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# Synechococcus sp. JA-3-3Ab, JA-3-3Ab

>CYA_2273 putative general secretory pathway protein
MTNPDTSLAVGQHSIVDRARVPVLIAQYLPVEICIYYQVVPLALDTDSLI
LGMVDPQDLAALDYVSKMLAYSQISVEPIPITFEQQQDLIAYYFSHPPSP
AEVEQLRLQAQASRVTREVPAPVAEPPSRLTPTQPLPARPTAPPLPVDES
EETAQQLLNSMLRRALEEKAEQIFVEPQEGLVCRVRYRQQGILRDLFKDL
SESIRAKLIAAMKRMMALDAGLIGEPQQAEAERMYRGEPLVLQLRIIPQR
SKSGQVSSSREGAILSILRGETLHKYQQGQNRLRVSETVALAQQAHQLLQ
QLQAALSTTIEKLKQYPTPPGSDWPLMTEMLAAIQAQAQMIAIRQQDWEK
LNSGS
>CYA_2880 conserved hypothetical protein
MKAWQALADWTGIVGLGVVAIGLLVGAALTGWTAVPLSLMATGLALVVVW
GLTHRKEVSLFLGLRSTQTNANILVAAAAMAVILVLLNVVAVRYDLRLDL
TEEGLFTLSPQTRQLVQGLAQPMKVWVVTTAPDPNLREQLERYRRLNPER
FQFEFVDPNRDPLTVQRLQVTQNNTLVVESGNNRQQLPQPPAPELESKLT
PVLAKVVNRGEVVAYFVQGHGEVSLEAREGTPTLAQAVAALGQEGYRVEP
LNLVQSQIPEEADVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRV
DAGLDPLLEEWGVVLGDDFIIEVSSVSQLLGTGPAVALVTTYGDHPITAP
LAEQRLMTLFPLARSVDTEVREGIQATPLLRTSPQSWGETSPNLEAGPLQ
FDPDQDKPGPLTLGVALTRQVKGDQKTSESQEGPTEARLVVIGNVNFALD
GNLRQQGNRDLFLNTLNWLTERTEQISIRPKSITDRRLAVTGQNFRWLVL
GSTVLLPLVALGSGAVLWWQRR
>CYA_0177 pilin domain protein
MLCRRATKAPHVMTLIKLLAVIVIVGILSAISIPNFLNHIRRSRVAEAQT
ALAAIGGASEVFRMDFMVYPPAYADIEFGGIHRDRYLQDPWQAPNYSWSC
SSHCQLKRRSLDD
>CYA_2503 glycosyl transferase, group 2
MDIRRRTGSNLGQVLTRLSYLSTPEYLSILAHLLGYPSVSELMGTGLLYR
DESLSRQFEPELMMRHLFYPLNWTDENTLTVMVNDPLDWAVDELLYSWRP
GLRIEKVLGSEQDITQLLSQDQGSRFSQEAVYKLLTRLPEESASRVFTPS
QIAVGYGLLVLLLWGLASAPWTTLTILVLLVNLFYVASIFFKFVLSLVGS
ADRFHQITDEEVAALDDHTLPIYTILVPVYKEPEVMPILINSLSKLDYPH
ERLDVIILLEENDQATIEAARAAKPPRYVRLLIVPDSKPKTKPKACNYGL
AFARGEYLTIYDAEDIPDPDQLKKAVIAFKKGDPSLVCVQAALNYFNRNE
NFLTRMFTLEYSYWFDYLLPGLETLKMPIPLGGTSNHFRTDRLRELQGWD
PFNVTEDADLGIRASQHGYTVGVINSTTYEEANCALKNWIRQRSRWIKGY
MQTWLVHNRHPLRSLRKLGLKNWLAYQFFIGGSFFTFLTSPIMWLLFFYW
LLTRAHWLQNIFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFY
ALLNPIYWQLHSIAAYMALWQLFTKPFYWEKTIHGISKFTHAKVQEATQK
AG
>CYA_2314 hypothetical protein
MQSKDRFDQIDFRLDRLVGAVLTLAETVSFVKDDLTHLKAIVQQQVLISQ
EQSTWLGELKAICQQQADTARRQSETIERIIAHLLPAQDPKS
>CYA_1965 type IV pilus assembly protein PilB
MSDLPSPPFTSRRAGAASKALAIANVSITPFGRKLKELGFADDKQIQDIQ
NALKADREGGSKALALVVKEIVGKEITPDLERAYKRQQLFELKIIYGIPP
LDIDLEPVEISEMIGLIDSLLPLDICNRYKFLPIRRQDNQVLVAMVRPDN
LQALDDIQRRFRIQGLKLQRRVFTQRDFDALINRYMDAQAELLAIKGIND
AAAPVQEEEEVVVNIAELDLDSIEDVAVDEAGEGSLEQQVKSADDAPIIK
LSNQILVKALQDGASDIHIEPQEEYLRIRFRKDGVLRQAFENFPKKIVPA
LTARFKIMSNLNIAERRLPQDGRIRRVFKGRKVDFRVSTLPSRYGEKIVL
RILDNSATQLGLDKLITDPETLASFKEVVRRPFGLILVTGPTGSGKTTTL
YSALAEVNDPGINISTAEDPIEYSLPGITQVQVIREKGMDFAMILRAFLR
QDPDVILVGETRDHETAKTAIEASLTGHLVLTTLHTNDAPGAIARLTEMG
IEPFMISSSLLGVLAQRLMRRVCTECRIPYHPTSEELARYGLSLSGDGEQ
LTFYKANKLSPKEIEQRKATGKPICEKCGGVGYKGRVGVYEFMRMNDRLA
ELINKGAPTEVIKEAAVESGMKTLLAYSLMLVKQGLTTLEEVDRVILTDK
GLETELKARAKALSTCRNCGAALQVDWMDCPYCLTPKF
>CYA_2866 conserved hypothetical protein
MTIKPLELLQVLISRTEFTDEDRKILQQSADWGSSIATEMSDAFYGYLDR
DAEMAAVIAKHNRQRLGQTFTDWFKEMFTGMDNWGPQYAERRWKIGLVHV
RVGIGPQHVVPAMATVVQEVSRRLVKEGKPEQLRMSLSKVCMIDLSFIEQ
AYLEVAYNAVQQETGMSEALFKRLIATGASNLAS
>CYA_2156 putative methyl-accepting chemotaxis protein, truncation
MGNLGALEQKAVAAQERERSEALQRELLQLISEVTEASRGDLTVRAQLTA
RQVGIMADFFNVIIESLRDIVIQVQQAAGQVNQSIGRDEAAIRELAEAAL
RQATQIEETLRSVEQMTLSIEEVADKAQQAATVAESAAATAINSSLTMDR
TVQNILQLRETVAETAKKVKRLGESSQQISKVVSLINQIALKTNLLAVNA
SIEAARAGEEGRGFAVVAEEVGALAAQSAEATREIERIVEGIQRETGEVV
QAMETSTGQVVEGTRLVEAAKQSLGQIVEVSRQVNQLFQAIARSTDAQAD
ASQTVRQLMQQIANIAAQTAAASQQVANSLQATVAVARQLQTSVSTFKVG
EAV
>CYA_2160 CheW domain protein
MAVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTL
LPNQPAWVLGLFNYRNRILWGLDLPQFLGLEPLDFGQPEHHLVVMRPEFG
GSASPVRTGLGLATQHVKGVARVPAEEIQPLTKAQAAQNNFRLENFYDSC
KGLVLEGDEPLWVLDPLAIVQKLNSVDSSANP
>CYA_1774 hypothetical protein
MLSSVQRKCISTSCWNWLWSGSTAARFAPWIEPVLIFQAPQAIPARHCLE
WRSPPPLTAAMSSRSSDWFTRARHIFYGTATALVEILQDPEKRAENLNRL
SMDLAQLAAELEQKGELIEQEAVRYVESLRDPAANAPATVPDSERPAPAE
STPPTTASPAGSAPISKEEMAELMELIHQIESLRLDLERLRTEPPSASS
>CYA_2155 sensor histindine kinase/response regulator
MPVSCRLLCPPSRWGRRFSIGPNPTSLDPREWQVRLQFLDEAQAYLDTLE
AGVLGLGSQSLDRPRLDRLLRAAHSIKGGAAMMGFPVLSDLAHRLEDGFK
ILQVDPQKADPAVERNLLAALDCMRQIAQQHRQQRLLDESWLAERVQPLF
DQLREQLGELQPEDNVQVLAAEAGGDMRVLLFATEVEACLQRLEGVLAHP
EQPCLREEFLIAAQELGALGEMLDLPAFATLCGSVVQALETLPPNAKEQV
LPVAQAALQAWRRSQALVLVGQVALLPSSWDPAEPPVSPPPEAPPPAMAG
ATELPDSIPAGAKSAAEMLRVPARPLEQLGELLGELIGERNRLNSRLQRL
RELVSLFKRRVRTLEETNSRLRSSYDRVAATVPASVLLKKEGDPGLTLAD
TFDLLEMDRYGEMHLLTQEVMETVVQIDEVTHDIDTTLQETEGSARQLSR
LSRQMQTRLDQVRMQPLSDLTDRFPRALRELSLAHGKPVELRVLGGSTLI
ERSILEALADPLLHLVRNAFDHGIEAPDTRLAQGKPAKGLIEIAASQRGN
RTLITVRDDGAGICLDKIRARALQIGFSAADLAEASSQELLELIFQPGFS
TAERVSELSGRGVGLDVVRTNLQRIGGQVQVESWPGRGTLFTLTLPVSLS
VTRVLLTECQGLMLAFPANAVEELLIPPQLPADSFLWEGEQIPLIPVGHW
FRFARWQPRREIDETPLLDRPVVLLVVEDNRPYGLLVDRFWREQEVTLRP
VEGGLPLPSGFSGCTVLADGRIALFVDPPALLSWLLAQRDQPCQSARDPL
PQPRFAAQPTLLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQR
GIPIRAVITDIEMPRLDGFGLLAQIRAHPLYDQLPVVMLTSRSGEKHRQL
AQRLGASAYLSKPFQEQELIQKLRQLLQPASSAPSTGVLMAR
>CYA_2742 sensor histidine kinase/response regulator
MNEEAQKRILGYFIEEARDHLATIEQGLLSLRDSVSDPELINELFRAAHS
IKGGAAMLALASIQRTAHRLEDFFNVFRSRPGEVPVDQHLETLLLRVFDG
LAALLDELQSPRGLTQEFSNATLAELEPVFQETENYIQSLLGAGPVASSA
PAAPPPPAARTLQQEMAEVVPQQLRQMLELFKRGDQPGIREQLREANAVL
KQIGQAHHLAGWQQLTETFEQALGNPDADLRTLALVALRDLKQGQQLILA
GRAEEVTASAELQQLARPAAPAPPPDPLEVVVHQQIPALLRQMLELFKRP
DDPATRPALQSLAQSLQQVGQAEGVDLGGWTALARLIGEILADPAQDLRQ
LALPVLRDLKQAHQALASGAAQTIQPSAELLAFRPVLPALEEPEPLFLEP
ESTPAPADWAAAGIPAEESSAPDGSQEEPEPGEAIPVEATLQAEEAAWDL
LAEQPPSTLEMDSVLAGEEGPGLSWPEMSTEALPEEDWQAAADLAQEGVA
APEEAAAARGWLQDRLSFGSGDFDAPPLSLEAEASAAFDELFANAEQLSD
IEEPPPELIPPSPEPFSQALEELSPEEGGAETDLAELFAEVMGEAAAELS
PVEPAELTGAEETSQAIWDVPAQERAAQVAAESPEEASAADEAASVGVEA
LFELEELAVESSPLQELSQLPDFGAAPDSGPEADLWAEEPSPSLQPGDGE
AAADLWAEFPADIWPGDFSVPDETGSLTSLDSAAEGGLESLVSAADQAWW
SPEEAGEPSPSFEVASQPSSDLADSAAVEQLEDLFAEESSPGEPAAAAES
FLAPSDESTAAETPDLGAELSLADLFAGETLEDAPGTGDAAQAQDWALLE
NLFPVQEEALYPEGQPAEAFDRLEALFAEEPATEALSLETSGSLSAMDGE
VDLDELSRFFAEGEAAQEAIPSDLATFLGEAEALQGSSLEGVTLPEPEPL
VAAAEQGGASQPAEDDLASQLESLFAEDELLAAQSATVSPDETQPLEEEA
PEASPAPSLDDLAALFDAAEPAVPPELEEVIAPIVGSPTAVSGEVADDFA
AQLESLLGDLEVAPQVSAAAPAPSPPAVAAPATAAPTAPATPTAPTTRRS
ALSNPVMRVEVRHLDSINNLVGELVVIRNSMEQNQTRLRQFLDGLLGRVQ
QLGELGQRMRDQYDRSLLEAALFSSRSSAATVGFGRNGEESPRGRVGHSI
GQEFDKLEMDQFTAFHTLAQEIIELIVRVRESSSDIEFAVDEAEQITRQF
RQVTTQLQEGLNRARMVPFSQIADRLPRAVRDLSIKTGKQASLVVEGRDT
LIDKAILEELSDPMTHLVNNALVHGIEPPEERRRLGKPPEGKITVKAFYQ
GNQTIIVVADDGAGIPVEKIKAKAQRLGLLSEQATEEEVFNVLFHPGFSV
REASEVDDLAGRGVGLDVVRRNITDLRGSIQVDSVRGKGTTFTIRLPLTL
SISKAMVCVSDKALIAFPLDGVEEMLDVPVDEVQPDEQGRPSIPWRDQRL
PFQPLSNLLSYSRSHSRSRSEVYSIAQEEGILPIVVLQSAGQYVALQVDS
FVEEQEIVIKQLRGPVPKPPGISGATVLGNGRVLPIADVLELVDMAQGRR
RDLSRLWAERRAAEPRAEETHQTTVLIVDDSIAVRELLSMSFQKVGYRVE
QARDGQDAWEKLRGGLRCDLIFCDIEMPRMDGLELLSRIRADSNLRHIPV
AMLTSRGAERHRQTARELGATAYFTKPYLEEELFSAAARMLQGEQLLAPN
PTS
>CYA_2741 putative methyl-accepting chemotaxis protein
MVSSANNQRDFTEAMVAFWQGDYVEAVRLFNQVAAAQPQDTAVKLLLASA
QKQAGQLLEARHTYDTILKTASDPEELESARRGLEELLQMAPELADVPSP
AQEDKLQPQGEFPPQPEEADPFPQFEFEAMREQEADPFAQDLFSMRSDSF
AADEMTFGEEESFADPFETRLEMEPADPFASSHPLPANPQVTPPAVPGET
ALRAGREQPQTDPVVDDDFAFLSEFDRQHLQDLDSDSITQLAGDAAFPEE
MGFSLPTFGEEEVGSLDEGLPTELATPMSEPIPAPEEDTAGPGPALFELN
ELDSLDRELAGMEGGEVPVFSPDEGETQEAGGTARSSPTISMPLPGGQGA
GMFAGIANRPLADRQLATALIQGAVSLAAGLAIGLGIPANGGARLLAGVI
GGGVIGTGAGVVLGASSAKHIRSTAQELASHFAALAQGNYSVRAEARGDD
ELGRLANSFNQMAAALEAHFADLSQRAAEQGQAKEDLQRQVIRLLDDVEG
AARGDLTVRAEVTADVLGAVADSFNLTIRSLRDIVVQVKRAAAAVNDAAL
QSENFARSLSADALRQAEEISNSLNSIQEMTESIQEVASNAREAANVTAQ
ATEAAARGGEAVDRTVASILEIREMAAETTRKVKRLAESSQEISKIVALI
SQIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADRAAKASKEIE
QIVLQIQSETSNVMTAMEEGTQVVIQGTRRAEQAKSSLDEIIEVSRRIDG
LVRAISQATVQQTETSRAVAQVMQSVELTANETSEEAQKVASSLQQLVSI
ARELQASVGRFRVGDE
>CYA_2740 cheW, chemotaxis protein cheW
MEAPEGELFLKFKVATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLG
TLNLRGEIIWVADLGQFLGISPPLNLDRAELPVVAVMDQPDLLMGLAVDL
IVGMEWLKTEAVRPVLVAPESIAPFLRGEWVVPATGARLPLLDQSAILRS
DRWG
>CYA_1318 gspO, prepilin peptidase
MVDFLASTWELRLLVWVLVLVLGACVGSFLNVVVYRLPQGLSLLHPGSHC
PHCKTPLGPMENIPILGWFLLRGRCRHCGAQISWRYPAVEALTMGLFGLS
IAILGFSPRGLLTCVLLGWLLALALVDLDTFWLPESLTRSGLLAGLLARL
ALPWLEGSGSLAAMGWSLVAGIAGAVLGIWLLEGIGFVARWVLRREAMGG
GDGKLLALIGMWLGWQGVLVALILGSGLGLLGSLLAMAGGRARLGKPIPF
GPYLALGGAVAALAGSPLIEAYLRWSGLLG
>CYA_1967 pilC, type IV pilus assembly protein PilC
MPRYKVRGLKAGQPVRLTVVANNLTEARARLRREGVFAKPEDIQEEKPFF
SLETSFDFSMLGSIDIRDKAVFSRQFAALINAGVSMVRSLTIMEEQTGNP
KLKKYLRAIRAEVEAGKNLSDSIRPYPDAFDGLYCSMVQAGEVGGVLDEV
LNRLAKLLEDMDRLQKQIKSAMTYPVVVTILAVLIFLGMVLFILPTFESI
YNDLGGELPAFTQFFINISKFLRTPQYSLGLVGFLVAVFFAFRRFYRTPA
GKETIDALALKLPIFGDLIQKSAVARFCRTFGALTRSGVPVLTSLEIVRD
TSGNQVVANAIDAARQSISEGGQIAPALDKAKVFPIMAIQMISVGEETGE
LDAMLMKTADFYELEVEEAVRALTSLLEPLMIVILGGMVGCIIVAMYLPM
FNVFELVK
>CYA_0993 pilM, type 4 fimbrial biogenesis protein PilM
MFGFLGGSKTQTMLGVDINPECLAVAQVKKQGNGRYRLVHYHSVEMPEGA
VIEGRILDPSTVGLTLANLLNEYKVPTSLPVATAVPVREAIVRLIRLPAD
LPADELRRVVLEQEAELYIPYPRDQADVDYQPLGLDLSQDGIERIEVLLA
AIPKEVVDNYLAVLQAANLKARCVELASFSLIRTIRDQLIQYSPQEAVLL
SSIGYDSSEISILVNGIPQFTRTVNIGTIHMRQVLAQALNLPVSRTGDLL
RTLRLPLINPADVLATGEQPVPSNPGVAAVARVVSDLADELRRSIDFFTS
AESNSPVVKVLLAGPGAAIGQMDGFLSQSLSLAVELADPFGSILIPDSIE
VPLEERPAMGVALGLAMREASK
>CYA_0994 pilN, type 4 fimbrial biogenesis protein PilN
MYTPEINFLKERPEVPTTVQTGGVVAGPETAAGAESWALAIGLGVAVAAV
AMGAFLYFQDSFSRQRNTLRAERTRLDGELSTANAELTRLQGLSQELQTI
RTQTEGFRSFLGSVQPWSAILEELRRRIPGQGVWITNISASGDTVNIQGG
ALDFPLVNDFLLTLLDSNFVTSAVLNSASRVEGTPETEPSVTYGLTVTIR
TIGDPDPELTRELEQRGAIGLVEKIRILRQVEGN
>CYA_1966 pilT-1, twitching motility protein
MIEDLMEEIVRRGGSDIHISAGLPPYFRINGELQPTEHEPLTPEEVQRLI
FSMLNNTQRKHLEQNWELDCSYGVRGIGRFRVNVYRDRGTYACAMRALAS
EIPNIDKLGLPDVCKEMARLPRGLVLVTGPTGSGKSTTLAAIIDFINRER
AEHILTIEDPIEYIYTPIRSIIHQRQLGEDTKSFANALRAAMREDPDVIL
IGEMRDLETIQLAITAAETGHLCFATVHTSSAAQTVDRLVDVFPPEQQQQ
IRVQLSNSLKAVFSQTLARRLNPKPGEPGRVLVQEIMVVTPAIANLIREG
KTAQIYSAIQTGGKQGMKTLEQDLANLYLQGKIDFETAMSKTSRPEELQR
LLGNVAGPSPAAAAQHQRPAGVAVRR
>CYA_2791 pilT-2, twitching mobility protein PilT
MLGRAAPPPVGSGSRPVPSAPKPILGRPVPPDVAVAPPQTPVPMPGPATP
PQMSPPPPAPAARPQVSPPSPGSAAPPFGPPARPTAAGRIPVAAAAPKSA
PAGPTLRQLVQEAYEKGYSDIHLGVGEVPRFRDRGQIVIGNYPVTTTEVF
YSWLRESLPENQIRQFEECLELDTAIQYEGLVRCRVNCFVSLLGPAMVLR
LIPLKILTLEQLRAPEVLKRIAEEHKGLVLVTGPTGSGKSTTLAAMVDYI
NSNFAKHIISIEDPIEFVHQSKKSLVRQREVGIHTLEFANALKASLREDP
DIILIGEMRDRETVDTALKAGQTGHLVFGTLHTNSAVRTIERLLGIYRPE
EQEPMRLQLAETLVAIIAQTLVRTTDGKRTAAHEIMRNTDAIRDYIKRGA
VDEIEELIADGSYEGMCTMNQSLFRLYQEGRITEEVCLEAAPRRNEMAQW
LRGRI
>CYA_1943 psbP, photosystem II oxygen evolving complex protein PsbP
MLLLLCVCLSLLTGACSAGSNLRAYRDPGGAFAFAYPNGMVAVNLGPGKG
PAVLLRDLVYETENVSLMIAPFDKGETIADLGGPDEVGQLVAEKIIAPEG
SGRSTKLLAAEAFERQGRPYYLFEYQTDIGSQLRHEVVTVTVRHHRLYTL
TASTQESRWPQVQAAFRNVGHSLNVS