNPKDLPIVEQNR
PELKKIVEYADTLIIAPKTDITQGGCVIETEAGIVNAQLDVQLAALEKAF
STILKQQNPVDEAQPKQQAPADEAQGKQE
>CCA00035 sctN, type III secretion cytoplasmic ATPase SctN
MDELTTDFDTLMSQLNDVHLTTVVGRITEVVGMLIKAVVPNVRVGEVCLV
KRQGMEPLVTEVVGFTQSFAFLSPLGELSGVSPSSEVIPTGLPLYIRAGN
GLLGRVLNGLGEPIDTELKGPLVDVNETYPVFRAPPDPLHREKLRTILST
GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG
ERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLE
RSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>CCA00038 sctQ, type III secretion translocase SctQ
MAVAAEPSTSWLKSRNDFLSSLVKTEEGVSLPPFPEDLCQQKLKEKFRLE
DTSLTIQPRGSLSAAQAVKDFGTHLLVQSFLAQPLDSGTFFFVTSEADLQ
SFMVAVFNDSSLASYFYEKDKLLGFHYYFCAELCKLLQELAWIPSLSARV
VGDARFSSKNLQESYQAVDITFGLDGNSMRFRLLFPEALCDSCQKFLSAS
NQNFDVHQLDPTPLTMSVEVGYCQLTQDEWQQVVHGSFILLDSCLYDPDT
EESGGLLTVQGHQFFGGRFLDPASGEFKITSYPNLQQEEPTKETPEVLPA
APLPGNCKLVAEASRYSLTVEEFLKLTQGSVLNFNGVHPSRGVDLILNGA
KVGRGEIVSLGDVLGIRVLEV
>CCA00938 sctR, type III secretion inner membrane protein SctR
MRSIFRTFLCMFILSAPSCFADAYDSSCSSRCNPPQSTELSAIAQPPEVK
KTYPQPAFRERVTANDVLPQEHLSAGSFSDTYPDLTTQAIILIFLALSPF
LVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV
AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKA
QIQSFYKISQKTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYL
PFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMI
SFK