Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View as list

# Rhodoferax ferrireducens DSM 15236, DSM 15236

>Rfer_0793 type II and III secretion system protein
MSSPTRAMAIASMALAAGLTFPAPGATVQAGKATAAKLPAPATAPARQAL
STTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRILLGNPENARAARPADT
PEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTNVVMLDR
DGTCTAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDT
EALTRVTDLANAYVRGQDGGGQSNQRVVNMLEVGAPQQVMLEVKVAEISK
SLLDQFGINFSRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVPFS
SVDAVIGGTVPIAGASGGNVTVTYDATTGRPTYTTSYGTVPGRGVSNATL
NMQKNDGLVKVLAEPTIMAISGQTGSFLAGGKIFIPVSKDNGSGGSTTTL
EEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQISSGGLNAVLPS
FTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRS
TEFQTDRSELVFVITPRLVKPLPVGYRLPTDGYVPPSRSELILGGKLEGQ
RTDDAASGDNPAQGGFDKEKK
>Rfer_1740 Small GTP-binding protein domain
MNHIRNFSIIAHIDHGKSTLADRLIQRCGGLQEREMEAQVLDSMDIEKER
GITIKAQTASLKYKAQNGQIYNLNLIDTPGHVDFSYEVSRSLSACEGALL
VVDASQGVEAQTVANCYTALDLGVEVVPVLNKMDLPNADPDNAKIEIEDV
IGIDATDAIACSAKTGMGIDEILEAVVARMPPPRGNPAGALRAMIVDSWF
DTYVGVVMLVRVVDGRLAKGERIKMMATGTTYNADSLGVFTPANEPRESL
EAGEVGYIIAGIRELQAAKVGDTITLIKAGTGGAAFTATEPLPGFKEIQP
QVFAGLYPTEASEYESLRDSLEKLKLNDSSLRYQPEVSQALGFGFRCGFL
GLLHMEIVQERLEREFDQDLITTAPSVEYQVVQADGTVKMVENPSKMPDQ
GRLDEVREPIVTVHLYMPQDYVGAVMTLANQKRGVQMNMAYHGRQVMLTY
EMPLAEIVMDFFDKLKSVSRGYASMDYEFKEYRAADVVKVDILLNGDKVD
ALSIIVHRSQSQYRGRAVVSKMREIISRQMYDVAIQAAIGSNVIARETIK
AMRKNVIAKCYGGDISRKHKLLDKQKEGKKRMKQIGSVSVPQEAFLAILQ
VDA
>Rfer_0548 glucose-methanol-choline oxidoreductase
MSSLQDPIRDGLKRGWKVLGGAHGARPEKMVCDVAIIGSGAGAGISAELL
ARAGLRVVIIEEGPLKSSSDFNQKEAEAYPALYQESAGRKTSDKGVTILQ
GRCVGGSTTVNWTSSFRTPLDTLSYWQQKFALPDYTNDALAPYFQQAETR
LNMGPWLVAPNENNDLLRRGAARLGIPAAAIARNVKGCWNLGSCGMGCPT
NAKQSMLVTTIPAALDLGATLLVETRAEQFELVNGRLRSVRCIAVKPNGA
PVESGVNATTIVAKHFVLAAGAINSAALLLRSNAPDPHGRLGRRTFLHPV
VMSAAIMSQKVQAWAGAPQTIYTDHFLGTQPIDGPIGFKLEAPPLHPVIF
ASTVFGCGQEQAAMLAQFPHTHVLLALLRDGFHEEAAGGQVKLRGDGSPE
LDYPLTDFVMAGARRALLAMMEIQFAAGARQVLPMHESARPCNNWTEGRQ
AVAALSMQPLLTKVVSAHVMGGCGLAGTEALGVTRPDGVHWQLDNLSIHD
GSIFPTSIGANPQLSIYGIVNRLAQGLVKRLTGQDLSLA
>Rfer_3719 Flagellar basal-body rod FlgG
MINSLWISKTGMEAQQMQLDVISNNLANVSTNGFKRASAVFEDLMYQNLR
QAGSNSSEQSQLPTGLQVGLGVRTVATSRSFAQGNLQQSGNKLDVAIQGN
GFFQVTMPDGTTNYTRDGSFQVSSTGQLVTATGLPIANGVTVPANATSIA
IAGDGTVTAQVPGTPTPQGIGSISLASFVNPAGLDPKGQNLYAESTASGQ
PNSGTPGADGMGALMQGYVETSNVNVVQELVTMIQTQRAYEMNSKAIQTS
DQMLQKLGQL
>Rfer_0120 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
MRMNLPVTQREFDYPAEHMLVSTTDSKGFITHCNRAFVAVSGYTYDELIG
QNHNLIRHPDMPAAAFKDLWSSVGRGRPWTGMVKNRRADGDHYWVQANVT
PIMENGKPRGYMSVRIKPSRQEIKAAEGLYAQMNAAQESGKLPFHLQGGQ
VHYKGVRGMAGRIRRMTLTSRLGLALGFMIALGMLPQWLDLQGMSGLGLK
LGSLLAGAALVLLWFHKNFDTAMGEAGRFADDLAGCNLTTSVATHFPPPL
DSLIRSLRQIQANLQAVVGDVRGEIASFTRSAAEIAAGSLNLSARTESQA
SSLQQTAASMEEISSTVRQTADTAAQVSAQSAISTRVATRGGEAMHQVGL
AMQAIESSSTEVREIVDVIEGIAFQTNILALNAAVEAARAGEQGRGFAVV
AAEVRALATRSAVAAKEIRTLIAQSVDQISQVTQQMTGAGDTIDEVVQSV
RQVGELIQQISNTTQEQSLGISQVNEAVIQLDAVTQQNAALVEESAASAN
GLSDSAVTLARSVQVFRLG
>Rfer_1103 ABC transporter related
MGHLALRGIRKSYGDVPVIHGVDLEVRDGEFLVFVGPSGCGKSTMLRMIA
GLESITAGDLLIDGVRANDLRPADRSAAMVFQSYALYPHMTVAENMGFSL
RMAGIKKAEREQVVQRTADVLRIMHLLPRLPKQLSGGERQRVAIGRAIVR
KPKVFLFDEPLSNLDAALRVTMRIELSRLHKELGTTMIYVTHDQVEAMTM
GDRIAVFNKGRVEQLGAPMDLYARPASEFVATFLGAPRINLITRPTQGAS
AMHMALWLATAGLAPANAHKVGIRPEHLHLRRAAHGVLAQVMLAEHLGDA
SIIHLRIDGVDELLSAKVAAHEGRVTPGEMVGVTFDVGDALAFSADGQLL
GNSMLPP
>Rfer_2257 type IV pilus assembly PilZ
MSNSTPVTPRPSVIQLAIKEKSALYAAYIPLFTEGGIFIPTAREYELGDD
VYVLLSLPEDPQRYPIAGKVAWVTPPRAANNRTQGVGILFPKDEKSRLLK
LKIEEILGGHLASDRPTQTI
>Rfer_1480 methyl-accepting chemotaxis sensory transducer
MKLDNMKIATRLILGFGTLGLLIAFMGAVAQFKVSMMNQLFAQVIAERIP
KIVLINDIKGDVTLIADALRNMIILSDTDKITKEGARIPAARARIGERLK
QLDTQITEAQGRAVLAKVTATRSQYDPLEAETMDLAAGGQVFEAKAMLLD
KVRPAQQAYFEALDGLLKYQNTLLDQSTAATQTAAASMPLVIGATLVIAL
AVGILLAVWIIRSITRPILQAVQLARGVAAGDLSMQFDASGKNEISQLLQ
ALKEMQTGLVQVVCKVLQGAQSVSSASAEIAQGNHDLSARTESQASSLEE
TTASMEELNSNVKHNADSAAQANQLAMNASTVAVTGGQVVAQVVQTMKGI
NDASKKISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR
SLAGRSADAAKEIKSLINASVERVEQGSTLVDQAGATMTEVVSAIRRVTD
IMSEISAASHQQSAGVSQVGEAVNQMDQVTQQNAALVEEMAAAASSLRTQ
AQDLVQVVAVFKLGTDDGQRVAPPQALREGSPRALLR
>Rfer_1312 protein-export protein SecB
MTDQQAPVFQIQRVYLKEASLEQPNSPAILLEQESPTVDIQLGVNAAPVA
EGVFEVTVTATVQTKIKDKTVFLVEATQAGIFEIRNLPQEQMNQIMGIAC
PQIVYPYLRGNVADLVQRGGFPPVHLSEINFQAMFEQQQQQQAGAGADAP
QLVTQ
>Rfer_3610 methyl-accepting chemotaxis sensory transducer
MKISSRLTLGFGVLGLLIALMGGVSLLKVGVMSKMFNQVIDERMPLIAAT
NEVKGDLNAISIALRNTMMMRDADGIKKEVERVESARVRINASLARLGEQ
TTSDTGQAILAKVAKARSQYDPMQAEVMGLVNAGSFFEARTLLMDKVAPA
QEAYFDTLNGLLTHLDSQLNQSTSATQDAATSMKVVVVATLAIALVLAVL
MAAWIIRSITGPLNQAVAVSRAVAAGDLSQQFEASGKSETALLLLALKDM
QAHLSTVVSEVRDDAESVATASAEIAQGDLDLSARTESQASSLEQTSASM
ELLSANVKQNADNARKANELALNASSVAARGGDVVSQVVDTMKGINDASR
RISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGR
SAEAAREIKSLINASVERVEQGSALVDRAGATMSEVVNSIRHVTDIMAEI
SIASTDQSDGVSQVGEAIAQMDQATQQNAALVEEMAASAGSLKSRAQALV
QTVAVFKLEAA
>Rfer_2672 MotA/TolQ/ExbB proton channel
MNQDLSILRLVLNASVVVQLVMLLLVVVSMASWAAIFRKLFALKRVKLLN
DTFEREFWSGTSLNDLFSAAAQNARDSGPLERIFASGMREYQKLRERHIT
DASTLMDGARRAMRASYQRELDVVEANLSFLASVGSVSPYLGLFGTVWGI
MHAFTGLASMQTVTLATVAPGIAEALVATAIGLFAAIPAVVAYNRFAHDI
DRIAIRLETFIEEFSNILQRNVSAQSASGH
>Rfer_1724 peptidase S49
MTEPNNPDKTAEVSVSTTPENLEPNQAAAPVHGEKYATKIGGEDAASGSP
GWERATLEKLAFASLTEQRLARRWRTFIRLAWLAFFIIVAWLVISQNGAS
RAALKPHTAVVEIKGEIASGADASADAIVASLRDAFEDAGAQAVVLLINS
PGGSPVQAGIINDELHRLKAKHNKPVYAVVEETCASAAYYIAVAADKIYV
DKASIVGSIGVLMDGFGFTGLMEKLGVERRLMTAGENKGFLDPFSPQTEK
QRVFAQAMLNQIHQQFIDVVKAGRGTRLKETPETFSGLFWSGQQAIELGL
ADQFGNLDFVAREVVKAEDIIDYTRRENVAERLVKRFGASIGQGAVRAIQ
STPTLR
>Rfer_3862 DNA processing protein DprA, putative
MERDELAAWLRLTLSSGVGNEAARKLLVAFGLPAKVFEQSSSTLQQVVSA
RQATALRAEPPELAPLLEQTWAWLRDTGVGSGRRQIVVLGDANYPQSLLN
IEDPPLMLYLLGAGEFMSNQAVATANKGQAATTSVVNKLALRLANSIAVV
GSRNPTPQGAVNARQFAKALGLAGLTVVSGLALGVDGAAHEGALDSLAPG
SDRLATVAVVGTGLDRVYPKRHLALAHRIAQNGLLISEYPLGTPPLPANF
PKRNRLIAGLAQATLVIEAALKSGSLITARLSAEQGKDVFAIPGSIHSTQ
ARGCHALIKQGAKLVESAQDVLEEMRIDSGLTHALDSIAVDACSTGATGS
FGTQAVLLDAIGFDPVGLDALQARCGIDTAGLQAQLMTLELDGLLVRLPG
GLFQRMSRG
>Rfer_0905 CheD, stimulates methylation of MCP proteins
MSRKKKPIDIFLQPGEYFVADAGYQIRTMLGSCVSITLWHPATRQGAMSH
FLLPTRGASKPKQTLDARYGDEALKLMLIELQRLGIPSAQCQGKIFGGGN
MFPGNLRSGALNVGQRNGEAALTLLREHGIPVMSESLFGIGHRQIVFDVS
NGDVWSHQVMPIGTDSGDKGDLL
>Rfer_3918 glucose-methanol-choline oxidoreductase
MNTTFDYIIVGAGTAGCLLANRLSKDPAKRVLLIEAGGKDDYPWIHIPVG
YLHCIGNPRTDWLFQTEPETGLNGRALRYPRGKTLGGCSSINGMIYMRGQ
AHNYDQWASLTGDPAWSWQNSLSDFMAHESHYKLDSYSSPVDGGQSAKKL
EDFKNFHGANGEWRVEKQRLRWDILDAFAQAAQQAGIAPTEDFNAGSNEG
VGYFEVNQKKGWRWSTAKAFLRPTCMNRPNFELWTSAQVVKLQLQTQLDG
SLRCSGVQVWMGGEMVNATATGEVILSAGSIGSPQILQLSGIGPAALLQR
HGIAVQVDAPGVGANLQDHLQIRTVFKVTGVKTLNTQANSLWGKAMIGLE
YALKRSGPMSMAPSQLGAFTRSDASQPYPNIEYHVQPLSLDAFGEPLHHF
NAFTASVCNLQPSSRGTVQIQSPRFDAAPAIAPHYLSTEADRQVAADSLR
LTRAIVAQPALAKYQPQEFKPGVQFQTDEELARLAGDIATTIFHPVGTTK
MGAADDPLAVLDSHLRVRGGNGGLVAGLRVVDAGVMPVITSGNTNSPTLM
IAEKAARWIIEDSTRRREG
>Rfer_1476 CheW protein
MPYRPIRRKGIEAMETMQKKTANAFQSGTPAAKTVVDGGQYLTLRLGGEE
YAIDILRVQEIRSYEEPTRMVNAPSFIKGVINLRGVIVPIVDLRLKLNID
KVEYNEFTVVIILNVRGTVIGAVVDSVSDVVTLTSQAIKAAPQFETAIDS
RFITGLANIGDRMLIVMNMEALMSNAEMGMLAAVS
>Rfer_1375 CheA signal transduction histidine kinases
MQVNAAPTGTSEPVPHDLGPLAWVLEELRKSLSGATKALRRFVRDAELAR
GSDLAALDASQLRIARQQLHQAVGALEMVGMAVPAKILRSMEALAQRFVQ
RPELCSDEAANKVERASFALTEYLEGVLKGKNASPVALFPQYRDVLELVG
NDRVHPADLWPLELRWIDVVLPQEALALGYDSLVRTRLDKAVLQIVKSGD
VAAAQTMRGISLGFAAAQETLEARVFWKISAAYFEALSLGLCPPDVYGKL
AASRILHQYRTLARGEPGISERLVQDLLFFCAQAVPAQAADAPVLAAVRA
AYGLTQTKSFDYERPQFGRFDPALLVQARKRIAAATETWSALAGGDTNRL
KVALDQFTLVTDSVLKMHPESADLVRALTQAIEKTALSGEAPAPALAMEV
ATVVLYLEAAYDDLDPTDSQMKERSASLAARMENVNAGGQPEPLEAWMEE
LYRRVSDRQIMGSVVDELRMTLGGVEKSLDSFFRNPLDKVPLHEVPSQLA
QMRGVFSVLGLDQAALATLRMRDSVEKFLVDDIDADAARAGVFEKLGNSL
GALGFLIDMLSYQRTLAKKLFVYDEDLGEFKPLMGREKTGDRTAESPSVP
GVDKVSDNALAAVEAPPESLSAAVPAEEPAPALVLAPEPVTLVLAEPADD
DDETDLKDIFLEEAREVLHAGLEAIAALADEPADMGQQTTLRRAFHTLKG
SSRMVGLSEFGEAAWSLEQLLNTWLAEQKPASSELVRLADRALHGFDRWV
EDIAAGEDAKWNAQAFRKAADGLRLDNTEVEFLLPGEEVQSPAPEETPHA
DFVSTQVIDLDLTQTFDVNLALAVDGGSGLSSAARVPDEPLALDDFDFGV
GADWTPSPDEAAVVPDISDEVETFAAELAVPVSEAADVQPEPQQASFLDL
DLEEQVKVIGSLRIGIPLYNVYLNEADELSRRLLTELSEWALELHQPVSE
TTVALAHSLAGSSATVGFFALSEMARALEHALQHVRLHVQGIPEHAQVFM
AAAEDMRRLLHQFAAGFLKEPDQALLDALKAILEIEFPAVAAGVVDSFYA
QLADEPEIAAPPGFDQVTDSVVTESEAEAEAEAEAEAEAEAESLAEPFVL
TPDAEVEHIDALDALDVDLFPIFEDEALELLPQLGGALRQWTARPDNLGA
RNEVLRVLHTLKGSSRLAGAMQLGEMTHRMESAIERMGSESLSAAQLEPL
LARFDAMQANFDQLRATPEQALILPEVSAAPQEEIAPAGLAEVAAAETEP
TKLVAPDTSGFITRASPRPGAQQTVRVRSQLLDRLVNQAGEVMITRSRME
ARLGQLRGSLGELTGNLDRLRNQLRDIEVQSESQMQSRLAQAKDTAQGFD
PLEFDRFTRVQELTRMMAESVHDVATVQRNLQRAVQGSEDDLIAQGRQAR
ELQRDLLRTRMVEFDGISDRLYGVVRQASKEANKQVKLDIKGGSLDMDRG
VLDRMAPVFEHLLRNSVAHGIEDSSLRVAAGKPMIGSIGIHLQQQSNDVT
VEFSDDGAGLDLDRIREKARANGLMPQDGTLTDDEAADLIFTPGFSTAEQ
ITELAGRGIGMDVVRSEVSALGGRIETSTERGQGTKFKLVLPLTTAVTQV
VMLRIGELVVGVSANLVEMVRRVPIADLERAYQDHVFAYGGEQVPFFWGG
ALLQASAHSNEAVTKTLPVAIFRSAGQRIAVHFDEVLGNQEVVVKNLGPQ
LSRLPGLTGMSVLASGAVVLIYNPVALASVYGERARHLSLDAAQAVDQAA
TASQASSLTSVNQAPLVLVVDDSITVRRVTQRLLKREGFRVALAIDGLQA
LERLQEEKPAVVLSDIEMPRMDGFDLVRNIRGDAKLRDLPIIMITSRIAE
KHRERARELGVDHYLGKPYSEDELIALVRQYCTAAVEA
>Rfer_0906 response regulator receiver modulated CheB methylesterase
MSRIKVMVVDDSAVVRQVVAGLLADDPAIEVIAAVADPILAIARMKVQWP
DVFVLDIEMPRMDGITFLKKIMAERPTPVVICSTLTEKGAQTSMAALSAG
AVAIITKPKLGLKQFLVDASDDLISAVKAAARANVKRLQVVEKLTADAIL
PASDRHDAMLQTTERVVALGTSTGGTQALEVVLTALPRVTPGIVIVQHMP
EKFTAEFANRLNGLCQITVREAKNNDRVVPGRALIAPGGKHMLLRRNGAQ
YSVEVLDGPLVNRHRPSVDVLFRSVARCAGANALGVIMTGMGDDGAAGLA
EMRKAGARTLAQDEESCVVYGMPKEAVKRGGVERSVPLGAIAREIMAQMA
G
>Rfer_3706 type III secretion exporter
MEPSSQDRNLPASERKLQKALDDGQVSRSRDLGHLAVLGTGALSLMALAP
LMFDRLRVLLRQQLSFDALAVSNPTTMITRMQDMATAGLIGCVIFAAITT
VAVLLSSIAAGGWVSSLKPIMPDFSRLNPLTGMGRMFTKEKFTEVLKMSF
VAAMLITLGTTYLSSTIHALAMLVLQPSRAALPMLTEWLTSGMALLLLVV
LLVAMVDVPLQSFLHKSRMKMSHQEMKQEHKESDGNPQMKGKLRQRQREI
SHGNSVGAVPKADFVLMNPTHFAVAIKYDDKTMRAPQVVSKGADLLAMKI
RDIAKNNAIPVLQSPMLARALYAHAELDQDIPASLYTAVAQVLAYIYRLK
AALRGDGPMPGEAPQPFVPPELDPLSKVVANTSAA
>Rfer_0560 flagellar biosynthetic protein FliP
MVSDQFVYSALGKGPLSKVAVVLLAILTQSAALAQSAGQLPLLMGSGPSG
VSFSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLMRQALGTQSAPP
NQVIVGLSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPFEQALAKAEDPLR
QFMSKQTRQSDLALFAKLAKLEPGATAQTVPMRVLVPAFVTSELKSAFQI
GFMIFIPFLVIDIVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLL
IGSLAASFVT
>Rfer_3866 protein-export membrane protein SecD
MNRYPVWKYVIILIALVVGVVYTLPNFFGEAPAVQVSAVKVGVKVDSSTK
VQVEAVLQTAGLAADVVTLDGNSVKARFGNTETQLKAKDAIQKALIPDPA
NPNYIVALNLLSRSPTWLTALRAFPMYLGLDLRGGVHFMLQVDMQAALTK
KAESLTGDIRTSLREKNVRHSGINRNGQTIEVRFRDAQTLEAAKEILLDQ
FADLQSVDALDGTDYKLTASIKPVAALRVQTQALKQNITTLHNRINELGV
SEPVIQQQGLDRIVVELPGVQDTAKAKDILGRTATLEVRMVDESSEARAA
EGGTAAVPFGSERFLERSGQPVIVKKQVILTGENLTDAQPGFDSQTQEAV
VNLTLDAKGARIFRDVTRESVGKRMAILLFEKGKGEVVTAPVIRSEIGGG
RVQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGF
NSVTYGFAAVTVFMCVYYVLFGLFSSISLAVNLLLLVAVLSMLQATLTLP
GMAAMALVIGMAIDANVLINERVREELRNGASAQAAIHAGYDRAWATILD
SNVTTLIVGLALLTFGSGPVRGFAVVHVLGILTSMFSGVFFSRGLVNLWY
GRQNKLKTVSIGTIWRPEPDAPVAPK
>Rfer_3676 ABC transporter related
MHLTLEGIGKKVGSQTWLYDMSLQPCSGAVTVLLGATQAGKTSLMRIMAG
LDVPSHGNVRVNGESVVGVPVRKRNVAMVYQQFINYPSLKVRDNIASPLK
LSGEKNIDQRVNALAEKLHIEMFLERYPAELSGGQQQRVALARALAKGAP
LMLLDEPLVNLDYKLREELRDELSALFAEGNSTVIYATTEPGEALLLGGY
TAVMDEGELLQYGPTAEVFHKPKSLRVARAFSDPPMNLLAASAAATGVQL
NAGALLPVAMPATTSRKFTVGLRASALRVQAQDGDVALPGKVELAEISGS
DTFVHVATLVGEVVAQLTGVHYFELGAQVTLYLSPAQVYIFDEQGMLLLA
PVRGGGR
>Rfer_3675 ABC transporter related
MARIELDLAHAYAPNPKQDSDYALLPLRMAFEDGGAYALLGPSGCGKTTL
LNIMSGLLAPSQGSVRFDGVDVTRASPQARNIAQVFQFPVIYDTMTVAEN
LAFPLRNRQVPKAQIKKRVGEIAEMLEMSGQLNQLAANLAADEKQKISLG
RGLVRPDVSAVLFDEPLTVIDPHLKWQLRRKIKQIHHELKLTMIYVTHDQ
VEALTFADHVVVMARGRAVQVGSAAELFERPSHTFVGHFIGSPGMNFLSG
QADQTGFHVADAVLVPQPGQALPPGVIKLGVRPEYVLLVAPHTPGALPMT
VAQVQDVGTHVMLSTSFAGQTVKARLPSDAGHLSHGDTVWLQVLGEHTCF
YQNEEIVA
>Rfer_1158 Biopolymer transport protein ExbD/TolR
MASVISRGRGRRTISEINMVPFIDVMLVLLIIFMVTAPLITPSVIDLPSV
GKAARQPDQVIQIIIGKDETLQMKVQEKSSPLGLKDLASAVKQAQSGVTN
SAVVISADKSIKYESVVKVMDTLQRAGVQRVGLSVQLAS
>Rfer_3163 basic membrane lipoprotein
MTDLQKRSLLKIAALTAIASAALMGCGKKEEPAPVPAPAPVASAPAPAPK
PEPLKIAFAYVGPVGDGGWTFAHDNGRKALEKEFGDKIKTSYVESVPEGA
DAERVLRDMAGQGNKLIFGTTFGYMEPMLKVAADNKDVKFEHATGYKQAE
NMRTYDSRTYEGAYMAGVIAGKMTKTNTLGVVASVPIPEVIRNINSFTLG
AQSSNPKIKTKVVWVNGWFDPPKETEAATSLINGGADVLFQNTDSPAVLK
TAEAKGKRAFGWDSDMTAYGPKAHLASSVINWGPYYIKATREALEGKWVG
GGHSWWGVKEGAIDIVSIAEDVPAETKAKVEEVKKGLADGSFSIWKGPIT
DNTGKVQVAKDAVADDKFLGGLNFFVKGVEGKVPGSK
>Rfer_1278 phage integrase
MSHQTAHSQRVFPHEFGEMYAGTTEAQFGPMQRSKAMRRRVFVFSGAFLL
CLLASLSYTFMRSPIYVANARVQITPSEQVVLGDAPAVHDGTPAFLIEVQ
VLTSRPLLEKVVKRLQEQEHLKSLDADPVLAVQGMLTVTPVAGTQVVRLR
AQGAEQTLVGPLVNAVIDVYRNEQASTGTAVSQAQLLESREALRVIEASV
AEKRKALEALKLRSNIVSSERDENQTLSRLKGLGTSLTAATDREATAAGR
VRAIEQAIAQGNRTPLAKDNPTVAAIESRLSQAKEEWRALERQFTPQYLD
MDANARGLKTRISNLEQQLEAERQKSREMALADAKEELASVRGTTQRLQQ
QLSQDRQDVQTFSRRFSDYQGMLEELKGLEKMQQTAQQKLVALESSETAR
RPRILVVEPAATPDAPWRPLYWRDAGISLAASIVLGFLAVWFVEFFNRTE
MEPQGPSTVIVPQPWMAIPQPLEPALGAGPTPETLTGGPDTRLLTQPLPR
ELRADEVEKLLACAAPENLPILACLLCGLSADEVVSLQRQHVDTATGTLK
VPGESSRAVPLPVHVLALQTHRQADAPDAPLFFKATDRPLDTEDINSVVT
SSAYDAGLEQPQSVAPATLRHTYVAFLVRQGLRFSELGRLVGRLSAEALH
HLAPLAPDAQRVSIDSVERVLPALRTR
>Rfer_3286 methyl-accepting chemotaxis sensory transducer
MNLIQPDFRARLVISFGLLLLLIVGLTAFAVSNMGGFNSGAAQFVLLFGF
ASLGVGAGLGWWLNRSMAAALAQAIGIAKRLAAGDLSEPFDADARGAIGE
LQLALQETSARMFRIVADVRAGTMAIASTSGLIAADNAALSSRTESQASA
LEETAATMEELTATVRQNSDNARQASQLAATATEFAIKGGSVVGQVVNTM
GSIRDSSRKIGDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAA
EVRNLAQRSASAAREIKSLIGDEVDKVNAGNQLVDAAGKTMDEIVTSIKR
VAGIMSEIASASVEQSTGIDEINLAVIHTDTMTQQNAALVEEASRTAAGL
QEQAVALSQTVSIFNLGAREFGNSDEAVDMVHRAAAFMATRGRDTFIEEV
NKMNKGQFIDRDLYISIYSVAGQCVGHGTNRRLLGVEALTFKDLDGKFFI
KDIMSIARREGAGWVEYKWSNPVTKEPMMKSTYFELAADLIIACGTYKT
>Rfer_3341 methylation
MKIELNPSEAMRWSGRAGMRQRGFTLIELIMVMVMLGVLAVFAAPRIFNS
DDFYARGFHDETLGLLRYAQKTAVAQRRTVCVSFPTASSATLSIASNAPT
PTTPTPTCSPALPLIGPRGESPATIPATDHGASYNGLPGNFNFNGLGQPM
STAGVLLGTQTVIQINNASNVFVEAVTGYVHD
>Rfer_2789 methyl-accepting chemotaxis sensory transducer
MKTHILRVAKYKIWVQLLATIGAALIVVWSGVIVWQGYVYREAALDQARE
FSLSMHNATMAGLTGMMVTGTVAQRNVFLDQVKQLGSIRDVRVLRGESVS
KLFGPGTAKDDSNPDALEKQVLQTGKEVIQVESDGKGEYLRAVRPTMAMK
NSLGKDCTLCHLVPENTVLGAVSMKVSLDQVNAGLADQRLKSILAAFITC
IPVLMLIYPFIRKVVTQPLEFGVKVARNIAAGDLTQKISVNSNNEMGELQ
QALQDMNESLVRVVGQVREGTDTIFGASSEIARGNLDLSRRTESQAGSLE
KTASSMQDLTSTVNQNTDNARRANQLAISASEVAVKGGAVVAQVVHTMES
INASSKKIGDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEV
RGLAQRSAAAAHEIKTLIGDSVGKVDAGSTLVHQAGTTMTEIVDSIRHVT
DIMGDIAAASVEQTAGIERVNDAIGEMNNVTHQNAALVQEAAAAAQSMQD
QAGHLEQVVGVFKLAEGPLLSLGHSRSTS
>Rfer_2350 methyl-accepting chemotaxis sensory transducer
MSLSNSLLRPGVALLQRLSLRVRLWLMALLLLLPLLILGLLLGYQSYAQQ
SGVSLAMVLGLLGFLLVLYLSAAFYQSLTLAVDVLTCVVRSSARGDLSHS
VVVPGHDELSQAGRHLESMSENFSGLVGTIRNQAVHVAQAGELLASGMGD
LSQRTEAQAASLEQASASILGLNESAQATARHSKEVDALTRRVRDEAEAG
AQAMDVAVHAIGEIQDGSKRMGEIIGVIDGIAFQTNILALNAAVEAARAG
DLGRGFAVVASEVRTLAQRSATSAREIRALIARSGDQVSVGVTRIEAVTG
SLRTVVRGIQEVAEGLDGITAASNEQSTALSEIAQAVKELDNITQRNGAM
VDQALQATVGLRDRASNLSEAVAAIKLRRGTADEAHALVKRGFDLISQIG
LSNAAARFHDPHGGFRDRDLYLFAFDRRGVYQVFGSTPDRVGKTVYDVRG
LDGDHILREGFDAAERGGDWIDYEVVNPVTGMVDEKTSYILPLPDGRLLG
CGVFKPKGGFSLQVS
>Rfer_0569 MCP methyltransferase, CheR-type
MALVRTDVRPNAAVRMPVGGVSDAGGADMQGREFAWTDADFDRVQALIYQ
RAGISLHDGKHAMVYSRLSRRLRDTGYQSFKDYLGWLETHDGPEWQEFVN
ALTTNLTSFFREQHHFEIFASHLKSRPAGTAWRVWCNAASTGEEPYSIIM
TALEALGPQANLTLTASDIDSKVLASAAQGVYRLEGLKGVNEERIQRFFL
RGKGGNAGMARVKPELQRMIEFISVNLIRDDWPFRQPFDVVFCRNVMIYF
DAPTQRKVLERIHRVMVPGGLLFVGHAENFSESRDLFVLKGKTVYERR
>Rfer_3715 flagellar basal-body rod protein FlgC
MSMFSIFNVSGSAISAQSQRLNVVASNLANADAVAGPDGQGYKGRQVVFE
TVPMGSDASSGVRVSSVSESNEPLRKVHNPSHPSADADGYVTQSNVNPIE
EMVNMISASRSYQNNVEVMNTAKTLLLKTLQMGQ
>Rfer_0901 CheA signal transduction histidine kinases
MNLDDALQTFVIESRELLEGMEDALLAIEQAEEKDELVNAIFRTAHTIKG
SAGLFGLDHIVAFTHVGESVLDQVRANKLQIADQLVVLLLSCRDHIAALI
EAVAAGQIEPDAELQQQGEPLLVQLRGYLAPPAATTPASTQVTTGMTPGI
DPIQRINGNTGVDHWHISLRFGPDVLKNGMDPLSFIGYLQTLGKISGIAT
LPDAIPSADLMDPETCYLGFEIALQSEADKATIENVFEFVRDDCRLRILP
PHSLIADYINLINEHPGDVARVGEMLVRCGTLTAQELDTALNTQADTPAK
PIGTILIEQGSVRPEVMDAALTKQKQVKELGTVESRSIRVDADKLDQLIN
LVGELIIVGAGVNLIAARVKIAELQEATSKLSGLVEEVRDSALQLRMVKI
GATFNRFQRVVHDVSRDLGKDVTLVIKGEDTELDKTVVEKIGDPLMHLVR
NSMDHGIESAEVRAQRGKPAQGTLTLNACHDSGSIVISVQDDGGGLHRER
ILAKATERGLVEPGHHMSDAEVYALIFEPGFSTAEKVSNLSGRGVGLDVV
KRNITALRGTVSIDSTEGVGTTVTVRLPLTLAIIDGFLVEVGKSVFAIPL
DMIEECVAYSAEPGHDYTNLRGQVLPFIRLRELFNVAEPITRRENIVVLK
HAGQKAGLVVDTLLGEFQTVIKPLAKMFNQVKCVSGSTILGSGEVALILD
VPQLVQQASVNNSNASAWAG
>Rfer_3702 MotA/TolQ/ExbB proton channel
MYILHGGNIGVILKALPFELVTIFGGALGAFAVNNQPKVLRATLKLIPQA
VKGSKYTKARYLELMALLYDILQKARKEGLMAIEKDVEEPHGSAIFKKYA
TVGSDHHVVEFMTDYLRMMVSGNLNAHEIESLMDSEIDTHHAEAHAPVAA
IARLAGALPAFGIVAAVLGVVNTMGSVGQPPAVLGGMIASALVGTFLGIL
LAYAVVEPLGGVLEQKIEDSAKELQCIKTTLLASMQGYNPATAIEFGRKV
LFSTERPTFLELESYVRGKK
>Rfer_0544 General secretion pathway protein F
MPVYSFEALTADGETRKGVIEADSAKGARSLLRGQAMVPIKVESVGAQAA
GQDGAGGAGAGRSLRRRVFSATGLAIWTRQLAGLVSSGLPLERALTSLSD
EAERDNEHHLVALLRAEVNGGATFAKALSQHPREFTPIFIAVIGAGEQSG
NLGLVLERLADDLEEQQALKAKLIGAALYPAIVSLVAVVIVLFLVTYVVP
QVAHVFAGSKRALPLLTVIMIGTSAFVRSYGWLMLVAIIFGVIGARLALA
NALFREKFDAAWLNLPILGKLSRSYNTARFASTLAMLAAAGVPILKALQA
AAETLSNRAMRTDALDALVLVREGAPLASALAQKKRFPGLLAMFARLGEQ
TGQLPTMLQRAAKQLSVEVQRRAMQLATILEPLLIVVMGVVVMLIVLAVL
MPIIQLNQLVK
>Rfer_0633 flagellar protein FliS
MPINKVTNKMERSMFTSVSSRSASAYQRVSVETAVSQASPHQLVAMLLDG
LLKNVGAARAALKRGDIAAKGEKINKAVRIIDEALKPALNLAQGGDIAAN
LNGLYGYCAIRLTEANLRNDDAALADVLRVIEPLADGWKQIGGQASSALS
SSH
>Rfer_3119 methyl-accepting chemotaxis sensory transducer
MFKQFFKSMSLARRLSLGFTSILVLLLAVALTSAYAIRLLGQHVQHIVEV
GNRKTELENKLMGSISDLAIRSRSVVLFTGKQLAIEIQSVKEAELSFLSI
EKELIALLAGGNATEQERQLMADISLAAKQVLPETEGVVKQAMDADNVSA
VMSLMKRVLPPEVVLRRKVSELIELQRKQTEIANGEVVSLQKKAMLVESG
LVLLALLLGGLIAWRITVSVTGPIGRAVVVAERIAMGDLSSQIEVRIFDE
TGRLLQAIASMQNKLKTLVGGIRRAADSIELASSEAACGNLDLSHRTEQA
ASSLQETAHSMEHLTGIVMQSAESAKQANQLASSAANVAARGGSLVSEVV
STMDEINISSNKISDIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAV
VASEVRTLAGRSAQAAKEIKSLIGASVERVERGTRLVADAGRTMTEIVTS
VQRVTDTLGEITAAATEQSQGIRRINTAIASLDRMTQQNAALVEEGTAAA
ESLKDQAAQLSVAVNTFKLDRLGDVAAPEIYRVSSGTAVKRLARDPAGHE
LQMA
>Rfer_3724 flagellin-like
MTSSLTRLGSANTYDNALRNLSMRQSALSNLQENLTSGKKVVRASDDPTG
AAQAERAMTRISRIATDQRALEAQRNSIAMAEGTLGDVTDALQNFRELVV
SAGNGVLTSAERKSITIQLQGLRDQVFSLANRKDSNGQPLFSALGSALAP
FVGPNAPPQDYAFNGLPGQSASSEVAIPFALDGDSAFMLQTNRDGVYNVS
LGSGTTNLKTGPATLNPPTAATGASYTISFTSVTAAAGNTTASYDIVDSG
SGAAVATGTKTYSTGQSFTVTEMPGLSLTITGTPTVADTVKVESSPSLFS
VLDDAISSIGSASSNATASQAVSQALGNIDIGMGRVSAVRGQAGDLLNRA
DRITSNQEARSIQLEADRSRAEDLDMVKGIADFQNQQTGYQAALQSYAQV
QKLSLFNYIS
>Rfer_0557 flagellar motor switch protein FliM
MSESFLSQEEVDALLEGVTGESQKLVEEVHEKGEVRSYNISSQERIVRGR
MPTMEIVNERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPT
NFNIVAIRPLRGSGMIVCEPSLVFGVIDTLYGGIGKFQARIEGRDFSATE
QRVINRLVDVITEEYKKAWKGVYPLELEYQRSEMQPQFANIATPSEIVIS
TSFQLEIGEIAGSIHFCMPYATLEPIRDILYSSTQGDSIEVDKRWVNVLT
QEIQAAEITLVAELARADATVEQLLAMKTGDFIELDRPSRIEVTVEGVPV
FECQYGTHNAKYAIRIDKSLRGNDLNWKG
>Rfer_3361 type II secretion system protein
MATYAWRGRNVRGEAVQGQLEAMTEGGVADQLMSIGVAPVHIAIAPEKTE
TATDNWFARLNRKPVVVEDILVFSRQMYTLNKAGVPILRAFAGLEASATK
PAMVDMLKDIRASLDQGRELSAAMARHQDVFGAFYISMIRVGEMTGRLTE
VFLRLNEHLEFERDVRERIKQAMRYPIFVLIAMAIAVVILNIFVIPVFAN
VFAGFHAELPLITRGLLAFSAWMLAWWPLLLAGAIGAVVLIRGYLNTTAG
RYRWDARKLKLPIVGDIVLKATLARFARSFALSSQSGVPLVQALTVVAQT
VDNAFIGSRIEQMRDGIERGETITRCAAATGVFTPVVLQMIAVGEETGEL
DNLLFEIAGMYERETDYNIKGLSAAIEPILLAVIAVLVLLLALGVFLPLW
NLGQAAMGKGGG
>Rfer_3598 SecE subunit of protein translocation complex
MATTQVETVSTGADKAKLATAAVLVVAALAAFYLFGKQGQLVQWGALLLG
LAAAVVVFFTSEPGKALYAFGQDAWREVKKVVWPARKEAIQMTAYVFGFV
LLMALFLWLTDKTLEWLFYDLILGWKK
>Rfer_0621 conserved hypothetical protein
MSDAQNAGFGKFIPGFDFLQNLAKGATETVPQMPNLANWIAPTLNVEELD
KRIAELKAVHFWLDQNSKALGATVQALEVQKMTLATLKGMNFNIGDVANA
LKLKAADSVYSGVQRVTEKAASTAQTISEVASDAEDVAKKVRKAAKPVTD
MAAGLIDPMQLWTSLTQQFGQIAASAMKDAGKATAMDATRNMAAGFAKEA
VKATKKVASNAGAARAAAKKAPKKAARKTVRRST
>Rfer_0413 outer membrane efflux protein
MQHVLRAGAIAAVLVMAVPAGVLAGEALPGASLQTLLELAQASNPEYTSM
RFEAQAAAERVKPAGALMDPKFRIEWMDITKMGEQNPTLWPSDVGSTKYT
LMQDIPWFGKRDLKRDIAHFDAEGSQGKALGTWLELAARVKTLQAQRYYL
RGNKELTQEILDLMARLEQVAQSRYAGGLAAQQDVIRAQVEQTNMRNELV
MIESESLQVDARLNALLARPAMAALAAPESLRPLPAQSLLDAAKLEERVR
NRNPQLFVEEARIQAAQKSRDLTYKNRYPDFTLSISPTQTQTNVKEWGLM
LEVNIPLQQSSRRAMEREAEAMLSAARARKEAAANQVLAELAQNLAAIEA
ARRTELLASSSLLPQADLTFSSAMASYENGKLDFATLLDAQRQIRQAKQS
RIKAQFEGQMRLAEIEKLLGEDL
>Rfer_2904 Prepilin peptidase
MLVATWFDATVLGVLGLLIGSFLNVVIYRLPVMLEAQWKAECAEMTGKET
TSAEKFNLAVPRSRCLKCDHQIQWYENIPVFSYLFLRGKCSNCKAPISLR
YPLVELATAALFVYCGWKWGATPTALVWCGFGATMLALGCIDWDTTLLPD
DITLPLLWAGLIAAALQWTPVALPEALWGAVAGYVSLWLVYWAFKLVTGK
EGMGFGDFKLFAALGAWFGWQALVPIILMASVIGAVIGIAMKFSSGLREG
GYIPFGPFLVGAGLTAMIFGPGSILRAFGL
>Rfer_3013 MCP methyltransferase, CheR-type
MNRNGLAPRERPFSIVGIGASAGGLVALEQFFSQVPPDSGLAYVIVQHLD
PKREGMLVELLQRHTPLPVAEVQDQTLVEPNHVYVIPPGRDLSLLKGVLH
LMVPPELRGLRLPIDFFFKSLADDQQQNSIGVILSGMGSDGTQGLRAIRQ
AAGACFVQTPASAQFDSMPRSALDAGVADVVAPAEELPLKIMAYAGRSQL
AVAADVRLQSDQKDDGFLDKVIVLLRNQTGHDFSFYKRSTILRRVERRMG
LHQLPHVSEYLRYLRENPDESELLFNELLIGVTSFFRDSSVWNQLKNEVL
PVLLARHPQGAALRAWVPGCSTGEEAYSLAMVFKEALELAKPEPRFTLQI
FASDLDRDAIATARNGIYPRSIAADVSEERLARFFVEDAAGYRINNEIRE
MVIFAEHNLVVDPPFTKLDLLSCRNLLIYLEAELQATLMQLFHYSLGAGG
FLLLGSAESIGAATELFAPLPGKSRLYRRLDAPDRALRVGVPAAFMQAHG
KSGAGAAALTSDGSATTPSLKVLVETLVLQRYAPAAVLVTEKGDALYFSG
KTGGYLEPAAGKPSLNLFAMARDGLNQALSEAFHRALRDKTLATRKNIKI
NSETGVQYVDVIVQPLQEPAALRGLALIVFFDVPKPRHRLSQAKGVDLAI
DGTQVETLLQALRQSREDAKSMREEMQTTQEELRSSNEELQSLNEELQSA
NEELTTSKEEMQSMNEELQTVNYELQAKVADLARASNDMKNLLDSTEIAT
LFLDDALHVRRFTPQTTRVIKLIPGDMGRPITDIVSDLVYPELVQDAHDV
LRTLVFCEKDVPTVDDRWYKVRTMPYRTQENRIDGLVITFSDISKSKKLE
AELRATQARLAAQPDNSKPQGNGDGIS
>Rfer_1120 MotA/TolQ/ExbB proton channel
MQINIARMFKSFACTLGLVLTLVPGVVQAQSTVATTASSAAPAALPVLTD
VKAVDPSAAAIKKTPDALDNPYGLEALWKTSDAVAKTVLLLLLIMSVGSW
YIMIVKVLEQAKMGRQAKAAVKNFWTAGTVQQGAEALEKNSPFRFMADAA
TNAIKKHEGLMGHIPLNDWMAMGIQRAVDRIQSNTQGGLAFLATVGSISP
FVGLFGTVWGIYHALTAIGISGQASIDKVAGPVGEALLMTAIGLAVAVPA
VLAYNWLVRRNKAVMDEVRAFSSDLHAVVLGSVAKA
>Rfer_2956 twin-arginine translocation protein, TatA/E family
MGFSTTHLLIFLVIIIVIFGTKKLRNIGSDLGGAVKGFKDGMKEGSDKAA
DAPAAAPQQVASSATAAKETIDVEAKTKA
>Rfer_3721 flagellar P-ring protein
MQFFNTLHPTRPHWLLAALCLIASLLGAGTAQASRIKEVAAVEGVRSNQL
TGFGLVVGLDGTGDQTTQMPYTAQGLTNYLQQLGITLPEAQVSKLQLKNV
AAVLVTAALPAFARPGQAIDVNVSSMGNAKSLKGGTLITTPLKGADGEVY
ALAQGSLVVAGAGAAAGGSKVQINHLSAGRIPGGAQVERIVPTPLLEGAS
ITLGLQASDFQTARRVAEAINRRFGAHSARALDGRTIDVTAPSESNARVS
FIAEMEELQLESSIPSAKVVINSRTGSIVMNQAVTLGECAIAHGNLSVSI
STTPVISQPNPLSTGGKTVVAEKSNIQIRQEPGMLIQLPKSTQLSDVVRA
LNALGATPQDLLAILQAIKAAGALNAELEVI
>Rfer_2357 CheB methylesterase
MGGSAGGLDAYIRLLKNLPPDMGVAIVVVNHITLMPTQLHQVLPPFTKMP
VELITENLVIEPNHVYIIPANRDLHVDGEVFQLRPISKPRGWPDVITVFL
KSLTQYWDGKLIAVIVSGFDGDGAATLRGIKEVGGITIAQKPGHEA
>Rfer_2958 Sec-independent protein translocase TatC
MTDPVNNTDELAGTEQPFVAHLIELRDRLLRSVYGIAAVLAVLLFYPGPS
HLYDLLAMPLVKALPEGSRMIAVGVVSPFLVPIKVSVLAAIGLSLPWILY
QIWAFVAPGLYKHEKKLVLPLVAASTVLFYMGAAFCYFFVFGQAFPAIQR
MAPISVAVSPDIEAYLDFVITMFIAFGVAFEVPIVVVILARMGIVTVAQL
KSFRTYFVVGAAAVAGLVTPPDPVSMVALLLPMVLLYEVGIFSAKVFIKH
TAAPDDAADAANV
>Rfer_3174 MotA/TolQ/ExbB proton channel
MDRDAASFIFLKANTVQIKTSRMIASGACTLGLVLTLVPGVVQARSTVAA
TASSAAPAALPAITDVKPVDPSAAAARKAPDAVDNPYGFEALWKTSDAVA
RTVLLLLLIMSVGSWYIMIVKVLEQAKMGRQAKAAARDFWSADTVQQGAA
ALEANSPFRFMAEAATTAVKKHEGLMGHIPLNDWIAMRIQRAVDRIQSNT
QGGLAFLATVGSISPFVGLFGTVWGIYHALTAIGISGQASIDKVAGPVGE
ALLMTAIGLAVAVPAVLAYNWLVRRNKAVMDEVRAFSSDLHAVVLGSVAK
T
>Rfer_3712 anti-sigma-28 factor, FlgM
MKIGQPSDNPIPVSSNATPAPPKGGQSPAATATATAAQNAQSAGVAVTVS
TLARSLGADKAGEASVIDAKKVASVRSAIEQGTFVVNAEAIADKLLANAQ
EMLNRTTS
>Rfer_0553 ATPase FliI/YscN
MNSDASVKWQLFMDSARKRVSTGSTLALRGTLTRLTGLVLEASGIRVPVG
SQCLVTMKAQTPVLAEVVGFSNDRAFLMPAGDVHGLSSGASVEPAAAYVA
VPRLGERRQTERISGYATLRLPLGDGLLGRVVDAQGAPMDRRGPIEDVTA
VPLDRQPINAMDRAPVRETLDTGVRAINALLTIGRGQRIGLFAGSGVGKS
VLLGMMARYTKADVIVVGLIGERGREVKEFIEDILGDDGRARSVVVAAPG
DAPPLLRMQGAAYATAIAESFRDKGKHVLLLMDSLTRYAMAQREIALAIG
EPPATKGYPPSCFAKLPQLVERSGNGLHGVGSITAFYTVLSEGDDQQDPI
ADAARAILDGHIVLSRALAESGHFPAIDIEQSASRVMHNVVPQQHFEMAR
RFRAINSRYEKGRDLVQIGAYVGGSDPALDEAIQLHDDMARFLQQDMLEA
STLDASVCAMAKALDHEEAVA
>Rfer_3698 CBS
MSDPHPSRPDREDKRTFLQKLAEFIHPGPDSTDELIATLAEAEDNDIIGA
ESRRMLEGVIRMADMTAGDVMVPATQMELVNIADPYDVMMHGVIDTAHSR
FPVYENERENIIGILMAKDLLKLQRAPELNIRALLRSAVFVPESKGLNDL
LRDFQANRNHMAIVIDEFGRVAGLVTIEDVLEEIVGEIEDEFDIAEDEGD
IYGLADRTYRVSGDTPIERVESAFGVRFTGTDPDDEFDTIGGLIAHEMGH
VPKRGERHVLAGFNFVVMLTQGGAVKWFKVSPVPDESA
>Rfer_2507 methyl-accepting chemotaxis sensory transducer
MSFNNLRVATKLWLGVGVIIAALAMLIGFSAFKLASLQADSDAKQSQLNT
RVKSVTAWAGLTETNSIRTMALITAYDPGVEAALATAIAATSAKISVVQK
SLEAMPLGKDELAQMQKISGARKLMSDARGKALKLKTDGNSEEALATVKE
QYTPVVTAYLATLRELVDMEEKAMATFLEEASQSRASIARILAAFFVLLF
VGILIGAGRLIRSIRQPLVQANELASSIAKGDLSMQIDTSRGDEFGELLK
SLAAMNESLGRMVHQVRQSTDSIATASTEIATGNNDLAQRTEQTSSNLQS
TASSMDQLTTNVQQSADNARQASVLAANASSVAEKGGAVVQQVVSTMEEI
NVSSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR
SLAQRSAEAAKEIKTLIGTSVDKVASGTKLVSDAGTTMSDIVQSVRKVAD
VIGEITAASSEQSTGIAHVNQAIGNLDQMTQQNAALVEESAAAAESLREQ
ASQLAQAVSVFKISGSVVTVQSRPTRDITPRAESLPYKRPQPPAKPQPAS
AALGRTRAAVPARKSLALSAGKKPAQAPTQPADADWETF
>Rfer_3878 twitching motility protein
MDITQLLAFSVKNKASDLHLSSGLPPMIRVNGDVRRINVEALDHKQVHAM
VYDIMNDSQRKVYEEFWEVDFSFEIEGLARFRVNAYNQQRGAGAVFRTIP
SKILTLEQLNAPKIFADLALKPRGLVLVTGPTGSGKSTTLAAMVNFLNET
EFGHILTVEDPIEFVHESKKCLVNQREVGTHTLSFAAALRSALREDPDAI
LVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRVIDVFPAEEKE
MVRAMLSESLQAVISQTLCKTKDGQGRVAAHEIMLGTSAIRNLIREAKVA
QMYSSIQTGNSVGMQTLDQNLSDLVKRNIISPSEARSKAKIPENFPG
>Rfer_0659 lipopolysaccharide biosynthesis
MDELISQLATAARGMWKHRWLGLLVAWAVTAIGLFVVLSVPDKYEATARI
FVDTQSILKPLMSGLAVQPNVDQQVGMLSRTLISRPNVEKLVRMADLDLK
TQSKSEHEALIDRLMKTLEIKNVGRDNLYVLSYRDTSPDKAKRVVQSLVS
IFVESSLGDSRKDSKTARRFIDEQIQTYVTKLEEAEARLKQFRLRNIELQ
NADGKDMAGQIGAVSSQLSQARLDLREAENARDSAKRQLDAEKDQNANIT
SRSLLQESAMQSSTPEIDARIDAQKRQLDGLLQRFTEQHPDVVGTRRLIQ
ELESTKAKELQELRKTALANPAAASANSMAYQELHRLLASSEVQVAALRA
RVGEYETRYARARELMKTAPQIEAELAQLNRDYDINKKNYNDLVSRRESA
AMSGDLDSAAGMADFRLIDPPRASPQPVAPNRLLLMPLALLAGLGVGLVA
AFAASQLRAVFHDGRSLKETLGLPLLGVVTLVLDDGAVLREKLELKKFWA
ASGGLIGVFLTGMIIFSVMSGRLG
>Rfer_0470 CheW protein
MTHTAAPLQIDTYLPYMRDVIRCEQSLHELNLMWRMIESSAKMNCPVEAK
TILPTMAATREGFNRLEQELVASLVNEKIATVLDEIGTKAQYVIDIVVRN
LYERTADVGFLATDNELCAFVAGLTDQQSAIRQRLRAYRNKYTVYDEIML
LDTAGNVLVQIDESTPLEGSVDPLLAQTLASNTYVETFRATDLRPAKKQA
LIYSRRMLHPDTGVVVGVLCLCFNFEQEMAGIFQSHRDPAGRSNMMLLDG
SNRVIESADALWIPPGAVVPVNTASNPALMMFAGREYLVRTYPAGGYQGY
PGPPGWQGQVMIPVDVAFTGGARSTLTTLDPGVAAGLLSHAQSFSPPLYE
IMAAAENIQRVVWNGQVMTTGQRGEQMKLKTILDQISETGARSNELFSKS
IADLYETVLASSLRDSEFVSHLLVDLLDRNLYERSDDCRWWALTPELQAA
LAAPAAPQRDGEMVERITGILEYINRLYTVYTCIFVYDASGCIVASTQPD
QDGGTVLGTFIEADTLAQVRALRSEQDYCVTPFAPSPLYGGRPTYVYHAA
IRDPNDDASVVGGIGIVFDSKPELDAMLRSGLGHKAGMNALFVDRRGCVI
ASTDPTRPVGTRLEMDQTLLALPNGSSASRIVIHDGHYAIMGCTVSSGYR
EFKVSDGYREDVLALVFDSFGEVRERPGVGHQGHTVLQSDLTAIGGFEFA
TFFVDGALFALPAEHVLEALPAAKISTVSRGERKACIGLLGLQHEAVNHG
SVWVFDLGYLLHGQPSVIDKSSQVIIVRYGGQTIGLLVDALHDVPAFNQS
QIMHSPFTGQADGALVKHFIKANGGQLLIQTVDVSSLFAVLMNRKAMA
>Rfer_0567 CheA signal transduction histidine kinases
MAEAHQESSSTAADFDLSQFYQIFFEEAAENLDLMEQMLLSLNLETADDE
ELNGIFRCAHSVKGGAATFGFSDVAELTHQMESLLDRLRRHELQPNSAMV
DVLLESADASRGLLARHQAGGEGDAPPTADLVRRIKALVAGEVAQALPSV
APPQPLPTPVVAPAIVAVQSKAVLAPTPQPSNTTRSLEIRIGPLDHPAQA
DAIKELFRDIEGLGDITVVACNQADTRVFAVETSSTDADLLDLFAFHVSR
EQVSIKEVDNVAVMPETGLGFFDGAAGSHETSLYDDPPPGAPLAPAPGFG
FFDGAPGAPVPVAAATGVAGGLSGSTASARGGGKATSPVVQPEAATIRVA
ISKVDQLINLVGELVITQAMLAQNSRALDPALYQQLLTGLTDLDRNTRDL
QESVMSIRMIPMSIVFSRFPRMLRDLAGKLGKKVDFVTQGEATELDKGLV
EKITDPLTHLVRNSCDHGIEMPADRIRAGKSETGTITLSAAHQGGSIVIE
VRDDGHGMSREKILTKARERGMDVSDQMPDSEVWMLIFAPGFSTAEVVTD
VSGRGVGMDVVKRNIAALNGTVEIDSVEGYGMKVSIRLPLTLAIMDGMSV
GVGDEVYILPLSSVVESFQVKSDAVSTVGQGAQLVKVRDEYMPVIELEKV
FQVPRFDFDKSSDIMVVIEADGSRVALLVDELLGQQQVVVKNLESNYRKV
PNISGATILGDGKVALILDTGALVRRSRH
>Rfer_2481 methyl-accepting chemotaxis sensory transducer
MKLSLKLPLAFAWAQLFLFCAALFGIYSLNQSLGTFENAVAATANTNHEA
QVADMALVFKTQVLEWKNVLLRGSNAEKMSTHWAGFVQHERDVAERAKKL
MAALPEGESRALVAKFAQAHTQMGENYRKGLEFFKAANMDPAGGDNSAQD
MDREPLKLLEQAVARIKADNAAVLAQAAASGRRATLISVVLMLLVCAGGI
VFGILLSRSIIKQLGGEPQDAVNLAQRVAQGDLSEENMLKAGDTSSLMAH
LDLMQASLARVVANVHRGSEGLQVASAEIAQGNQDLSARTESQASALEQT
ASSMEQLSAAVKQNADSARQANQLALSASAVAVKGGEVVAQVVDTMKGIN
DASRKISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS
LAGRSAEAAKEIKSLINASVERVEQGSTLVDQAGVTMAEVVSSIHRVTDI
MGEISSASSEQALGVSQVGEAVTQMDQSTQQNAALVEQMAAAANSLKSQA
QDLVQTVAVFKLVSVDSPRRAPPPAALRSNQPAPGVRQPVARRALAAPSS
GAALKNSAKAPAKTLAKDAPAGEADWEAF
>Rfer_3155 tetraacyldisaccharide 4'-kinase
MTQPTQSSTWQQHLTRAWTHRGWLAWLLWPISLLYGVLVKLRRSLYQAGI
FKSERVPVPVIVVGNVVAGGAGKTPVVMMVVRHLQARGLQVGVISRGYGR
QTHDCREVCSDSAITDVGDEPALIQRSTAAPVFVASRRVDAARALLARYA
QTQVIVCDDGLQHLGLQRDLEICVFDERGVGNGFLLPAGPLREPWPRAVD
LVLHTGTPPAFAGFSAQRTLSRYALMADGSQQALGDLAGPTCLCNKPLLA
LAAIAKPENFFTMLRAQGLTLARTLALPDHYGFDSWSHNDYEGYTLICTE
KDAVKLWPLEPDALAVPLVVTPEPAFLAQLDARLDRLLPTDPSPTLSLAH
GHTTT
>Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT
MTGPFEGHNIARFTLATLAVVMLGACAGLPTPGDAVSNAPAATAAPSQWQ
APLPHGGQLTDLARWWQQFDDPLLTQLIDAAQAVSPTLASAQSRIAQARA
ARVSAAAALGPTLNANASAVRGRQDLSLPLGNTTSVGLQAAWEVDLFGAN
AAARDAAQARLAGAQASWHDARVSVAAEVAGAYVSLRACEAQLVQTQIDA
NSRADTARLTELAAKAGLQATASVALARASAAQGRNLLTQQRALCDLGVK
SMVALTGVAEPALRSQLAPASARLPQPAQIVVASIPADVLAQRPDLFSAA
REVLAASADLSQSQAQRYPRIVLNGAIGAARFSSAADTLDGPVWSLGPVS
VVMPLFDGGARRANVEAARARYVEAGVIYASRLRVAVREVEEALVALHST
AARGSDALVATEGFAASYRAADERFRSGLASLFELEDARRSAVQAQSALI
ELQRERVMAWISLYRALGGGWIADAQSAAVTATRN
>Rfer_0757 Biopolymer transport protein ExbD/TolR
MSFGRLERTPGPKPMSEINMTPLVDVMLVLVVIFIITAPLLASSIQLDLP
KAQASPVSAAPKFVTVVVDRSGQTFLDDQVLTLTELATQLAQTARLNPDL
EVQLRADTAVPYGRIVDVMGIAQKAGLNRIGFVTNPKPPVAP
>Rfer_3720 flagellar L-ring protein
MNMTQRTIRLRERARTLWGGALTLVLGLTLSACGSLPQPVNVDFVQADTA
PPMAAAPAASQAASGSLFQKVSYRPSFEDPRARMIGDVVTIRIVENVAAS
QVSKSTANRTTSGAASISAFPLVSPADLLNLKAGVGTSSANDFSGKGGTE
SANTFTGTITATVVRVLPNGHLVVTGDKQIGVNQNVDVLRFSGTIDPHLI
QPGNLINSSQVANARIESKGRGAQAEAQTVGWLTRFFFSFLPF
>Rfer_3707 flagellar biosynthesis protein FlhA
MNTQLKVFQQWFGGNSALIKGAAAPMLVVAILAMMVLPLPPWLLDTFFTI
NISVALMVMMVAAYMIRPLDFAAFPAVLLLTTLMRLSLNVASTRVVLLEG
HTGPGAAGAVIEAFGHFLIGGNFAVGLIVFSILVVINFVVVTKGAERIAE
VSARFALDAMPGKQMAVDADLNAGLINEEEAKRRRAEVSEEADFFGSMDG
ASKFVRGDAVAGILILLINIFGGFMVGVLQHGLTAGQAADTYILLAVGDA
LVAQIPGLLISVAAAMVVSRVGKDHDLGRQIVDQMFISPRVLGITAAIMG
ILGLIPGMPHVVFIGIALVLGYGAWELAHKPLPPDPAATAPVVTSDGEAS
WDDLQPVDQLGLELGYRLIALVDKTRQGDLLTRIKGVRRKFAQEVGFLPP
PVHVRDNLELKPSGYRITLRGVIAGEGEAFPGMYLAINPGGITTPLIGTA
TTDPAFGLPAHWIDEQQKEAAQMAGFTVVDSETVMATHLSHLMQVQASKL
LSRTETQQLVEHVSKLAPKLIEEVVPKMVPIAVFQKVLQLLLDESVHIRD
IRTIIESLAEHAGSVTDPAELARRVRIALSPAIVQQIYGPARELNVIAID
PPLERLLVQALGNTAGPALDPGVADIFSRNAAAVALKQEEIGIPACLLVP
DQIRSAISRLVRRVAPRLQVLAHSEIPESHTIRIGPILKGASS
>Rfer_2149 protein of unknown function DUF107
MKYALAMAIMAIALLVAAQERVATPDKPVPRAVAAAVPLLTVNGPIGPAT
ADYIARGLHKAANEHAPLVVLQIDTPGGLDSSTRQIVKDILASVVPVAAW
VAPGGARAASAGAYIVYASHVAVMAPGTNLGAATPVQMGGLPGAPQQPQP
TPANPAAPQGKASEPKDATDTVRPAADAMTRKIVHDSAAYLRSLAQMRGR
NVEWADSAVRDGVSLSAEEAQNQRVIDFIAADLPTLLQRAHGRTVQMSDG
VARSVVSNGMRTVAMEPDWRTRLLGIITDPTVAYLLLLLGIYGIYFELMS
PGFGVPGVAGSISLLLGMFALQMLPVSYAGVALIVLGFVMLVAEALLPSF
GALGIGGTIAFVIGSIMLIDTDAPGFGLPVGLIATVAVVNGLFVLVMFRL
ALKARKRPVVSGSEELIGATGEILEASPHDAWMRLHSERWRVRSDSALHR
GQRVRVTGREGLVLQVEPMAAAPTAGAAPRRSLRASGP
>Rfer_1284 ABC transporter related
MASITLKNVTKRYGHGKTATPVIHGISAGILDGEFVVIVGPSGCGKSTLL
RMVAGLEEITSGDISIGNRVVNKLEPSERDIAMVFQNYALYPHMSVFDNM
AYGLKIAKVPVDEIKTRVDKAAKILEIGPFLQRKPRELSGGQRQRVAMGR
AIVRQPQVFLFDEPLSNLDAKLRAQTRLEIQKLHRELGITSLFVTHDQVE
AMTLAQRMIVMNAGVMEQFGTPEEVYTRPASTFVAGFMGSPPMNLLKNAP
GASANTITGVRPEHLDIASSGWALQVEAVEMLGAERLVYGRWAHGAGDEL
VIIRNEESHAVPTLGSTLHVTPRAGKLHWFDASTGKRRESAGAHP
>Rfer_0790 peptidase A24A, prepilin type IV
MTIGFLCPSIAIMIHTLLAVMLLTVVIADLRSRRIPNTLVLTGLVLAFIA
HTIALASGSVPLAGSTWWAPLAGLLTGLLPLMPLYFLHATGAGDVKLMGM
VGAFVGAPTVLSAVLYTLVAGGLLSLVFMLGRGVAAQTLANVRFLLTDWA
LRASSGQGARLAPLQTTAARLPYAVAIALGTGAALLWPLATP
>Rfer_0556 flagellar basal body-associated protein FliL
MATKPDAAKPDAVKLDADEPGKKPVWRKKMLIIVIAGVMVLVSAGGGAFF
FISKKRAAAAVEGTGGASAVAVEAAPKGPPVYLPLDNMVVNLADPGGEKV
AQVGITLQVVDAHASESVKAYLPSIRSGVLMLISQRTAAELLTQEGKQKL
AKDIWRETLIPFGGGEAGAAPAGVKKKAAKAAQAELPVVGVLFSSFIVQ
>Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain
MNIQRFNAPTAREALAKARHAFGDGTLILSNRPTATGVEVVATGEETLSA
LDSTESFANRSKDQPALRRATLPSVPETSTPVEEDATQLAMSTLSFQDYV
RERMLRRRHESMTGPTAAAVQEAAPERTPKAAALPGPRQIEIQAPIKVTA
VPKPAPVPAAPHAPALSQGIVNELHAMKALIEDRFNTLTWLGQARQSPIQ
SNLMLKLIRAGYSPTLARTILERMPEEMGATDSVRWVMDILERNLKTDAA
TRPIHEEGGTYALVGATGVGKTTTAAKLAGLCARTHGPASVGLITLDTYR
VGAHEQLRAFGRMLGVVAHLAHDRAALQDLLNLLGNKKMVLIDTTGLAPN
DPRKRGMLDVLDLPGVNRLLVLNAGGHGDSLDDVVSSFKSTGAQQAVLSK
TDEAAKLGPALDAIVRHQLVLRGVTMGQKVPEDWEAADAAKLVRQSMRSP
AKSAFDPKPADLDFFFTPASASQAGRLDA
>Rfer_3989 lipid A biosynthesis acyltransferase
MSEPTPPKQVDDKPAWMQHEERGSFFLLQLMSRISLLFGRRLSRIVVYGI
ALYFLLAAPTARKASRSYLERALQRRVTWGDLYRHILAFASTIHDRFYLL
NNQTELFDIQVFGAEPISNGQGMLLFGAHMGSFEVLLTHGRSHQHNSCIA
MYPENARQLNRALAAINPQAITGIIALGQMDSMLTIHHKLETGAMVGVLA
DRAAGPDHYLSLPFLGAPARFPTGPFRMAAMLGYPVYFMTGLYCGGNRYE
VHFEPLADFAGITRDQRDQAVRETLQKYVTSLERHCKAAPYNWFNFFEFW
ESSP
>Rfer_3026 protein of unknown function DUF21
MEILLIAFLTLLNGVFAMSELALAASRKVRLTTMAEAGDKGAHAALTLLE
NPNQFLSTVQVGITSIGVLNGIVGEAAFSAGVAAWLHGWGVADKAAAISA
TAIVVTLITFITIIFGELVPKRIGQLHPEIVARWVARPMVWLATAAGPFV
NLLSGTTAAVLKLLRIDTTGARSVTEEEITASLEEGVDAGVIEQHEHQMV
QNVFRLDDRPLTSLMVPRTDVEWLDASNTVADSLKLAGSGGERGAHSWYP
VCRGSLDDVVGKISVARLLQLGADTPGTIEAYITPATFVPETLSGMELLE
QFRAKAGRFVLVVDEYGVVQGLLTPRDLLEAITGELQPGAQIDAWATQRD
DGSWLLDGLMPVSELKVRLAIDDLPEEDRGRYNTVAGLLMSVSGHLPSVG
ERITCAEWQFEVLDLDGKRIDKVLATPLAACAQPGQVMPGRV
>Rfer_1373 CheW-like protein
MANREALRELQTRLASRLQAARSGDVSVAWLAVKAGESNYLFPLAQSGEI
FPLTNVQVVPYCRQWFMGVVNLRGGLFGVVDLASFMSGGSTRGRTEQSLA
ESSVITINSALELNCALMVDGLAGLRKRDAFAGAEAPPEGSPVFFGTRFT
DRDGAHWQEINLQSLSQLPEFLSISA
>Rfer_1532 Biopolymer transport protein ExbD/TolR
MAITYREEGEDDAVLSEINTTPLVDVMLVLLIIFLITIPVINTSVAVRLP
REANQLQQSQPQTVVISVDARGGTYWFDARLTDAQSLQDKLTPMARQTPQ
PEVHIRGDARSDFEAVARVLYACQQAGITRIGFVTEPPHGH
>Rfer_1431 lipoprotein signal peptidase
MARRTFSATSTGSASMLQWLGLATIILMADQFTKVMILGFYQLGDSTYVT
SFFNVVRAHNSGAAFSFLAGASGWQRWFFTVIGVLAAGLILWLLKSHAGQ
RLFAFSMACILGGAIGNVIDRVRFGYVVDFLDFHWHGWHFPAFNVADSAI
TVGAACLILDELLRVRRGR
>Rfer_0903 CheW protein
MNAIVPVAARHTAVAVAQTQLEEQTQYLTFMLGGETFAIGILGIKEIIEY
HGLTEVPMMPTCIRGVINLRGAVVPVLDLAARFGKQSSEVSKKTCIVIVE
VQSGEDRHDMGVVVDAVNAVLEIPASEIEPPPSFGARIRSDFIEGMGKVA
GKFVILLNVNQVLSTEELGALGQVAGSADGALTGS
>Rfer_0955 ABC transporter related
MAKVTLKNVVKRYGSVAVVNDLSIEIQDKEFAVLVGSSGCGKSTALRMIA
GLETITSGEIYIGDTLVNDMAPKDRDIAMVFQNYALYPHMNVRENMGFGL
KIRKLSEAEIDARVQEAADILGLNELLERKPKELSGGQRQRVAVGRAIVR
KPKVFLFDEPLSNLDAKLRVAMRAEISKLHRRLGATMIYVTHDQVEAMTM
ADRIFIMNKGVVQQSGAPMEVYAQPVNRFVAGFIGSPAMNFFDARLVNEA
GQLFIDGGSFRVAMPEAFRANLVAHAGKEVVFGVRPEDIALHQPGADVGS
TISARAEVVELLGSEIFAHLSCDAHALVARMAVPKQPIGVGETIQIDFNM
ANMHVFDKNTSDAIV
>Rfer_3722 Mannosyl-glycoproteinendo-beta-N-acetylglucosamidase
MSYGQVSSSNNALAADAGSLSQLKLAAGQNTPAAIKEAAKQFESLFMREL
MKSMREATMKSGMLESSGGDLGTDLLDQQFAVQMSGQPGGLSDLIAAQLT
RQMGGAESAAADATGKTGASSFGALGKASALAAYGANSVAPRSTPTMSQS
QFVQNHTAAAIKVEKSTGIPASYLVGQAGHETGWGRHEIKMKGGAPSHNL
FGIKAGAGWTGKVAEVSTTEFVNGVAKKTMAKFRAYDSYEASFQDYARLI
TQTPRYAQASQQTGSAHAFASGLQKAGYATDPHYAAKLSRAIDTTQRLQR
TQVVAQNI
>Rfer_3473 regulator of competence-specific genes
MSTTQSIIDFLLDQLADCGAVTARKMFGEYCLYYDGRPVGLVCDNQLFLK
NTVQGRGLLEEVVEAAPYPRARPHLLLTADQWDDRHNLCQLVRVTADALS
LVEAPGPVKVRTAPAKPGGVAQGAAASVATLPNLGPKSRQMLEAAGIRTL
AQLKKLGSVVAYAKVKRCSGSASLNLLWALEGALSGLPWQVVAREHRTSL
LLALEQHEQGADRRPSP
>Rfer_3023 methyl-accepting chemotaxis sensory transducer
MFENIRITHRFIAVVVIFSAAMWTVIGVSYWGQVSARESIKTLHDGAMQP
ALLADQSIDKIVQNRLQVLLAFQHAPDGPLASVHEHATSVHTDAIAANRV
EANRIFKLMESALASPEEKAVFEATQTSRAAWRDKLDQAVNAIQSNNFSP
ATMTAFLKASREEGEAAVKSLLVYRDYQVKKANEAYAAAQSRFRTALIAF
GLVILIAATPATLLTFTLLTRMRHGFKLANETATAIAGGDLSHVVPHTGR
DEIGDLLLHMDTMRSKLHHVIGQVRNGSDSIANASTEVATGTLDLSRRTE
EQASSLEKTASASEELTSTVQANADNAAQANQLAASASDVASRGGAVVAQ
VVDTMEAINTSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGF
AVVAAEVRSLAQRSAEAAKEIKTLISDSVQKVGVGTAQVAQAGATMQEIV
AGIQRVADIVGEIALASREQSAGIAQINQAVTHLDGVTQQNAALVEQTSA
ASNALQDQARELAGLAASFKLEQYAGAGSSQALVRLR
>Rfer_1492 preprotein translocase, SecG subunit
MSALLTILLAVQMISAVAMVGLILVQHGKGADMGAAFGSGGSGSLFGASG
SANFLSRTTAVLATVFFVCTLLLAYFGTARPTVSSGSVLEGAAVSVPVPV
VVPPSVPASGAAQIPSK
>Rfer_0878 histidine kinase, HAMP protein
MSLATFKGSIRVKMLGGVLALEILLAACYAGVLYYSASQSINLNAQKAVE
QSQGVFDLLVQNDAKMLGAAMDSFATNAAVSQIYTEHQDRQALIAAVQDI
YRSNKSRYGITHMYFIDKNGTCFLRAHSTGLFGDAIDRETFLRARASGQE
ASGIELGKTAFALRRVMPYLHNGNVVGYLEFGEEIDHFDRLMKKQTGIDV
AVLVEKNFLNEDDYRGALKAKNQIDNWDAMKDYVMVSSTMNDLKTAASVT
SGAEVHSVKTPTYLGTVANGSSTFARGAFPLKDSAGKQVGVVLALSDVTD
QIHSQRSAMLYLILITVVISVLSFIGALLYLRAAIINPLVLLAQQANDIS
MGNVDKKLETQRQDEIGLLIHAFERMRLSLKKSLSMLTKRAEQG
>Rfer_3360 type II secretion system protein E
MAAVSSPQVRPLPVPGRPEKLRLGDVLVQQRLISQEQLQKTLDLQRQTGK
KVGRLLIETGIITEELLANGLARQLRIPFVNLKTFPFRADVVKLLPESAA
RRFRALVLEDKGDSLLLALGDPLDLFAFDELTRLLKRNIAIAAVPETQLA
LAFDRLYRRTEEISGLARALEKDLGDAVDFGELTATAGIEGAPVVRLLQS
LFEDAIQVGASDVHIEPQEAGLQIRVRVDGVLQTQTLADKRIAGALAQRL
KLMAGLDISEKRLPQDGRFSVRLKEQTIDVRLSTLPTSYGESVVMRLLIQ
GAGMRRLDGIGMPEAMLKRFREVLGRSAGLVLVTGPTGSGKTTTLYAALA
EINAAELKVITVEDPVEYRLPGITQVQVNDKIELSFARVLRATLRQDPDV
ILVGEMRDAETAEIGLRAAITGHLVLSTLHTRDAISTPFRLLDMGVPPFM
VATSLQAVIAQRLVRLNCSECAEPQEPSAQELAWLTSMVEAGDVVQARRG
RGCSACNGTGYAGRQGIYELLEMDAGLTQAASHADPATFMKLARERMKGH
TLAHHVLALVRQGRTSLAEALRIGFDVDEDLGAPD
>Rfer_0561 flagellar biosynthetic protein FliQ
MVLTMGQEALIMLLMVSAPVLGVVLVVGLLVSLFQAVTQINEATLAFVPK
LVAAMAVFALAGPWMLSILVDYIRRTFEAIPSAVM
>Rfer_2911 preprotein translocase, SecA subunit
MATNILTKIFGSRNDRQLKQYRKSVVRINAMEAELEKLSDEALRGKTQEF
KDRIAKGESLDALLPEAFAVVREGSKRVMKMRHFDVQLLGGMSLHNGKIS
EMGTGEGKTLTATMPVYLNALTGKGVHVVTVNDYLANRDAQWMGKLYNFL
GLSVGINLPNMAREEKQAAYRADITYGTNNEYGFDYLRDNMVYEGADRVQ
RGLNYAIVDEVDSILIDEARTPLIISGQAEDQTDLYIAINKVVPLLQRQE
GEEDIRTGEGVTKPGDFTVDEKSHQVFLTEQGHESAERILSELGLIPEGA
TLYDPANITLMHHLYAALRANHLYHRDQHYVVQNGEIVIVDEFTGRLMSG
RRWSEGLHQAVEAKEGVAIQPENQTMASITFQNYFRLYGKLAGMTGTADT
EAYEFQEIYGLETLVMPPNRPSRRDDQLDRVYKTTREKYEAAIKDIRECY
ERGQPVLVGTTSIENSEIIAALLDKEKLPHQVLNAKQHAREAEIIAQAGR
SKVITIATNMAGRGTDIVLGGNVSKELEAVEADETLTAEQKQQQIDAIQA
QWVQEHEKVKALGGLRIIATERHESRRIDNQLRGRSGRQGDPGSSRFYLS
LDDSLMRIFAGDRVKAIMDRLKMPDGEAIEAGIVTRSIESAQRKVESRNF
DMRKQLLEYDDVANDQRKVIYQQRNEILDAGDLSAQIASLRAGCFDDLVR
QYVPVESVEEQWDIATLEKVLADDWQLNLALQQQVSAASAITDHDLLTSV
QQEADRVFAAKVEQVGGENFTQFERMVLLQSIDTHWREHLSSLDYLRQGI
HLRGYAQKQPKQEYKREAFELFSQLLDAVKNDVTKVLMTVKVQSSEQLEQ
AAEDMESRGESIANVTYMAPTETGEVETITDDETFRKKSTIPGGNVPRVG
RNELCPCGSGKKYKHCHGKLA
>Rfer_0898 methyl-accepting chemotaxis sensory transducer
MNRMHHFFYPLALGLAGALAVLMTGGLGWAAIGLALLLAVAGLALGLRLA
AQHTARVQSVDRYLAAQQQFGERVAPIWSGHIESSRQQMESAVAALSERF
GGIVDKLDAAVHTASLETEILDDADKGLVAMFDRSEQDLGAVITAQKSAM
SSMVSMLERVQGLDGFIVELQDMALDVAKIAQQSNLLSLNAAIEAARAGD
LGRGFAVVAQEFRMLSTQSGDTGRRIAEKVSIISAAIVDACHVVQDAVKQ
RDGRVRTTEATIGRVLSEFKDITDTLQRSSAQLKDESIGIKAEIGEALVQ
LQFQDRVSQIMTQVRNNIEQLPDFLQQQAQVRSQAGELQPLDPQALLTEL
KGTYVMADQHVIHAGGQVEAKTDDEITFF
>Rfer_1672 signal recognition particle-docking protein FtsY
MFSFFKKKPPPTPVLPKSPDAATEPAGAATPIRSGSLIGSALVTPIDIPL
PASVPPERQKWLDKLKAGLGKTANSISGVFSGTRIDEALYEELEGALLMA
DTGVAATQYLLDDLRRKVKESGITHPVALKNILVASLTELLLPLEKPLVI
GQHKPTVIMVTGVNGAGKTTSIGKLTQHLAMHGASVLLAAADTFRAAARE
QLGVWATRAGTSTDTPDHSVEIISQQGGDPAAVSFDAVSAGKARGKDVVL
VDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILLVIDGNTGQNALTQ
VKAFDEALGLTGLIVTKLDGTAKGGVLAAIARERPVPVYFIGVGEQLEDL
ETFNAREFAQALLA
>Rfer_1554 ATP-dependent Clp protease, proteolytic subunit ClpP
MSLPNMMMGAMQTQALGMVPMVIEQSGRGERSYDIYSRLLKERVIFLVGP
VNDYVANLVVAQLLFLESDNPDKDISFYINSPGGSVSAGMAIFDTMNFVK
PDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMIHQPSGGSQGQATE
IEIQAREILKTREQLNKILAERTGQPLARIERDTERDYYMSADECKEYGL
IDQVISKRA
>Rfer_2935 ABC transporter related
MAPNPESLVELRNLTFGYGEQVVLDNISMSVPRGKVTALMGASGGGKTTI
LRLIGGQNRAKSGEMLFDGQDVTPMNQAQLYAARRRMGMLFQFGALFADL
SVFENVAFPLREHTNLSDPLIRHIVLMKLNAVGLRGARDLMPSDLSGGMA
RRVALARAIALDPELVMYDEPFSGLDPISLAIAARLIRQLNDSMGLTSVF
VSHELEQTFAISDHVIILANGKIAAQGTPEQVRQSTDPLVYQYVNALSDG
PVRFHYPGPSIEEDFSAGATP
>Rfer_3716 flagellar hook capping protein
MLSATSSATTATNTTSSTSTTSSTSTTAASDANASQDRFLKLLVAQLNNQ
DPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTSLQVLQGASMV
GHNVLVESNTLTRSAGVASGALDLDGKADAVKVEILSPGGQVLDTLNLGA
LGAGRHSFDWDASGYQGTGEPSFKVTATLGGQAVTNTALARDTVTSVGSD
NGAMTVQLQGRAAVAYSSVKAIL
>Rfer_0902 methyl-accepting chemotaxis sensory transducer
MFSNMKIGMRLTLGFAIVLLLMAALAAMGINGMAKIEGELDGVINDNMVK
IKLSEEMATQVHIVTRLMRTAVLLKDPAAVAGEYKKIASARQKYAAAFDS
LEKMTTDEKGKAMMTKVKFQLAEATPLNDKVMALDEAGKDDDAVQFLVSV
AAPATAKVQDVLDENVNLLEEDTRLDYANAKAAYEFAFKVMVTLATMAFL
FGALLAWFLTRSITGPVNKALNVANRLSEGDLTVRIDAVSKDETGQMLQA
MSNMISKLSIVVADVNSGAQNLASASEEVSATAQSLSQAASEQAAGVEET
SASIEQMTASISQNTENAKVTDGMASQAAKQAVEGGESVAATVAAMKQIA
KKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQI
AAQEIGEVASSSVELAEKAGKLLDEIVPRIKKTSDLVQEITAASEEQSSG
AGQINSAISQLNQTTQQNASSSEELAATSEEMSSQAEQLQQTMSFFKMEG
SSAVVRRPVAHKPTSSPKSATSKIGGMAKAAALSLSGAGADIDESKFSKF
>Rfer_3137 methyl-accepting chemotaxis sensory transducer
MKLANLKISQILYAGFGLLVVVYLLSSAINAEMMRRMRAHLDEIENTNNA
QIAIAHELHKSVSRISLSVRKIVLLNSDEEIAAEVNVFKQEVSIYLSVRD
KLAKTNGGAGSMESWKKVDDAYQKAGPLLGSMYESVQAHRDSEAIKTLKL
LGEAIDVWQKALDDGMQYQQSANKLAFDNSAKLYQAALVQLLVVAVVGIT
LAIGVSVGIVRLLVSQLGGEPKDAAKVALKIGAGDLTQDIRLKANDNISL
MAAMKSMQVNLAQVVTAVRNGSESVATASSEIAHGNHDLSARTEQQASAL
EETAASMEELGATVKQNADNARQASQLATSASTVAIQGGEVVGKVVETMR
GINEASRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE
VRSLAGRSAEAAKEIKSLIGVSVDRVEQGNQLVDQAGETMTQVVNAIRRV
TDIVAEISAASSEQSTGVAQVGEAVTQMDQATQQNAALVEQMAAAASSLQ
SQAHDLVGTVEQFKLCASYAGDAAGNALRLAR
>Rfer_3867 preprotein translocase, YajC subunit
MQSSLMSMLPLVLMFVVLYFVMIRPQMKKQKEHRAMIEALAKGDEVATVG
GMLGKVSKLGEGYLTLEVAPNVEVQIQRSAVVLVLPKGSIK
>Rfer_4223 SecY protein
MATNATQLAKNGKFGDLRRRLVFLLLALVVYRVGAHIPVPGIDPVQLAQF
FKGQQGGILGMFNMFSGGALSRFTVFALGIMPYISASIIMQLLTYVLPAF
EQLKKEGEAGRRKITQYTRYGTLGLALFQSMGIAIALESSPGLVIAPGFG
FRMTAIVTLTSGTLFLMWLGEQITERGLGNGISILIFGGIAAGLPNAIGG
LLELVRTGAMSIIVALFIVILVALVTYFVVFVERGQRKILVNYARRQVGN
KVYGGQSSHLPLKLNMAGVIPPIFASSIILLPATVVGWFSAGESMRWLKD
IAGSLTPGQPIYVMLYAAAIIFFCFFYTALVFNSRETADNLKKSGAFIPG
IRPGDHTAKYIDKILLRLTFAGAIYITMVCLLPEFLILKYNVPFYFGGTS
LLIIVVVTMDFMAQVQNYMMSQQYESLLKKANFKSS
>Rfer_3331 general secretion pathway protein, ATPase
MYLRHFSLREAPFSITPDSAFFYSHEGAQAALNMLLVALRSGEGFLKIVG
EVGCGKTVLCRQLLKTLQGECVTAYIPNPDMGPDDLLMTLMQELGIDAPQ
TLEGRKLTRYQVHNALRDCLLSYAEAGQRVVVCIDEAQAIPVRTLESLRL
LSNLETEKRKLLQLVLLGQPELDDKLSRPEIRQLLQRITFSEYLGPMTAH
CVPTYLAHRLATAALSEATDTQVFELEAAQLMARLSGGVPRLVNILAHKC
LMLAYGENVHRVNRQHVGLAGLDTPGVRALAPVSWLSRWLPWKSRGPGRI
VQNDQQGAAQ
>Rfer_3705 Chemotaxis phosphatase, CheZ
MHSNTTHLGASSLLPADIHQSIGVLTRQLHDALNGLGLTDKVKGWAGEIP
DAKSRLSYIARLTGEAAEKVLNRVDMAKAQHDHIASETRRIGTLIVKDPV
GAVAKGHVMNFLTDVEQSTQQIDQHLTEIMMAQDFHDLTGQVIAKVVTLV
ANVEEQLVQLLIQTAPADAVVKAPTHVAAAGLKPVLEGPVVCPEGNPDVV
TGQSEVDDLLASLGF
>Rfer_3153 MotA/TolQ/ExbB proton channel
MRGISSARRPHLFSIIQAAGWPIWPLVACSILALALVIERFVSLKTIKIA
PPQLLDEVLTITRTVVPTPDVVNQLAQNSALGEVLASGLRALNSHPRCSE
DELRSTMESTGRLVAHRLEKYLNALATIASAAPLMGLFGTVVGMIEIFGS
QSTPGGATGGNPAQLAHGISIALYNTAFGLIVAIPSLIFWRYFRARVDEY
LLTLELASERLARHLNTLRKP
>Rfer_0534 General secretion pathway protein G
MKSISQSMRRRLQAGFTLIELMVVLLIIGVLAALIVPNVLDRADDARVTA
AKTDVNNLMQALKLYRLDNQRYPTAEQGLQALLTKPTTAPVPPNWKSYLD
LLPNDPWGKPYVYLNPGIKGEVDVMSLGADGQAGGEGKNADIGSWQP
>Rfer_0631 flagellin-like
MSVINTNINSLTAQRNLGMSQASLATSMQRLSSGLRINSAKDDAAGLAIS
ERMTTQIRGSNQAARNANDGISLAQTAEGDLAQIGNNLQRMRELAVQSAN
ATNSSSDRAALDGEVQALSAEIDRVSQNSSFNGTKLLDGSFTAQKFQVGA
NNTANDSITVASIGSARTSVLGGYTTTKAGGVTTAALTAGALTLNGTSVG
ASAATSIPGQSASSAYSIAAAINAVSGQSGVTATAQATAVTGAVQTAFTA
ITTGATLTVNGIQVGSIAAGGAAPAQGANVAAAINLVSSQSGVTASAAAD
GKVTLTAADGRDIALGAGWVAADSGLTASATTVGTVTLDSTSSAGITIAG
TAPASAGFTAGTTLATATKISSMNVLTAAAATAALGTIDGALSTVSASRA
SLGAYQNRFTSVVTSLQTTSENLSASRSRIQDADFAAETANLSRAQVLQQ
AGTAMVAQANQLPQGVLALLR
>Rfer_0568 CheW protein
MGAMERIGEMTSAGAREYLTFRLDQEEYGIDILKVQEIRGYEPPTRIANA
PNFIKGVVNLRGTIVPIVDMRLKFNCSKAEYDSFTVVIILNLHSRIVGIV
VDSVSDVMELPPESLKAAPDVDSVIDGDAVLGLGSLGDRMLILLDIEKLM
SGVDMALAPDVV
>Rfer_3449 methyl-accepting chemotaxis sensory transducer
MFASIRSRLIGISVLVVILAVVTATLVSYSLARGFLLEDIAANLAQTAKA
EGKRIGLWAKMQKDIVTSMATQANAVDPNVGLQQAIDAGKLDLAYVGHAD
KRMISVPSRNRPADYDPTARPWYKLADSQGKAVLTAPYIGASSKKLVVSF
AYPVKEGSNTVAVVATDVALEDVLKDLQQIKPTASGFAFIVDKDGKIIAH
PRAELTLKPLAELSKDLTPDVISRALKEGAEPPRAQIDGNGFLLKGTPVP
ETDWTLVTAASESEALARLNQLLTYAALTIVAVGIAAALLSMGVVNHLLG
GLVRIRDAMREIGSGSGDLTQRLPVQGRDEISEMAQAFNEFVQKTEQVMR
DVRSSSASIANASREVAAGSLDLSNRTEQTASSLEETAASMQELTETVRH
SADSANMANQLAGSASQIAHRGGEVVSQVVSTMNDISTSSARISDIIQVI
DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKEIK
SLIVNSVERVEAGISLVAAAGQTMNEIVQSIGKVSEIVGDISSQTSDQRH
GIDEINAAIRQLDQMTQQNAALVEESTAAADSMSDQAQRLAQVVAAFKLS
DTQNTPMSRPFRTEPVRIKAPSVLEHCGPLQL
>Rfer_2749 methyl-accepting chemotaxis sensory transducer
MWRASASSVHKFPSLMIWVKKREAGSPGIKPAGDTFGFSSVAVTISEIST
MNNIAGWWSKIGLQRKLQLLIQGFLIVVLVGAQQWLSNQFEQRALRAAED
RTVAVADGVINGLNTLMVTKLGDKDVISDPVSRALFIQKMGVSENLKELR
VVRGKGTNDEFGVGLPQELPVDDMDRSVLASGKTQFKMIATGDGEASLRA
VLPFIAMKEFRSSKCLGCHGVDEGSVLGVASVTIDVKDDLAAIKLFNTWI
WIGQAVVQIVLFFVIGTIVRRLLNQLGAEPGEAASLAQSVAHGDLSQSIG
LKTGDTHSMMAQFRIMQESLSEVVGSVRQGAESVATASVQIAQGNHDLSA
RTESQASVLEETAASMEQLGSQVKQNADSARQANQLALNASTVAVKGGEV
VGQVVETMKGINDASHKISDIISVIDGIAFQTNILALNAAVEAARAGEQG
RGFAVVATEVRSLAGRSAEAAKEIKSLINASVERVEQGTVLVDQAGSTMQ
EVVSSIKRVTDIMGEISTASAEQSIGVAQVGEAISQMDQVTQQNASLVEE
MAAAADSLKSQAQELVQTVSVFKLSHRG
>Rfer_3296 basic membrane lipoprotein
MYKNLVAALAAACFISPVFSQTAAPIAAQEPLKIGFVYVAPLLDTGWVRQ
HDEGRRALEAALGARVKTTYVENVAEGPDAERVIRDLAAKGHKLIFTPSF
GYMEPTLKVAQEFPDVKFESITGYKTAPNVAVANARYYEGRYLAGIAAGR
MTTSHVAGYVAGFAIPEVLQGINAFTLGMRSVDPKAEVKVVWLNTWFDPS
RERDAAMTLFNQNVDVIAFHTGSSAVMVAAQERGRLAVGYHSDMRKIAPD
AQIVAVTHQWGPYYTQRAQAVLNGSWKSGRVWGGVREGMIKVEGFGSKVP
KAVQQEVLARQQDMAAGKLHPFQASQAVRDNEGKEVIAKGRTLTDEQILK
MNWLVQGVQGKLP
>Rfer_3630 toluene tolerance
MNRRRLTRWLTVLLMSTSNLLALPALAADEAANALITRLSTEVLGSIKAS
ASVRTGDVTTIIALVDATVMPHMNFKRMTASAVGPAWRQATPEQQKRLQD
EFKTLLVRTYAGAVAQVADLSVVVMPLRASPQDKEVVVRTEIKGRGDPVQ
LDYRLERTSGDGAGWKIYNLNVMGVWLVETYRSQFAQEVNTKGIDGLIAT
LADRNKVNASKG
>Rfer_3214 type II secretion system protein E
MNSAAASRTRHPAHAGPLDWRSLVLWLHGDGVISTEEAQRINARCAQAES
VQHPLVRLASVSVRRASDGKPLDIELLTQWLAGRAGLDYLRIDPLKVDVG
KVADTMSAAYAERHKILPVQVTPSEIVVATAEPFMTDWVAEVERQSRRSV
RRVVASPQDIHRYTAEFFALAKSVRAANKAGGNAGGASFEQLVELGKTNK
QLDANDQSVVQVVDWLWQYAFDQRASDIHLEPRREQGVIRFRIDGVLHPV
YQMPMGVLTAMTARIKLLGRMDVVERRRPQDGRIKTRNPRGDEIEMRIST
LPTAFGEKMVMRIFDPDTTVKDLDALGFSVHDAQRWEALVKRPNGIILVT
GPTGSGKTTTLYSTLKRIATEEVNVSTVEDPIEMIEPSFNQTQVQLQLDF
GFPEGLRALMRQDPDIIMVGEIRDSQTAEMAVQAALTGHLVFSTLHTNDA
PSAVTRLMELGVPSYLITATLLGVLAQRLVRTLCPHCKVPDPAATREALA
GVVKPWQINGGYKPFKPVGCVDCRMTGFMGRMGLYELLVVGEAFKEKITR
EPNADALKRQAVLDGMRPLRLAGALRVAEGLTVLEEVLSSTPPLT
>Rfer_3877 twitching motility protein
MERDQATKFINDLLKLMISRNGSDLFLTADFPPAIKVDGKVTKVSPQALT
AAHTLSLARSIMSDKQVAEFERTKECNFAIAPPGVGRFRVSAFIQQGRVG
LVLRVIPLSVPTIDGLGVPPILKEVASAKRGLCILVGATGSGKSTTLAAM
VDWRNENSFGHIITVEDPIEFVHQHKNCVVTQREVGIDTDSWEAALKNTL
RQAPDVILMGEIRDRETMEHAVAFAETGHLCLATLHANSANQALDRIINF
FPEERRAQLLMDLSLNLKALVSQRLIPKQDGRGRYAVVEIMLNTPLISDM
IFKGEVSEIKEIMKKSRNLGMQTFDQALYDAYEANLITYEDALRNADSLN
DLRLQIKLNSHRGKAQDLNAGTENFSIV
>Rfer_3188 lipid A biosynthesis acyltransferase
MLSRFGILVMHLLGRLPLAWVRALGYGLGWTLYFLALPRRRVAQTNLRLC
FPDQTATQIRLLARRTFVHFAQAWLDRGWLWHGTPEVTRRRLTLMGAVSE
LHGSEPVVIFAPHFVGLDAGWTALTQQLPRQFTTIYTNQANKILDAWILA
GRRRFGSARLFGRVDGVKTIVAALRSGDPLYLLPDMNFGVEDSIFVPFYG
ISAATVPSLARFAKLGRAKVVPVVTRMTHQGYEVEVMPAWPGFPSDDALA
DTALMNQRLQSYIDSMPDQYFWVHKRFKDRPPGIPAVY
>Rfer_3916 ABC transporter related
MSASGPVAAAAPAVVEIDQLWSVFHTAGRDAVVHQDLNLRIVAGEFMSIV
GGSGSGKTVLLRQILGLERPARGSVTVLDQPAAQLGSEGAASRVGMLFQH
GALFSAFTVLENIGFALRELGTFPAALIRDVAMVKLQMVGLEPAQAHKMP
ADLSGGMVKRVALARALVMDPPLLLLDEPTSGLDPDSADGFVALLRSLHR
ELGLTVVMVTHDLDTLFELSTRIAVVAEKRIIACGTPTEVMAHDHPFIHD
FFLGARGQRAAAVLRQAPVTE
>Rfer_1514 RND efflux system, outer membrane lipoprotein, NodT
MHRDFEIARRRFSRSALAAFVVLGLSACANMQEIGPQAALRDAASLGLPI
QSSASVAPNAQWWRELGDEQLNGLIDQALAANPSLKIAQARLARAQAGAA
ATEAASGPQLSAGVDAMRQKFTANGMIPPPLAGSMAETGTAQLSGNWELD
FFGKNRAALAAALGSARAAQADADAARTLLASTVARNYFQLTRLHAQLAL
AQRLLAQRTQVLRLVQHRLDAGLDTQLELRLSEGNLPDARLQIEGLHEQI
TLTTHALAALIGQPNRALAIVPPLHDAIEIAAPTTVSADLLGRRADIAAA
RWRVEAASQDVAGAKSQFYPNVNLVAFAGFSSIGLDRLLGAGSEQWGVGP
ALRLPLFDGGRLRANLRGKTADLDAAIESYNAAVIDAVRDVADQLAATQA
ITRQQAEQRAAQDSAEHAYAIATRRYEAGLGNLLSVLAAETAVLSQSRQG
IDLSARARDTQVSLMRALGGGYRAELPAATAQK
>Rfer_3310 conserved hypothetical protein
MKIRTLLLLLVLSLVVGFAALNRTAFLAPTTLSLGLADVQAPLGLVMLGL
LVFVTGMFLVFVLYLQTTVLFDTRQHAKELQSNRKLADQAEASRFTELRS
FLELELKKQLDQDGHSRAAVLTRIDQMEATLRLVVEQSGNSLAATLGELE
DRLDKGNKDTTHNLLA
>Rfer_2604 Type I secretion outer membrane protein, TolC
MKTFRLLPLLVAIGTTMALPVQAQSLVDLYQSARSYDATYQSAKSQFDAT
LARADQAKALILPTVGLSLGASATNLDSTLPAPLQPTSNYNTQSATVSAS
QPLYRPANWAGYEQGMKQVDLAQAQLAAADQDLIVRVSQAYFDVLAAMDS
LTFVRAQKAAVGEQLASAKRNFEVGTATITDTREAQARFDLGTAQEIAAD
NDLRVKKLALDQLVGKVDTQPQPLAQPLALPTLVPDDITAWVAQSQNNHP
AIRQTQVALDVAQLETQKARAGHKPTLDLTAGYNITQNNGTASTSMDYRS
NAATVGLAFNLPLFAGFAIQNRIKETLALEDKARSDLEGTKRAVDQGTRT
AFFGVQSGQGQVKALEAAEASSQSALDANKLGYQVGVRINIDVLNSQSQL
YDTKARLAKARYDVLVGGLRLRQASGTLQAEDLNSVNALLAK
>Rfer_3723 Flagellar hook-associated protein
MSGLLSVGTRALQANQVMLQTAGNNIANVNTPGYSRQSAVLQTSTGQFTG
GGYIGKGVDIQTIQRNFSAFLTRQSALASATGAADSSRADKLKQLEGIFP
GGTAGLGAAINDMLNAFSDVANAPTDLTARTVALTRVDEAAKRMRTASQN
LDDLQSGVAQELSQKVSNINSLAKSIADINDKIARTQGSGQPPNDLLDQR
DQLVRDLNQYVQTSSITASDGTVGIFLAGSQALVLGSTVSPVSIVKDDFG
DPLKSKLAISRGGQAITLDENALGGGEVAGLLRFQNNDLVEGRNLLGRLT
LAIGTSMNNQHQLGLDLDGNAGGNLFTPTVFGAGNILKPSAPATLNTGTA
SPALTISDVTQFVASDYEMNFTSATSGNITRRSDGVVTAFTSVPITIDGL
NLSIPSGSANPGDRFLLKPFSTAASNINAEFSAPRALAVASPVAGSLGTG
NTGSMQLSSLLARSNPVASTPVVLTFTGANSYTRSDEIPANATTFTYTSG
QVIEGTTPATNPLSQWSLTLQGVPKAGDTFTVQQQPAAFRNLNAGNASAM
TGLRDVAMFDGSALSDGYASLISQIGIRTQSANYSAQVSSSIAANLERDR
TGVSGVNLDEEAAKLLQYQQAYQASAKMMQIAQGIFDTLIQTLR
>Rfer_3404 Death-on-curing protein
MSARRQNWVWIESALIHAVHDEQLAEHGGGTGVRDHNLLESALARPQQLA
HYGSPDEADLAASYGYGISRNHSFVDGNKRTGFVALELFLALNGYDLTAT
DADCVLIMLSVAAGDIEEAAFAQWIRQHVQAR
>Rfer_2921 Pilus assembly protein, PilO
MASKPALNFDFPALQEKLFRQFRNLDPKDPSNWPALPRYLMFAAIAALVV
VILWFLWLNTSEEELATEQATEVKLREEYKVKLGKAVNLEALKKQREQVL
QYVTQLEKQLPSKAEMDALLSDINQAGLGRSLQFDLFRPGQVTVKDYYAE
LPIAVRVTGRYHDIGAFASDIANLSRIVTLNNLTILPGKEGTLAMDATAK
TFRYLDADEVAAQRKAAPKGAKK
>Rfer_3762 Type I secretion outer membrane protein, TolC
MGCKRTLSLLAVAVLSGLGVQAQSLPEPLVKAARKAVVSNPEVQARWNGF
KAAGNERDVARGGFLPQLDLTASTGREDRDSPVVGNVGSYNVNAARLTLN
QMLFDGMFTANEARRLGYAKLTRYYELTEASETAALEAVKAYADVARYRE
LVDVATQNYVEHKQTTLQVEERANSGVGRRVDVEQANGRLALAESNLLTE
LTNLHDVSARYLRVVGEKPPANLPPLPEPFKLGTLPASTEALMLDGLQGS
PTLNAAIENVRASKMGIESRKAAYMPRVDFRAYASHDNNTGGVSGGTRVN
GVELVLNYNLFRGGADKARERQAVDQKEQARDLQEKACRDVRQTLSIAYS
DVRSLSEQQRYMDQHRLSTEKSREAYRQQFDIGQRTLLDLLDSQNEYFEA
TRSYINARYNQVAAQARTLAGMGQLVTALGVNREDMPSLQDAGQDRSGID
PAELCPLEESMVDTLDKIKAETVIPSRARAVAPVVQKPAPTKVSLSADTL
FDSGKSNLKAEGLRSLDSLLARIKGVQLDVVIAVGHTDSVGSEEFNNRLS
LARAESVRAYLVGKGVDVKRVRAVGKGESQPIADNATEAGHAKNRRVDVE
ALEATIPSK
>Rfer_1741 Peptidase S26A, signal peptidase I
MQILTSFILAAFVGYAGAWYLGMLEGNFALLLFLATVVTGVYWLAERFYF
LPQRQKAVALLEADAIKRREALVKQGISQVDMNITEARSRLLAQPWWLDW
TAGLFPVIIAVFFLRSFLFEPFKIPSGSMIPTLTVGDLILVNKFHYGVRL
PVLNTKISEGTPPQRGDVMVFRYPPKPSLDYIKRVVGVPGDEVAYLNKRL
TINGQVIQTVALPEYFDEDAMRYFKQFEETLGEQKHRLLNDDDRPAFIPG
ADDFAFKQNCRYSVEGVVCKVPAGHYFMMGDNRDNSLDSRYWGFVPDKNI
VGKAFFVWMNFSSLKRIGSFN
>Rfer_1374 methyl-accepting chemotaxis sensory transducer
MSVVDQLKNFFVKKVPESDQDSRLSLGVPGATLYPMELDQMTGTTESGQQ
RPVAPGRSSGDTGEAIDDEAANLIALPILGKKTVVQHQRLLSILLGLALV
LLVVVTLFALNQANKVAQQLGATGQSLMQSQRLAKSVSQALVGGAEAFPD
VVESSGVLAKSVRGLKAGDGQMGLSALSPDYLPELDKITPLMERAEKNAA
IVLGQQKILTQVGAALRLINRQSSDLLEIAETASSLKLQQNAAAAEISAA
GQLVMLTQRIGKSSNEFLTVEGVSPEAVFLLGKDLNSFKEIAQGMLDGSP
ELRLGATKDPQTREQLAALINLFEETRKQAGAILGNLQGLVSAREAQVSI
IADSEPLRRNLEELQGKLSAHAGLGAGALSMLVGSVLLALLCAGGLSYVQ
LLDSRKRQVAAEAQRLEAERQEKEAKRVNDANQAAILRLMNELQTVAEGD
LTQEATVTEDITGAIADSVNYTVEELRSLVGNVQSTVTRVAQTTAEVDTT
STELLAASNEQLHEIRETGRSVVDMASRINDVSVQAQESASVARQSLQAA
EVGLKAVQNTIGGMNSIRDQIQETSKRIKRLGESSQEIGEITELISDITE
QTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSADATRQISALVKA
IQTDTQDAVGAMERSTQGVVEGAKLSDNAGTALTEIDQVSRRLAELIEQI
SSSTSREANLANVVADNIQHIFAVTEQTGEGTRSTAAQVRELSKMAEELR
QSVSRFKIA
>Rfer_0756 MotA/TolQ/ExbB proton channel
MNAAQLFWQGDTLTRGVALLLLAMSVGSWVVIVWKAWLLRRASADVVRSL
AAFWSSISVAEALHKLQAFDREALVIPMIVATKLEANGTLSSAGDKSQQL
TRVLRDALHAALTKLHYGQVLLATVGATAPFVGLLGTVWGIYHALIGIAN
AGQVTIDKISGPVGEALIMTAAGLAVAIPAVLGYNVLGRVIGRIEAQLEG
FARDLRELAGTQPVWQV
>Rfer_1888 CheC, inhibitor of MCP methylation
MTITGAQLDALTEIFNIGAGRAASSLSDIVGDEVLLSVPRVEFYRAHEVN
AKVLSLSSARLGSVKQKFRGPFNLTASLLFTEERALEIVQEMLGSQVQKE
DLVEYEQEAMCEVGNIILNACLSAMADMLGISFESTLPEYSSAEPDVVIE
RLVADADNPLMLVLHINMLIEKRRSQGTLIFWLSSSSLQELMLHLEQFVS
RI
>Rfer_0552 flagellar assembly protein FliH
MRNYSRFIPGEEIDAVEQWNFAAVDTASLLLAAQVKVRDEAAEESKQEAC
RQAGYAEGFAQGRAQATMEAQRQMADFIAHQGSDAARQFAQLFATVQAQL
AEAEQVMAQGTLELACELARQVLRRELSVDPKAVQPVIREALGLLAADTK
SAVVRLHPLDLNVLEEVVRTEFSSLSLTLLADPTLTRGGCLIESAGTVVD
GTLEKRWMRAVASLGLDSSWEEPADEQ
>Rfer_2922 Pilus assembly protein, PilQ
MMHVHKLVLTSVLLTLAACGPTGEDELRQWMTDQKSQTHPKVAPISEPKQ
FKPESYTQVTATEPFSNQKLTQALKRESTQSVSSGALIAPELARRHEALE
AFPLDAMALVGSLTKAGQPVALVRVDNLLYQVKPGNHLGQNYGRVTKITE
TEVTLREIVQDAVGEWIERPATLQLQEKSK
>Rfer_0570 CheD, stimulates methylation of MCP proteins
MNMFASGTAALPLRASGVVVAPTVLAGGALSRVDQLKAQIRNPGEASFFY
RDHHFQYDAVKVLPGEYFVSAEDLVIMTVLGSCISACIWDGRVRAGGMNH
FMLPDGDSVDGFGRYGSYAMELLINELLKKGARRESMQAKVFGGAAVMAG
FTTMNVGERNTKFVLDYLATERIPVVSQDVLDIHPRKVCFFPVTGKVLVK
RLAHSHPETLAVEERKGNAATVAKATSGGSVDLF
>Rfer_2225 methyl-accepting chemotaxis sensory transducer
MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPL
AKERLISDWSRNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALL
KQIEPLLSSQEEKDLFSKVSDVRKAYLSSRDQVTKLKADGQADEANRLLE
STYIPAADNYMKLVSEFLGLQRKNLDAKAVEISGIETTSRNYLVALAALV
LTFGVICAWLLTVGITGPLTNAVAVARRVADGDLATDIQTEGKDETAQLL
QALSAMKDNLARIVGNVRQGSEGVATASAEIAQGNNDLSARTEQQASALE
ETAASMEELSATVRQNADNARQANQLAQSASTVAIKGGEVVSRVVETMKG
INDSSKKISDIIQVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV
RSLAGRSADAAKEIKGLINDSVQRVEQGSTLVDQAGVTMTEVVSSIRRVT
DIMGEISAASTEQSQGVAQVSEAVTQMDQVTQQNAALVEEMAAAASSLKS
QAQELVGTVSVFKLSQSQGAGLPDSSAPQRTRSVRSAPAPAPAPAARKLG
NTPAKPAIRAKPDSLAAPAAATPKAGGDDWESF
>Rfer_0318 glucose-methanol-choline oxidoreductase
MKFDFDWLVIGSGFGGSVSALRLTEKGYSVGVLERGRRFRDEDLAESAWQ
LGRFVWAPILGLKGVMRMRVFRHVFFPSQSAVGGGSTVYGGVLYRARDKF
FENAQWRGLGDWARELRPHYEQAERMLGVSTVPFTSTNQRLALSMARHFG
REDDFVLSPTGVYFGDPGVTVKDPFFGGQGPDRTGCMRCGSCMVGCRTGA
MNTLTKNYLWFAEKLGAQIKAEREVVDVRPIGAADGSEGYQVTTQRPGAW
FGRGRQVHTARGIVLAGGTLGTNELLANCKLSGSLPRISDRLGDLVRTNS
ESVLNVRLPTDMETWKDVTASSCVRLDDETQIEFLTYGRRADLMGMMYTL
LVGRGNRVTRPLKWLGAITHHPVQWLKTLWPFGWSRHMVTLLVMQTLDNA
IALKPRKRWLGGGWRVVTEQNRERPNPTYIDVANQATQWLARHTGGIAQS
NIVEALANIPTTAHVLGGAVIGADASSGVIDQQLRIFGYKNMLVCDGSAM
PANPGVNPALTITALAEYAMSHVPSATTHRLGTAGQP
>Rfer_0572 glucose-methanol-choline oxidoreductase
MFDYIIVGGGSAGCVLAARLSENPEITVALLEAGPVDSSVLIHCPAGLAL
MAQTGQANWKVASVAQPGLNGRQGYSPLGKVLGGSSSINAMIYIRGQRQD
YDLWAAEGNAGWAYDDVLPYFKRAEHNERGGDAFHGSDGPLNVMDLRCPN
RYSPAFVQAGQQAGYAHNTDFNAATQEGVGMYQVTHKNGERFSAAKAYLT
PNLARPNLQVFTGAHTTRILLEHKRAVGVEFQHEGQVKQLKASREVLLCA
GALHSPQILMLSGIGEHAHLVGMGIATQHNLPGVGQHLHDHVDVVLVVNA
PGAKDLFGISLTGMRHLIKGIVDWRQHRSGILTTNFAEAGGFIKSQPIEA
TPDLQLHFVIGKLINHGRTVVFGHGFSCHVCLLRPRSRGSVKLASKDPLA
TPLIDPNFLGDRDDMDRMVRGFKLARRILAQPALAALGGRELEASIHAQS
DAQIEQFIRDHADTIYHPVGSCRMGNGPLDVVDAQLRVRGLEGLRVVDAS
IMPSVVSGNTNAPVIMIAEKAADMIKAAQVL
>Rfer_2923 type II and III secretion system protein
MNNQNYWMAKRMWQQVLLAAWLMLLALGAQAQSAIESVSGSIQGGVEVVR
IDLTQPLAAVPTGFSIQSPARIALDFPGVTSAMGRSTVEINQGNLRSVSV
VQAGDRTRVVLNLKQATAYKAQLQGKSLLVVLDAVALAAPAASATPVFAE
NRSRDTLPLKDLDFRRGEEGSGRVVVSLPNSQVGVDIRQQGATLVVEFMK
STLPEGMRRRLDVTDFGTPIQTVTTFAVGDRVRMVIEPKGQWVHSAYQTD
DQFVVEVKPVKADTSKLTQGPGYSGQKLSLNFQNIEVRSLLQVIADFTNF
NIITSDSVNGSVTLRLQDVPWDQALDIILQAKGLGMRKTGNVLWIAPKDE
INAKEKLELESVASLQSLEPLRTQSFQLNYTKAADVAAQLTATGGGTGAN
SSRMLSPRGSTISEARTNQLFVTDIPSKLEQVQQLIAKLDIPVRQVLIEA
RIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNAV
ASSGAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSA
LEADGKGKVVSSPRVVTADQIKALIEQGTELPYQVASSSGATAIAFRKAN
LKLEVTPQITPEGNIILDLDVNKDTVGQSTAAGFAINTKHIKTQVLVENG
GTVVIGGIFELTESDNETKVPFLGDLPGVGNLFKTRGRVSNKQEMLVFIT
PKVVADRAAR
>Rfer_0571 response regulator receiver modulated CheB methylesterase
MARWICFEDIELKKIRVVVVDDSALVRSLLAEIINRQKDMECVGTANDPL
IAREMIRELNPDVLTLDIEMPRMDGIDFLGRLMRLRPMPVVMVSTLTERG
AEITMKALELGAIDFVAKPRIGVASGLTELSDQIVEKVRIAATAHVRRAP
AVPAAATPAVGGAVGGHAPVASIGRVSTEKLICIGASTGGTEAIKEILTR
LPADSPGIVITQHMPPGFTTSFAARLNSLCQIAVQEAVNGERILPGHAYI
APGGKQFRVSRSGANYVALVEDGELVNRHKPSVEVLFKSVASVVGRNAYG
VMLTGMGNDGAKAMREMKDAGSYNFVQDEASCIVFGMPREAILHGAADEV
LPLTAIAPALIAKLSSATDRYRV
>Rfer_3718 Flagellar basal-body rod FlgF
MDRLIYTAMSGANAAAHRQAVLSNNLANVSTNGFRAELSTFRAVPVRGDG
ASTRVMAIEATAGYVDTPGSAQRTGRGLDAMTTGNAWFAVQGLDGTESYT
RSGSFEVSPEGTLVTNSGLTVLGDGGAPISIPTGGEVTIGFDGNLSAKVG
NQPPTGVGRLKLVTPGADDPLNRSEDGLFRATSGEPLPNDTNARVQVGSL
EGSNVNAIEAMVGMIQTARQFETQMRLLQTAESNDRSAAQLLGLQG
>Rfer_3717 protein of unknown function DUF1078-like
MSFQTGLSGLNASSRSLDVIGNNIANANTTGMKSSRAEFGDLVASSLGAG
GSSGAGIGVAVGSISQQFSQGNINITGNDLDVAINGGGFFQLALPDGSAA
YTRDGSFKLDANGYIKTNSGANVLGYPTDKTGKTTSVKPEILQLPTSAPI
AASATTAISAELNLDARAPIATSVTPPTPRSTYGTSLTAYDSQGVTMPVN
LYFSKVTPTTAGTDQWAVYDSPTGASVGSLVFDASGALQSSTMGSLTLTP
APPSIVPAFPVTVDVSKVTQFGAAFAVSNLTQDGYAPGELTGLKIGENGQ
ITARYSNGQTQIAGQLSLADFRNVQGLSPIGGNSWVASYTSGDPVLGSPG
VGKFGALRSGALEESNVDLTAELVNMMTAQRAYQANAQTIKTQDQVMSTL
VNLR
>Rfer_0042 Heme exporter protein D (CcmD)
MQWNSVSEFFAMGGYAFYVWGSFGVTAAVMGIETLVIRRQRQELLRNLRN
ELLSEGASS
>Rfer_0550 flagellar M-ring protein FliF
MFSQPGRIIVSIGGAKLPHTDLETLGNPMSAAPAIAINPTLSQRFSGLDQ
GQRLRMGLGLVVFVAIGIIGLMMGRQAEWRVLYANLADKDGGAIVAQLTT
MNVPYKYADGGGAILVPADKVYDTRLRLASQGLPKGAVAGFETMDANRFG
MTQFQERLAFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKP
SASVLVSLNAGRTLDRAQLAGIVHLVSSSVPEMNASAVSVLDDSGKLLST
PPEGADGAGGGDAQQLQYVQQLEQLYSRRILDILEPVVGRGNARAQVTAE
LDFSQTESTSESHKPNQTPDSSAIRSQQVSESSNGSGISGPPSGVPGATS
NKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVVRG
GTGIVKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFN
KERGDSVNLMNAPFTTERVVPVDLPFWKQSEIQDLARSLAWPLGTLLFGA
LVLLGVIRPALKTLAQSQPRISASSHQLNAIESEAPERAQLAAPARSSEL
AGPTSGELALDDARKLTRDNPAAVANIVKTWINGEAPA
>Rfer_3713 Flageller protein FlgA
MFKQFLNSTRCLLQTVGLAGAVFFTVGALAQADGVRPEFMDSTQQWLDKA
VAGNLPSGSSPLRMEITVGELDSRLRLAPCARVEPYLPPGTRLWGKTRLG
LRCLEGSVKWNVFLPVTIKAYGQAWVVKGQVSAGAALTQDDVMEAEVDWA
EQREAIISNPDQWLGQVANRALTSGQALRQGMIRPAEVFRAGAQIRVQVQ
GAGFEITSDGQALSAGVVGQPARVKMNNGHVMSGEVLDSRTVRLEI
>Rfer_2939 toluene tolerance
MPVHAADEAADAFIKRLSTEVLNSIKADKSVQSGDVSRIVALVDTLVMPN
VDFKRMTASAVGPKWRQATPEQQQRLQEEFKILLVRTYAGALTQVNDVTF
SVKPMHSGADDKEVVVRTEIKGRGDPVQLDYRLERTPGEGAGWKIYNLNV
LGVWLVDTYRSQFAQEINAKGIDGLIATLVERNKTNAKKG
>Rfer_2664 methylation
MRSIYQPSVRHRTQSGFTLIELMITVAIIGILAALAYPAYTDSVRKGKRA
EARAALMNLLQQQERYLTQMNTYVVFAAGAADTAFKTYSSSDGTSAQSSH
LLGARKCQKIGSDTPSEKDCIEVFAVPQAGVFSDPQVTSMAIDTQGRRTC
TGTQIDRCWK
>Rfer_3881 putative acyltransferase
MITLFKILSTLPLWLLHAVGWGLGWLVFAVSGVYRQRFVANARQAGLGWR
HWRGSVGESGKLVAELPRLWLGRPVPVQWDGAQHVEEALARGRGVLFLTP
HLGCFEITAQAYAQRYGQTQQPMTVLFRPSRQPWLREVMSTARARPGLHT
APTTLAGVKQMIKALKKGQSLGLLPDQVPPLGMGVWAPFFGREAYTMTLS
VRLAQQTGATVLMAWGERLSWGRGYRVHVQPLPASLPADGAQAVRIINAA
LETLIRDCPQQYLWGYARYKQPRQEI
>Rfer_1107 ABC transporter related
MAGVNIRNLCVRFGETEVIKDLNLDVVESEFLVLLGPSGCGKSTLLHSIA
GLIDVADGRIEIDGKDMTWADPTDRNIGMVFQSYALYPTMTVERNMSFGL
RIKGTPKTEIEKRVRRAAEMLQLGPLLNRKPSQLSGGQRQRVAIGRALVR
EAGVFLFDEPLSNLDAKLRAELRRELKLLHKNLHSTMIYVTHDQVEAMTL
ATRIVVMRSGKIQQIGAPAEVYERPDNLFVAGFIGSPGMNFLHGSLNAVA
DSRMFESERLTLDVSPYEFKRKPSGAQEVVLGIRPENLLIHAQGQLQGTV
SLIEPMGNHHVVWVDFGGNLLSSVVTGALAFRVDESIRFSIDMARISLFE
RASELRL
>Rfer_2045 twitching motility protein
MATSAPNATPGTSGTMERILRLMSEKKASDVYLSSNSPALIRINGQCVPI
NSQMLPPEAPRNLLAEILPPNRLEELEELNELNIGWSLAGVGRFRISAMR
QRGSIAAVIRYISVDIPALDTLGVPLILGQLIMEKRGLLLMVGATGAGKS
TTMASIIDHRNANATGHILTIEDPMEFLFKNKRSVVNQREVGTDTQSTHI
ALKNALRQAPDVIMIGEIRDRETMSAAIAYAQTGHLCLATLHANNSYQAL
NRILSFYPVEVRQTMLGDLSASLKAIVSQRLLRTTAGGRIPAVEIMLNTN
LVAEMIEKGDFSGVKDAMEKSMAEGGQTFEQDIARLILEGVVDRKEGLLN
SDSPTNLMWRLQNDFNARTQASEPAEDPDDQPSFTEITFDVKHGS
>Rfer_0543 type II secretion system protein E
MRYPLPYAFARTHQLLLEDEAGDLTLCVHPDSGGSAVSEVMRKFPVRHLQ
SLGAQALIQRISAAYAQGESSAAAVVSEVESDADLTRMMQDLPAIEDLLE
TSDDAPIIRMLNALLTQAARDGASDIHIEPYERHSSVRFRVDGTLREVVQ
PNRALHAALISRLKIMAELDIAERRLPQDGRISLRIGTRAVDVRVSTLPS
AHGERAVLRLLDKSEGRLSLEALGMQGEVLKRFEHLVTQPHGIVLVTGPT
GSGKTTTLYAALSRLDASRSNIMTVEDPIEYELAGVGQTQVNAKIELTFA
KALRAILRQDPDIIMIGEIRDFETAQIAIQASLTGHLVLATLHTNDATSA
VTRLTDMGVEPFLLSSSLLGVLAQRLLRKLCLTCHGAGCSACGQTGYAGR
SGVFELLVTDDAIRAQIHGRAAEADIRAAALASGMTLMRDDGERLVRLGL
TSREELVRVTRD
>Rfer_2354 methyl-accepting chemotaxis sensory transducer
MQFVTFMRRFTIRFRMLGAIAMVAMALLFIGAIGVAAQLYANSIATDLVA
RDITSLTELARLQQAMGNVRLNEKEMIIQYENSVEAAKYKEAWTASFARL
EASAKALAPLLPQDAQRAELAQVVTGMQQFRTEFAPLAQQLESLAFPSAQ
VASATIGKLQPIYDKANSTLTTLATGLQRATETSQGKLQSTVNQVVWLIA
GATGVLLLVFIPLTIWNMNAICVPILKAEQVAQDIAQGDLTDHNVDCRGN
DEAARLLRSLEAMRQSLGQLVGQVRMSTDSIATASAEIASGNQDLSVRTE
QTASNLQRAASHMDQLTHTVQQSADASRQANQLASTAGDVAARGGSVVSQ
VVSTMNDINTSSKKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF
AVVASEVRSLAGRSAEAAKEIKSLIGASVERIETGSRLVTDAGKTMTDIV
NSVQRVSDIIGEITGAAAEQSQGIGEVNTAVVQLDQMTQQNAALVEQSAA
AAESLREQAQRLAEVVGTFKIPSSGAGNPSPMLPRVQQSTPPQLSTPSRL
SLRA
>Rfer_3703 OmpA/MotB
MATDGKKLQPIIVKKIKKGGHVVHGGAWKIAYADFVTAMMAFFLLMWLLG
STSEGDKKGLSDYFSAPLKVSMQGGSGAGGSNTILPGGGADLTQKSGQNR
RGDGSDPMQKRMAANAVKAEVAKQDAKKLAGISAKISALISGNTKLTEFS
RQIRLETTADGLQIQIVDDQKRPMFDSGSAVVKPYMRDILREIGGALNGV
ENKISLDGHTDSSPYSSAQRGYSNWELSSDRANASRRELVAAGMPDDKLA
RVVGLASSILLDPENPTGAVNRRISITVMTREAEERLMGTERPPVSAGPD
PQAAPVKTPTSPSQ
>Rfer_0799 type II secretion system protein E
MSLRERLGASAQGFPPAGDPVPEDAGAPTRAYQDTKARIHQVLLGRLDLE
AMENLSPENLKEELRQMVERLLLEENLVLNASERRNLVRDIQYEMLGFGP
LEPLLADPTVSDILVNTYHQVYVERRGRLELTDIKFTDDDHLMKIIDKIV
SRVGRRIDESSPMVDARLPDGSRVNAIIPPLAIDGPILSIRRFATVPLKL
SNLIEYRSLSDEMAQFIGALSQAKINILISGGTGSGKTTLLNILSAFIST
TERIVTIEDAAELQLQQPHVVRLETRPPNIEGRGEVTQRALVRNALRMRP
DRIVLGEVRGAEALDMLQAMNTGHEGSMTTVHANSPRDALARLESMIAMA
GVDLPAKAARAQVASAIGVIIQESRMSDGTRKLTSIQEVTGMEGETVTLQ
EIFIFRQTGVGPNGAVEGHFTATGVRPRCWDRLITRGINLPQTLFEPVRH
EV
>Rfer_3937 methyl-accepting chemotaxis sensory transducer
MALFTNMKVSTRLALGFGAIVLIGTAISIFGALKMRTLAGNLDEVANNRM
VKTFQFAAYKDNLNIVASSVRNMVITQDNNLRNGEKKKIEESRAANAKLL
AQLEQSTHSPQATEFLKIIKETGPRYYIGIDKVSELASRGADASAGSELM
GDVQNLQNTLFKAVGDSMALQQTLAAKLANEAAAEAAASMTVLISLALLM
LLIGTGVGWAITRNLSRSLGGEPAELCDAVSRVADGDLSARLQLRTGDTA
SVLAAVERMQTSLTRVVGTVRQGSESVASASAEIAQGNQDLSARTEQQAS
ALEETAASMEELSATVKQNADNAKQANQLAQSASTVAIQGGHMVSQVVDT
MKGINDASRKISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA
SEVRSLAGRSANAAKEIKSLINTSVERVEQGTAQVDQAGATMTEVVGSIR
RVTDLMGEITAASVEQSQGVAQVGEAVTQMDQTTQQNAALVEEMAAAASS
LQTQAQDLVGTVAVFKLSQDDVGGRAHNTTPQRTINTHPTPVDRTLESGA
KTKIVPSPAPRSLAAPVTTAHKTPRAATANAGGDDWESF
>Rfer_2902 type II secretion system protein E
MTAVDTSSRESPATALPGLGRALILAGKLGQKSAEEIYRKAQSARTSFIA
ELTGSGAVSASDLAHTMSTAYAAPLVDMAAIDPQRLPKGLLDVKICHDYR
VVVLSKRNNRLIVATADPSDSQAAEKIKFATQLGVDWVVAEYDKLLQLVT
ANAITASETMEHIIGDDFEFDEASTEALTESSDTSSSEVEDAPVVKFLHK
MLLDAFSMRASDLHFEPYEHNYRVRFRIDGELREIASPPIAIKDKLASRI
KVISRMDISEKRVPQDGKMKLKIGPERVIDFRVSTLPTLFGEKIVIRILD
PGSAKLGIEALGYEPEEKERLLQAIGRPYGMILVTGPTGSGKTVSLYTCL
NMLNKPGVNIATAEDPCEINLPGVNQVNVNDKAGLTFAVALKSFLRQDPD
IIMVGEIRDLETADISIKAAQTGHLVLSTLHTNDAPTTLTRMRNMGIAPF
NIASSVILITAQRLARRLCPNCKTPIEIPRKALIDAGYQDDEFQAPWISY
RAVGCSMCNNGYKGRVGIYQVMPVSEEIQRIILRDGSALEIAEQAKREGV
RSLRQAGLHKAKLGLTSLEEVLAVTNE
>Rfer_3865 SecF protein
MEFFKIKRDIPFMRHAIIFNVVSLVTFLAAVFFLFSRGLHLSVEFTGGTL
MEVTYTQPADLNLVRSTVAKLGLNDVQVQNFGTARDVLIRLPVQKGVTSA
QQSVQVMAALKAADASAVMRRTEFVGPQVGDELAADGLKALASVVVGIML
YLSIRFEWKFAVAAIIANLHDVVIILGFFAFFQWEFSLPVLAAVLAVLGY
SVNESVVIFDRIRENFRRYRKMNTMQIIDSAITSTISRTIITHGSTQMMV
LSMLLFGGATLHYFALALTIGILFGIYSSVFVAAAIAMWLGIQREDLIKG
GAKKEEDPNDPNAGATV
>Rfer_2665 methylation
MMLNFRTRQHLSAGLCGRQVGFTLIELLVTIAIATLLMMVAVPSFVAFQR
NAQLSDAVSNFVAAANAARANAMKLGLNTYVVPNSTTTGWSSGWMVYADA
NWNEAYDAASEEVILRHEALSADITVTIPSGSSLAGSDPYLMFNGSGYPR
LKTGAFGGATMTMSNISPRSSSIIIDPAGRVRSCKPGLC
>Rfer_0542 type II and III secretion system protein
MKLRAPIKPKNAIYSIAVCAILTGVTALFPINLLAQASAVSKPGEAVTLN
FSNADIEAVARTMATITGTNVVVDPRVKGTLTLVTDKPVSRRAAMNQFQA
ALRLQGFTMVESAGLYKVVPEADAKLQSGAVTVSDEAIGGALGNQITTQI
FKLNFESANNLVAVLRPLISPNNTINVNPGTNSLVITDYADNLRRMARII
AAVDVSNATDVEILPLKHAIATDLAPLVLRLVESSAAGTAPGQADTSFKT
ILVAEPRSNALILRAANPARVALVKSLVDKLDQPAAPGLNGEAGNIHVVY
LKNADATKLAATLRAAMTGQAPAAAAPGVAAAATVAVVAATQSTTGGQIQ
ADVATNSLIITAPEPQYRQLRAVIDRLDGRRAQVLVESLIVEVNADRAAE
FGIQWQGPLGKAGDGVIGLLGTNFGAAGKNIINLATGAGAVAPGAGLNFG
AVQRTNGVYVLGFLANFLETSGSGNVLSTPNLLTLDNEEAKIVIGENVPF
VTGSYTSNNTSGASVNPFTTVERKDVGLTLKVKPQINEDGTVKMVIYQET
SAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLGGLLQDKYSGNQDKV
PGLGDVPLFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASDQLSMDRYDL
MRSGMNAAQPVASQLVPINEAPQLPALPGSQPAVQRLQPPEPLGATPAKP
QL
>Rfer_0632 flagellar hook-associated 2-like
MATISSTGIGSGLDVNSIVSQLVALEKTPLKTLALKATNTQNQISAFGEI
QSQFAALTDVASRISVASTWGARNASSSNTSAATITATGTANATSFSLDV
DQLARSQSGSSAAVAPGTMPGAGTLTLQLGTWTAGGAAFTPGAAASVNVT
VLATDTISDIASKINGANAGVVATVFNDGTNERLLLQSKTTGAAAGFRMT
VADADTTNNDNAGLSRLSFDPATVDPLTGLASGMATAGIPVQYAQDAKAR
INGLAVTSATNTLTDNIPGVTIKLVATTTTGYGLPGEVKSPLTMAISEDV
TPAVKNVSDFVTAYNKLNKSLTDLTKYDAATKTAGLFQGDSSVVGLQNIL
RNMLGSASLGASSQRLSDVGLERQLDGSLVINTAKLSAAANNGTTLQQLF
TNDNKDPLTNGFALKFRDLGRGVASSGGSVKNKAEALQKNLDNNTKEQTK
VNDRAALFETRLRKQYSALDAQMAQLNALNAYVTQQVATWNKSTA
>Rfer_3154 Biopolymer transport protein ExbD/TolR
MNFRPRQKEEPEINLIPFIDVLLVVLIFLMLSTTYSKFTELQLKLPVADT
EAQRDYPREVLVSVSSEGAYTVNKTPVAGRSVDIVAAALSEGAKAGKDSV
VIIHADASARHQDVITVMEAARRAGLSQITFATQSTAHARGN
>Rfer_0925 methyl-accepting chemotaxis sensory transducer
MKIFTSLKIGPRLGLGFALVLAFVALISGIAIWELHAVAQEARQMMQEPL
AKERHISEWSRVINVAVIRTSAIAKSSDPALVSFFAANAAETTKIAADLH
KVIEPMMTSNEEKKLFSTISKVRQDYLASRNQVGKLKAEGKSDEANDTLE
KAFVPISESYIKLVGELLEVQRKTLDQKASQISDIEQSSRTTLLALTLLT
IAVGAAFAWLLTKGITGPLSDAAVALRRVSEGDLANHISPQGRDETAQLL
HVLKDMQTRLASVVSQVRQGSERVAIASAEIAQGNHDLSDRTEQQASALE
ETAASMEELSSTVKQNADNARQANQLAQSASTVAIKGGSVVGQVVETMKG
INDASRKISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV
RSLAGRSADAAKEIKILINTSVERVAQGTTLVDQAGVTMTEVVSSIKRVT
DLMGEISAASSEQSQGVAQVGEAVTQMDQATQQNAALVEEMAAAASSLNS
QAQDLVQTVAVFNLGANEAHQGSALASRSIRSQQTSTVGYKSAERRSLAA
PA
>Rfer_0551 flagellar motor switch protein FliG
MNQTDGLQDAAILMMSLGEAEASEVFKHLSPKEVQKLGEAIAKTKAITRE
RVDEVVDRFTGVAAAQSLLVSNSGDYVRSVLKRALGDDKAALLIDRILQG
GDVSGIESLKWMDPSSVAELLRNEHPQIVAAILVHLDFDQAADVLKFFAE
RQRNEVMLRVATMEGIQPSALKDLNEVLFQVLAGGDKVRKSSLGGVKTAA
EMINLMGTAIEGTVIESIRNHDPDLAQKIMDKMFVFDDVMKLDDKAIQTV
LKEVSSDVLIVALKGAQPELKEKFLANMSTRAAEALREDLESRGPMRLSE
VEAQQKEILKTVRRLADEGTIVIGGGADDLMV
>Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor
MTGQDPSPAPTQAVPTPPPSSFPIVGIGASAGGLAAIEAFFSGMPADVDP
GMAFVLVQHLDPDHKSILTELIQRTTRMQVSEVKDGMPVQPNCVYIIPPN
RDMAFLNGTLQLLEPAAPRGHRLPIDFLFRSLALDQHEHAIGIVLSGTGS
DGTLGVRAIKIDGGMVMVQSPASCEFDGMPQSALATGLVDYELPPAEMAP
QLIAYVTHAFGHPPQSATVAEPHTENALKKIFVLLRSQTGHDFSQYKPNT
IYRRIERRMAVHQIDGIGGYVKYLQQTPVEVQALFNDLLIGVTNFFRDPD
AFAVLESQVIPKLFEGKPAGSAVRVWCAGCSTGEEAYSIAILLQERLETL
KVSYRVQVFATDIDSRAIAVARAGLYPGSIADDISPERLARFFTAEPDGS
AYRIHKNIRDLLVFSEQDVIKDPPFSKLDLISCRNLLIYLGPELQKKLIS
LFHYALQPGGVLFLGTSETAGEAGGLFAVLQRKAKIYQRKEDFQGAQRAA
LGRFLPPLTDQDITRPVAPGKGAQLPKLSLRELTEQTLLQQVAPVAALVN
GHGDILYLHGRTGLYLEPAPGEAGINNILKMAREGLRRDLTTTLHKAATS
RDTVRASGVRVKTNGHFTLVNLSICPVAGGPAAALESPLFLVMLEKAPDA
NAAESKSPPAPATLPAISAAGGSDKLRSDASAQIAELNEELQAKEEYLHA
ANEELETTNEELKSSNEEMQSVNEELQSTNEELETSKEEMQSINEELSTV
NTELQTKVSDLSRANNDMNNLLAGTGIGTIFVDHALRILRFTPAASQIIN
LILSDVGRPVAHIVSNMVGYNTLVEDLQAVLKTLIPKEVEVQTTDAKTYT
LRILPYRTLDNVIEGAVITFVEITEVKRTRAALHKTNELLRLAVVVRDAH
DAITVQDLSGRIIAWNPGAERLYGWSELEALQMNVRTRIPAELQEEALAQ
VHLLSQAQTLAPYPTRRLTKDGRVLNVLLTATALLDEAGQVYAIATTERP
SDDPVAKG
>Rfer_0562 flagellar biosynthetic protein FliR
MIWPFLRVLAVFTAAPLFSSKAFPLRARIGLAFFIAFAAQPSLQGQPIIS
ISGPEAMGAVAQQVGIGLAIGFTVRLVFAAVELAGEVVGFQMGLGFASFF
NPALNTQSSAVARFFGQMATFLFVVMNGHLMVLMAVIKSFDKFPVNQNFL
EAIGQMKIYDFGTDLFASGLWIALPMVGMLLFANLALGIVSRVAPQMNIF
AIGFPVTLTVGMVGIAATLPMLDQPFMTLMERAIDIFAGK
>Rfer_3342 signal recognition particle protein
MASALSDKLSRLVKEIRGQARITEANVTDMLREVRMALLEADVALPVVRD
FIARVKEKALGQDVLGSLSPGQALVSIVNRELSSTMGEGVSDINLAAQPP
AVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKM
VTAQAGAEWFPSSPDQKPVAIALAALDYARKHFFDVLLVDTAGRLAIDEA
LMQEIKALHAALNPVETLFVVDAMQGQDAVNTAKAFKDALPLTGIILTKL
DGDSRGGAALSVRQVTGAPIKFAGTSEKLDGLEVFDAERHAGRILGMGDI
LALVEQVTSGVDMAAAQKLAAKVKSGGGFDLNDFLAQIQQMKQMGGLSSL
MDKLPASMAAKAGQMDMGRVEKDIQRKQGIIHSMTPLERRKPELIKATRK
RRIAAGAGVQVQEVNRMLKEFEQMQDMMKKMKGGGMMKMMKRMGGMKGMP
KMPF
>Rfer_3332 type II and III secretion system protein
MTRKTDTMMTIFQPTRLGHAVWSPAGALPGLCLAMGVTLLAGCAAERPLR
TPDVGEAIRADLAVGEAARPAKPVLVPSRISDALAEPAPPAVAARPEPKL
DLLVNNAPAREVFLAIVADTRYSMMMHPDVAGTLSVTLRGVTVPEALEAI
RDVYGYDFKMEGRRITVYGPTLQTRIFTINYPHSQRVGNSDLRVSPGAAL
QSSSTGGTSSGATQPTSSSQQGEGSRVTTTSKTDFWAELTEAVKGLVGAG
PGRSVVISPQAGIMAVHAMPDELRQVDKFLKAAQIAVERQVMLEAKIVEV
ELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLP
GFSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSS
PRIATLNNQKAVLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTP
FFSGISLDVTPQIDEGTKIMLHVHPSVTTVSERAKQIDLGSAGNYVLPLA
SSSMNETDTLVRIQDGNIVAIGGLMQIESNRKSSGLPGTSDVPLFSTLFG
NHANTGRKKEVVVLIKPTIIRTAQDWEAQTRRTRAALDDIDSVRARVIRI
DGTVQEGAPRTPAQ
>Rfer_0364 response regulator receiver modulated CheW protein
MNQAMRDIDERTNLTGNSMFELLLFRLGQAPGSQRRELFGINVFKVREIM
VMPEITVMVNAPPAVMGVANIRGQMIPVINLPAVTGCNPTQGLGILLVTE
FARTTQAFAVEEVNEIVRLEWKHVLSAEGNGGGLVTSIARLDGNAENTRL
AQVLDVEQILRDVFPPPPQALNDDAMLPKLQLPPGTVILAADDSAVARMM
IEQGLTAMEVPYIMAKTGQEAWDRLQALSVQAATEGKTAQDKVALVLTDL
EMPEMDGFTLTRNIKQDVRFRSIPVVIHSSLTGSANEGHVKSVGADAYVA
KFVAEELAATIRQVLTR
>Rfer_0558 Flagellar motor switch FliN
MAIDEKPAEDDGMADWAEALLEQKSSEPTAEPGGVLAGDTSHSFSSSDAP
ISDINRVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVL
VNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSKGG
>Rfer_2673 Biopolymer transport protein ExbD/TolR
MASVISRGRGRRTISEINMVPFIDVMLVLLIIFMVTAPLITPSVIDLPSV
GKAARQPDQVIQIIIGKDETLQMKVQEKSSPLGLKDLASAVKQAQSGVTN
SAVVISADKSIKYESVVKVMDTLQRAGVQRVGLSVQLAS
>Rfer_3714 flagellar basal-body rod protein FlgB
MITNMTSGLDFQAKALVLRAERQRVIASNIANADTPGYVARDLNFKDAML
QATGADSSSGLRTGNSNSQGGGANGMTHPHHIALSGGAGASLGGSSHLAY
TVQSQPSLDGNSVDLDRERANFTDNAVRYEATLRFINGQSKTLLSAIQGQ
>Rfer_0991 CheW protein
MSQQTATPSGTATSQGTPMAGAVTSIREFLAFKLGREEYCIDILRVQEIR
SYEEPTRMAHAPAFIKGVVNLRGVIVPIVDMRIKFNLEQVNYDTFTVVIV
LTIGTQVVGMVVDGVSDVITLKPEQIRPVPELSSAVSSDHLLGIGSVGDR
MLILLDIEKFMASAEMGLIAETTH
>Rfer_1119 Biopolymer transport protein ExbD/TolR
MSMNVGSNDDDGDDAVMSAINTTPLVDVMLVLLIIFLITIPVVTTSIKLS
LPKERVEVRESKPENIIISVDQAGNIFWYDARIKNVDALVEKLKKVSSVK
PQPEVQVRGDANARYEGVGKVLLACQRAGIVKVAFITEPPPLGG
>Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT
MTSTIYEASGSRRACSRTLALAIFPLFILSGCASWSARTADTPAVDVPTH
WSTAVSSNNAQAPATSLAQWWQRFNDPLLSTLVTQALQANTSILSAQAAL
QQARALRDVRTAGLLPGVNASGSAQRSKSGDNDASNSFRAGLDASWEPDI
FGGKRSALNASEADAQAAQTTLADVQVSIAAEVALAYIQLRGQQAQLLIA
RNNLASQTETLQITDWRAQAGLITSLEVEQSRASTEQTRAQIPALEASIA
KTRHSLAVLTGQPPDSLQALINDPTAVPQAAPDLALSIPAQTLRQRPDVR
TAEHRISAALAQVSAADAARYPGFSIGGSLGLNALTLAGLGSGATVATAL
LASVSVPLFDGGAARSQVLAQEAALEQARVNYQAVVLTALKDVEDALVAL
QGDRARLIHLQGAATAAGNADLMAQQRYSSGLIDFQTVLQTQRTLLSAQD
SVASTEADVSADHVRLYKALGGGWN
>Rfer_2957 twin-arginine translocation protein TatB
MIDIGITKLAIIGGIALIVIGPEKLPGLAKTIGTLLGRARRYVADVKDEV
NRSMDLDELKKMKDTVESAVRDVDNTIQTSAADFEKNWADATAQAADTPF
NDFSPTPPAYRHPNKKWRVKQGATPNWYKARAGIRTRALSGAARVARFRP
HKVN
>Rfer_0810 toluene tolerance
MRRQLWVRLFAVFVLATSNLLAVPARAQDQTADAFIKHLSSEMLNSIKTD
PASRVGNVPAIIALVDAKLMPNVNFKRMTSSAAGPTWRQMTPEQQKRLQE
EFKILLVRTYAGALSQIDDVTVAVKPLRAAPDDKELVVRTDVKGRGDPIQ
LDYRLEKTPGEGSSWKIYNLNIMGVWLVETYRSQFAQEINAKGVDGLIAA
LADRNKSNAKKG
>Rfer_1094 ABC transporter related
MAASLHIAGIRKVFGKGAKAVEVLKKIDIDVAPGEFLILVGPSGCGKSTL
LNIIAGLEEPTEGELRIAGKNVIGVAPAQRDIAMVFQSYALYPTMSVADN
IGFALEMRKVPKAARLKRIHEVAAMLQIEQLLDRRPAQLSGGQRQRVAMG
RALARDPQLFLFDEPLSNLDAKLRVEMRAEIKRLHLVSGITSVYVTHDQI
EAMTLGSRIAVMKDGILQQIGTPDDIYRRPANTYVAGFIGSPTMNFIAGQ
VDGTGADAVFSFEGGELRLPCPTVGKVTLGQRPEHIHLDPDATWRGEVIL
VEPTGADTYVVVRTGVGLITVRTPPSTQVLMGDVVGLSVSGRHNNWFDAQ
SGLRLI
>Rfer_0554 Flagellar export FliJ
MSAVKSFLLAIDLSTRKRDEAAQDLMRVQSAHVFAQDQMNQLEVYAAETA
SRWTACAQVGTTPELMRHHYQFLDRLQHAIGLQQGVLANESRKVAQAKRL
VLEAEFRLVSLKQVLKKKQAGLALVQTRREQKQMDEFAALQTRRTSAGHF
SGNQL
>Rfer_2342 methyl-accepting chemotaxis sensory transducer
MIFASLLTPGLLLMRRVRIVTKLSLLAVVLMTPPILMLVHYFLTEPAGYG
AAWIAWLSAACLIVSLYVLLAIYRSFALDLAQVAQAMAQMLRGDLRLNVV
PRGRDELADLASAVSKMGSTVSAMVANVRSNSAFVAYAGKSLASSNRELA
DRTEQQAANLEQTAASVEQLSSTVQENAQTAGQANAQAAGVRDLADQGAS
TMAQSIASVEAIQSSAKRMDEIVSVIDGLAFQTNILALNAAVEAARAGES
GRGFAVVASEVRLLAQRSAESAKEIRQLIGASSAQVAASVQSIRSAGGNI
TQIVSGIRDVAVNMGQISTSSAEQSAGLTEITSAVRQLDEITQRNAQMVE
QAVSQATDLENRASTLVDAVALFKLQQGSAEEAVELVNRAVAQRRRSASV
QAFVRDVTDPAQGFYDRDMYVFVLDDEGTYLSFGGNPAKVGTRVQDIPGI
DGQGLVDDIIVQARREPGWVEYDINNPTTGRVQTKMSYVQMVDGLYVGCG
VYRNLVVG
>Rfer_1531 MotA/TolQ/ExbB proton channel
MTPKFLMTRRAPVWLLSFMLAFAAVGLVQAQPVAAPAVPVAAGETPMAAA
SPAMAVPPMATPLLTPPASESLANPYGMRSVWQQGDLVARTTLLLLALMS
LLSWYFIIAKLLAQGRLSAQAKAAKKAFAVADALNKRVEGLDKASPFRFI
AESALEAARRYYSLAGQVDMNSWLSQDIVRSVATLQMRSQEGLSVLATIG
STAPFVGLFGTVWGIYNALVTIGVSGQASIEKVAGPVGEALIMTALGLAV
AVPAVLGYNWLVRRNRVTLHAVKGFGSELHTLLLVEIDKSQRAGAASQAA
>Rfer_4242 60 kDa inner membrane insertion protein
MNDIRRTILWVIFGFSMVLLWDQWQVFNGHKATFFPSASNTAATAHPPVP
ASSVPAGVPTANTVAAAAQMTGAAAGLTSTTDASAAAHERLVVTTDVLKL
TFDTEGASVVQTEFVRHADMADKSKHFVLLESNKDHTYMAQTGLIAGAAG
GTFPTHKTVMTVAPGERTLQEGSNQLVIRFESPELGGVKLVKTFTLTRGT
YAVAVKHEVVNVGTAAVSPQLYLQLVRDGTKPLGESKFYSTFTGPAIYTE
AKKYQKVDFKDIENNKVDVEKTAESGYVAMVQHYFASAWLLGDGIKRDLF
LRKVDTNLYAVGMITPMDNIAPGASKSVEARFFAGPQEEKVLEALAPGLE
LVKDYGWLTILAKPLYWLLHAIESFLGNWGWSIVALVLLLKAAFYWLNAK
AYASMAKMKAVNPKVTEMRERLKDNPQQMQQEMMRIYREEKVNPMGGCFP
IMIQIPVFIALYWVLLASVEMRNAPWILWIHDLSSPDPFYILPLVMTLTT
VLQTSLNPAPPDPMQAKMMWFMPLAFSVMFFFFPAGLVLYWITNNILSIA
QQWLINTRMGVPPKFHLPSFK
>Rfer_3938 putative GAF sensor protein
MSAVIKPVSGERNSEQVFFESQKLPSEKRGMLFEALFYKQLQQVTTRIHE
TENLEQIMLEASQDICKLFNADRLTLYAVNEDQSAIVSKVKTGLNSSRDL
KLPITPQSIAGYVAFSRRLLNLPDVYDDDALKQIHPALTFLKEVDKRSGY
RTRQMLVAPILEGKTLYGVLQVINNKNDQPFGELEVEGVSQLCKTLGTAI
RQRIQKAEASARRMATKYDGLVADGVMSAQELEHCLQQARVEGKSVEQVL
ITQYQVRPAQIGPSLAKFFGVPYEPFSAGRIRSEMLHGPLKREFIEQQGW
IPLEESPDGLVIMCVDPEAALSSRVVPQVFPRIIRFSYRVTTQTEFADTL
GQIFGLEAAGGSIDELLADMDGGAIDDGSNDDSLESAAADNELVKFVNKV
IIDAYKQGVSDIHIEPMPGKLKTGIRFRIDGTLQPYIEVPAHFRQAMVTR
LKIMCDLDISERRRPQDGKIKFKKYGPLDIELRVATIPSAGGVEDVVMRI
LAAGEPIPMDKLGLTPHNMERVIRTVEKPYGLFYVCGPTGSGKTTTLHSI
LKHLNTPDTKIWTAEDPVEITQKGLRQVQINRKAGIDFALIMRAFLRADP
DIIMVGESRDKETVAMGIEASLTGHLVFSTLHTNSAPESITRLLDMGMDP
FNFADALLGILAQRLAKKLCDCKEAYVPDAEELRLFAAEYSDELRHSQAW
AADYEGETDRLIASWHRQYDQDGQLRFYRHVGCDKCHNTGYKGRIGLHEL
LIADDGIKKLIQERARVAEIFAAAVEGGMRTLKMDGMEKIMMGLTDIKMV
RSVCIK
>Rfer_2029 methyl-accepting chemotaxis sensory transducer
MTMSTVLSKFNGAWSFSRQIRVVLSLVLAVALLGSALGVWSLQRVANETS
RMVDDAMATERLAVDLYRHLALNVARSKAFALSSEPQVADVLTPEINQTS
TVVDELLRQLGSRLSSPDDQLMLGHMLQANREFLRARQELTLARDGGVTA
NIEQVYAKRFSPAAQALLEAVARLRDSRQARIDASVVEIAGLSRSAQWGL
VLFGCGALLLGGLLSAWLVRAITRPIHQAVDAADRVAALDLSDPIDGHDR
DEGGRLLAALSRMQSSLHTLVSEVQGASHGVAEGATQIATGNLDFSSRTE
LAASFLQQTAAAVEQIAATLHQSLAAASRGEALARSAAVEATAGRKAMTE
VMQTMSDISQSSHQIAQITAVIDGIAFQTNILALNAAVEAARAGEHGRGF
AVVAAEVRALANRSAVAAQEIRSLIGVSVDKAKLGTLNVRQARDTMSAID
DAVARVVQVIGDISTGTREQSAGMASINTALSRLDQMTQQNAAVVEQSAA
AAQSLQAQAGDLRDMAGQFRLPALALALR
>Rfer_1118 Biopolymer transport protein ExbD/TolR
MGMHVGNTSSSGEPEVMMEINTTPLIDVMLVLLVMLIITIPIQLHSVNLE
MPVGAPPTTLIKPEKIQIDIDEQSVVYWQGLPVSAQELDEKMKAVAPQQP
QPEVHIRPNKASQYAVFANVLSSSKRLGLNKIAVIGAEQFVQ
>Rfer_0990 methyl-accepting chemotaxis sensory transducer
MNNLKISTRLALGFAVIIAVFLLLAGVTAWRVNMVSEASTRMERSAELLQ
LAGNWQGDVRQNSARSLAVGYSEGGTMLDFFKEAMAATTRGTTETQKAFL
AKVQDSESRKRAENVGEVRKTWIATRDQVNVLKAAGDDAGGRALVEKKFL
PITDDYIRATQALVDGEAAHVHAAQQEVKEMFQQLYLLGAVLLVLTLAAA
VFIGWRLSRSISSRVDAARLAAQRIGEGDLSQPLSAAGKDEIGQLLQALS
TMQDNLSRVVSNVRQGSESVATASAEIAQGNQDLSARTESQASALEETAA
SMEELSSTVKQNADNAKQANQLAQSASSVAIQGGEVVAQVVDTMKGINTS
SQRISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA
GRSADAAKEIKNLINDSVERVEQGTALVGQAGATMTEVVSSIRRVTDIMG
EISAASSEQSAGVSQVGEAVTQMDQATQQNAALVEEMAAAASSLKSQAQD
LVGTVAVFKLAQGQEGFASSSPRAAAPANHSAPKQLSPARAA
>Rfer_2137 GTP-binding protein TypA
MSHKQIRNIAIIAHVDHGKTTMVDQLLRQSGTFAEHEKVVDTVMDNNAIE
KERGITILAKNCAVTWQGTHINIVDTPGHADFGGEVERALSMVDGVVLLI
DAQEGPMPQTRFVTKKALALGLKPILVVNKVDKPGARPQWVVNAAFDLFD
KLGATDEQLDFPVVYASGINGWSSLEEGGQGEQWGPDMSALFNTILKHVP
HQQGDPAAPLQLQISALDFSTFVGRIGVGRISQGTIRPMMDVVVMEGPDG
KAVKGRVNQVLTFQGLERVQTTDAGPGEIVLINGLADIGIGVTITDPVNP
APLPMLKVDEPTLTMNFCVNTSPLAGREGKYVTSRQIWDRLQKELQHNVA
LRVKETDEEGIFEVMGRGELHLTILLENMRREGFELAVSKPRVVLKEVNG
EKYEPIELVTIDVEEQHQGGVMQALGERKGDLINMEPDGRGRVRLEYRIP
ARGLIGFTNEFLNLTRGSGLISNIFDSYEPHRGDIGGRKNGVLISMDAGE
IFNYALGKLDDRGRMFVTANDPVYEGMIVGIHNRDNDLVVNATRTKQLTN
FRVSGKEDAIKITPPIQLTLEYGVEFIEDDELVEITPKSIRLRKRYLTES
ERKRAGR
>Rfer_3609 methyl-accepting chemotaxis sensory transducer
MNRLKISTRLALLIGVLAMLLVLTGSIGLYGMGKSDEAMDIAYKDSTVQI
ANIGNIKYLMLRNRLMIANAVIEQTPESIKRAGDEVEADIAKISKIWDVY
LVGPKSSEEAQLAKAYADKRAQYVQEGLRPAVAALQANELPTTRQLVVEK
IRPAFDAARDAADALQKFQLDEAKKGFEANSDRYHTIRAVCIAAIALGLL
FAAWFGWMLARGIANPLARAVKISEAVAQGDLSQTIRVTNGTDEISALMR
GFAHMQTSLASVVTNVRRGSEGVATASAEIAQGNSDLSSRTESQASALEE
TAASMEQLSSTVKANADNARQANQLALSASTVAVQGGEVVAQVVDTMKGI
NDASRKISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR
SLAGRSAEAAKEIKSLINANVEHVEQGTLLVDKAGSTMTEVVSAIKRVTD
IMGEISAASNEQSLGVTQVGEAVTQMDQVTQQNAALVEEMAAAASSLKVQ
AQELVQVVAVFKLSANDAQQGMATMAAVRSHKPGAVPFKGEERRGAGIPK
GAAARSRTSSPASQAPSTTPTLLSARAAPPKAAPAAAGAEGDWETF
>Rfer_0549 flagellar hook-basal body complex protein
MELRLSPTTMPTTVRPTLAPRLSSSQVTGGADGGFSGALKSALSSVSAAQ
NDATRLQREVQMENPNVSLEETMVAIQKAQIGFQATLHVRNRMVQAYTDI
MNMQV
>Rfer_1533 Biopolymer transport protein ExbD/TolR
MAIDFDEASDPTELDVASGMNITPLIDVLLVLLVMLIITIPIQLHSVNME
MPAGAPLSMPTEPLVVKIEVNAQNQLLWNGQPVAGRVELDQRLQAAAQLS
EQPEIHIRAHRSAKYDTVAAVLTAAQQMGLQKIGVVGLDEYAR
>Rfer_0904 MCP methyltransferase, CheR-type
MQPISDSEFSQFQHFIFEEAGITLSTAKKALVTGRLSKRLVHHRLDSFGE
YFRLLKSGHQAQEVQMAVDLLTTNETYFFREPKHFEFLRKQALAAHNRPQ
MFRVWSAASSSGEEAYSIAMVLADCLESTPWEVMGSDISTRVLAGAQRAL
YTMERARHVSPAYLQRFCLRGRDEHEGSLLVDRQLRSRVHFRQVNLNTPL
PDLGSFDVIFLRNVMIYFNEETKRQVVARVVSALKPGGYFCIGHSESLND
ITQAVKAIAPSIYQKPA
>Rfer_0662 ATPase
MYETYYGLNSKPFQLNPDPSFYFGSKQHRRAKAYLEYGVQRNEGFIVITG
EVGAGKTTIVRGLLASLDPDKVVAANLVTTQLDAEDTLRLVGAAFGVRVK
DVSKADVLMALEAYLVNQTSQGRRCLLIVDEAQNLTAKAVEELRMLSNFQ
FGQQALLQTFLVGQPEFRTILQSPTMQQLRQRVTATCHIGPMDKDETRGY
VEHRLKCAGAKGRPSFDDFAFEAIFKASGGIPRRINLTCDRLLLFGFLGN
KDAFGVEDVNEVVNEINDESAVPVKPSASAGSTPDDAPVQSLSGFEAGDI
DSTKLQAGSALAGALCSQIDGLSAEQYDGRLRRLELSMLRIERINLEVLA
MLQKMVMAARKPSQESHS
>Rfer_1265 methylation
MKRSMQRGFTLIELMIVVAIIGILAAVALPAYQDYTIRAKMSEVILAASA
CRTSVTETRQTINSASLPTAGKWGCEASNPTTKYVKSIKTDDFGAIAVEV
ETANLSQVTGSVFLVPTVVSGAITGWECGPSTSGIAKYLPGSCRSTIATG
YTVVGSWAAN
>Rfer_2660 methylation
MDTQTTCPCATPIRRPAPNRAQGGFSIVEVLVAIIILSVGMLGAVGMQAT
AMQSNKEARNQAAATTFARELAEKMRGNHTVAIKADSAENPYIFDATLNI
NDTIPTPTVNCFLDGCPTVKDAATWDVADWQGRVQATLPTPRVKVCFDQT
PFDSAGKPQWDCTDDGDIAVLKMSWTRKNTAGTLEFAGSTGIPVVVVPLT
AGSSE
>Rfer_1157 MotA/TolQ/ExbB proton channel
MNQDLSILRLVLNASVVVQLVMLLLVVVSMASWAAIFRKLFALKRVKLLN
DTFEREFWSGTSLNDLFSAAAQNARDSGPLERIFASGMREYQKLRERHIT
DASTLMDGARRAMRASYQRELDVVEANLSFLASVGSVSPYLGLFGTVWGI
MHAFTGLASMQTVTLATVAPGIAEALVATAIGLFAAIPAVVAYNRFAHDI
DRIAIRLETFIEEFSNILQRNVSAQSASGH
>Rfer_2903 type II secretion system protein
MATEKSKKIKEFVFEWEGKDRNGKQVRGETRAVGEHQVQSMLRRQGVMST
KIKKRRMRAGKSIKPKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPS
VTKLLNDIRTDVETGTSLSVAFRKFPLYFDNLYCNLIEAGESAGILDQLL
DRLAVYMEKTEAIKSKIKSALMYPISVLIVAFVVTAVIMIFVVPAFKEVF
SNFGADLPAPTLVVIAISEIFVKYWWLIFGAIGGGFYFFMQAWRRNEKMQ
HVMDRIMLKMPIFGVLVDKSCIARWTRTLSTMFAAGVPLVEALDSVGGAA
GNSVYEIATKKIQQEVSTGTALTVAMTNTNLFPSMVLQMCSIGEESGSID
HMLGKAADFYEAEVDDMVAGISSLMEPIIIVILGVVIGGIVVAMYLPIFK
LGQVV
>Rfer_2063 toluene tolerance
MNRRLWARLLVTLLMSAASLLALPARAADEAADTLIKRLFTEVLDSIKAD
KAIRAGDTSRIAALVDAKIMPNVNFQRMTASAVGPAWRQATPEQQKRLQD
EFKILLLRTYAGALTQVSDQTIAVKPLRVAADDKETVVRTEVKGRGDPVQ
LDYRLEKTSGEGLGWKIYNLNVMGVWLVETYRSQFAQEINGKGIDGLIAS
LSTRNKANAGR
>Rfer_2920 Fimbrial assembly
MILINLLPHREAARKLRKDVFNVSLGLAALAGGLLAGIIFLAFQSLISDQ
QGRNQLLQTEIKRFDAQIKEIAGLESEITALRARQQAVEDLQADRNLPVH
LLTELVKQLPDGVYIVSMRQDNQTVTLQGVAQSNERVSELLRNLGNNTPW
FSKPELVEIVAGTVTLAPREQRRVANFTIRVRLMRASEAEKSRVAAATAN
PVPVAATPVKK
>Rfer_0924 CheW protein
MSQQIATASGTATFQGAPMAAAATSICEFLAFKLGSEEYGIDILRVQEIR
SYEVPTRMANAPTHVKGVINLRGVIVPILDLRMKFNLEQVNYDSFTVVIV
LNLGARVVGMVVDGVSDVITLTPEQLRPVPEFSSAVSSDHLLAIGSVGER
MLILLDIEKLMTSAEMGLVAQTLQ
>Rfer_0630 flagellin-like
MPSVINTNISSLTAQRNLGMSQASLATAMQRLSSGLRINSAKDDAAGLAI
SERMTTQIRGSNQAARNANDGISLAQTAEGDLAQIGNNLQRMRELAVQSA
NATNSSSDRAALDGEVQALSAEIDRAAQNSSFNGTKLLDGSFTAQKFQVG
ANNTANDSITIAAIASARTSVLGGYTTTKAGGVTTAALTAGALTLNGTSV
GASAATSIPGQSASSAYSIAAAINAVSGQSGVTATAQATAVTGAVQTAFT
AITTGATLTVNGIQVGSIAAGGAAPAQGANVAAAINLVSSQSGVTASAAA
DGKVTLTAADGRDIALGAGWVAADSGLTASATTVGTVTLDSTSSAGITIA
GTAPASAGFTAGTTLATATKISSMNVLTAAAATAALGTIDGALETVSASR
AALGAYQNRFTSVVTSLQTTSENLSASRSRIQDADFAAETANLSRAQILQ
QAGTAMVAQANQLPQGVLSLLK
>Rfer_2092 TolB-like
MQMMKKRILLCLLVGMTCLPVLAQFRVEVSGVGLTQLPIAVSAFRGQDSV
PQKIAAIVQADLERSGQFRGVDTVGAALDEGTRPDVALWRQKGADSLVTG
SVSRLADGRYDVRFRLWDVVRGQDLGGQSYAVTQADLRLSAHRIADFIYE
KLTGDKGAFSTRITYVTKAAQRYQLWVADADGENAQSALASPEPIISPAW
SPNGSQIAYVSFESRKPVVYTHDVATGKRRLIANFRGSNSAPAWSPDGRT
LAVTLSRDGGSQLYAIDAGGGEPRRLAQNSSIDTEPVYAPDGKNIYFVSD
RGGAPQIYRMPVTGGGAERVTFTGTYNISPAISPDGRWLAYISRVSGAFK
LHVLELASGAVTAITDTTADESPSFAPNSRLIVYATQSQGREALMTATVD
GKVKARLAGQNGDIREPGWGPFQKQ
>Rfer_2064 RND efflux system, outer membrane lipoprotein, NodT
MNNHRSQTLPMKTPHLSLARPVTHGLALAAVAAAALLAGCSMMPAYERPA
APIAAQWPDASTATKNQASTPAADLAWQDFVGDTPLRELIRLALANNRDL
RVAVLNMEQVRAAYQIRRADQFPTLNLAATGLRQPSTNGSGGISSVYTAG
LAMASWEIDFFGRVASLKESALAQYLASDEARQAAQTSLIAAVANTWLSL
QTNDELLALTQRTLVTRDDSLRLTKLRLDNGAASALDFRQAESLTAQARA
TLAQQRRLRALDVNALTLLVGQPLPDTLLATSATAPVFRDMPAGLPSDLL
TRRPDIRQAEQQLIAANASIGAARAAFFPRISLTASAGSASSELSGLFKN
GSWGWTLAPQALLPIFDAGRNQANLDASNAGRDIAVAQYEKAIQSAFREV
ADALAGRATLDEQVQAQQVQLDAEADRFRLADLRYRNGVASYLDILDAQR
SLFAIQQGVAQTKLAYLQNQVTLYKALGGGASDRDAVEKSALQKKEVRP