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# Thiomicrospira denitrificans ATCC 33889, ATCC 33889

>Tmden_1123 Flageller protein FlgA
MFIKILFLPLILLNLYANNALEGVYYVDSKDVKISTVIPHVKSDFSILTI
EENRYSQRIKSKEFIELLSKHGYKNYTSKSSYINFILKSPINTSKLEQRL
EEYYKKSYENIDIKSIHVEPRGYLSSLPEVYTIQLRDDDFLSDRGVISIK
TDDNKKLFFDYNIIANVEVYKSKDSLKKDTNLSPSNTFKKSVRLDRFRDK
PLQNIYKTSLQVKRHIQKDAILTIRDVEIADVVKRDSNINVTMHRDGMDI
TFSAKAQKDAKVNDIINVQNSSGKILKVKVTGSNSAEIE
>Tmden_0669 Flagellar biosynthetic protein FlhB
MADDAEKTEEPTSKKIEDARKEGNVPKSQDASGVMTLFVAILAFLMLFPY
MLSHILSIFKYYFSLIGMTIDRALMLDIAIVTIKEIFLIIMPLSIAVAIA
GVIAAISQFGFLFTTKSITPDLKKLDPIKGMKNLFSMKKLIDGIKITFKS
FTTLGIGFVFFFLFIMELPTVALFGFTDQMIWLRDKAIIIAFVMLLIIFI
FAVIDIVIVRKQYFDGLKMSKQEIKDEMKNMDGDPLIKGKIRQIQMEASR
KRMMSAVPEADVVITNPTHYAVAIKYDEQKSHAPIVVAKGMDNIAQQIKK
IARENGVHIVQNPPLARSLYAEVELDKPIPSELFGAVAEVLAYIYKMNKK
>Tmden_1178 methyl-accepting chemotaxis sensory transducer
MLSTIKSRIIITILLFGTLAVGLMYFYISYTFNDFSNKTANKSLDMLSQS
IFQTVTQSMLAGDPKVVQNTVQEAKKIHGIEALDVSKSKLTLELYARENE
TFTNDAMIREVLESKKAKIIEKTESSHHTIELLKPMVAEQNCIACHANAK
EGDALGVMSLTVSLDANDTEIRDTKNILLITLSTVFIIFILIINTFFKKE
VIAPIDELRKRIRALVDGDKDLTRRIEVLRKNEFAASAYAVNDFVTTVQD
TVNEVKSLGRENVSIADKITKSSSSIFQTIQEESAIVLETTHKSKSIKDI
LDNSILIAKETQEKVLQADRNLESSKEALSELVHEVDTFIEIENDLSLKL
LGLKHDADQVKSVLLVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVAD
EVRKLAERTQRSLVEIEMSVSTIVQSINDVSDKMHENAKGMEKLTNISHN
VEDKINDTSYEMKNSVAVARRSVEDSQMMVKHTDEIIFQINEINNHSSLN
KQRVTSITDESKRLLEVANSLESRINEFKS
>Tmden_1017 Flagellar transport protein FliP
MFRIFLSILMLSAISLFGADSVAIPTMNFELSAPKTPEQLVSSLNVLVLL
TLLFLAPSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTF
FVMEPVGIKAYEDGIKPYIEEKIGYEEAFDKTALPFKNFMIRNTREKDLA
LFFRIRKMQNPTTIAEVPLSIIIPAFVISELKTAFEIGFLLFLPFLVIDM
VVASILMSMGMMMLPPVMIALPFKILIFILIDGWNLLIGNLIASIK
>Tmden_0733 Flagellar L-ring protein
MIRNFLLFFMPIYAILFLSGCTANLSDPEIDFEPPAYVEEMPSKEDNKDF
TSVGSVFGQGENPLFSDHKAMHVNDIVTVIISENTQSSNSGSKQISESDS
LNLGGGAFTSAGTNSAVNSAVSKLNGIANLGFGSTSDSAYKGQGSATKDA
SFTTTVSARIVKVLQNGNYFISGKREILVDNQKQIIQIGGVIRPYDIDQG
NRINSSQMSEAKILYKTQGDVERATDRGWGTKIIQSVWPF
>Tmden_1798 Flagellar biosynthesis protein FliR
MTWPQVFSDTYIVGFILLFFRFAALFIAVPIFSHNNIPISIKTSLAFFFT
IVFYSSMPPLTMVITVPSIVMAILSELLFGLAIGVILQIAFNAITFAGGQ
ISFMMGFSMASAIDPQSGISMPIISQFLSLMALMMLFAIDMHHWILLFID
SSLQNIPLGGFVMSENLFTYIIKAMSNMFLVGFMIAFPITALGLLADIIF
GMLMKTMPQFNLLVIGFPIKIMVSFAVLIATISAIMLIIKGQMVEAFNFL
EMFF
>Tmden_0551 hypothetical protein
MLGQAKGVRANYAKNKDIYSQNAEYGEESKQQATNAKIAAQGGIAAAVTV
DVKDASMKAAEQAGNVGRKWDNIHDAKFLENQIAGLESAGADMSEFKGKE
GLDYLKQIGSSQAMKAMMKDSIVDANGKSVSFATGKDGHVGMVSVDGQTK
MANGVSVETGGAVAALAEGFNMTEAAIKDGHHVDIQNGKLIGNKASKEAF
MKHIGNNQKNQAMVTSAPGEFLTVLQDLAEEFTPEVVADNFGKVAFAAVM
GTAAKKMVVDPLKKSLPPKNTSSSKDISDNSISSNSKESKDSVNHDNTSE
HRNNIKDYTEDYQKSQESRDKEIQNASNLKKQRNKLFEQGKDTSALDDKI
SDSYERAKGHQENMDKADRNIKAEKYIASKNIDKEAMDRKDKNGGSSKAG
WLSALAMPLVNELADVMGVDKSQNLAFSTIEAGSEIIDGGFTAALDVLKA
TGIGGFKALRGDGDAGQYFSKNMSSAASSVMSGFSNANETMATYAIMQEF
NRQQAAPQHQGFSTLPSGHHTMQAVSADMQQQAAQAQITMANNTQALSSI
APNRSYVGLSMTDADQNPVSFTTDKASRNMMINGYNTGMPAQQFGSMMQN
PEAVSQFANAISQTSFSNVEAYNATNNILMDMNAQTQRANMQQKIHNNAS
DTRNAMQHKESLEANSQKSKEEYEI
>Tmden_1680 putative CheA signal transduction histidine kinases, no good domain identification
MGARSDLDSTFDYEIVDEFLEHYSMMVDSMDIMIIDLSKPNMYEQSIDEL
FRVFHNIKSASSYLKISQMAKLAAFVEDALENIRTNHSSANEETINWLLE
ISDMFNAWKNDLTLDKELSRIKFSLLKLPDLENN
>Tmden_0363 Flagellar hook-basal body complex protein FliE
MSPIDGISGISSAELLKQKSKVEGAGGEDFANHLKSAINEVNELQQNSEL
ALGDMATGQVKDLHQAALAIGKAETSMKLMLEIRNKALSAYKELSRTQL
>Tmden_0562 Flagellar P-ring protein
MKKILFLFTASLLLHVTLQAAKISDVASIVGVRDNHLIGYSLVVGLQKTG
DGTTSKFTLQSIANMLKAMNIDMKPIDIKSKNVAAVVVTAELAPFARQGD
KINITVSSIGDAKSLEGGTLLMTPLKGVDGKIYALAQGAVSIGGRNGKGA
GDSHPTAGLIYDGGLVEREIAIDLYNQDYVTLSLKDANFQNSVSIQKTLN
GYYSTEVAVAMDSRTVKLKKPSNKTMIEFLAEVQEINMDYNVQDRIVINE
RTGTIISGVGIHIKPIIMTHGDITIKITEQENPDKPAGSMVVDENMVIGL
NENELYTKEGTTTVANLVRSLQKLGATPKDIISILEAMKSAGSISAELKL
I
>Tmden_1193 MotA/TolQ/ExbB proton channel
MRRLKILKIYGVLWLFIFFIVYSNFSTLYEFFFTTITFNVAVLTTFTIGF
VIIAKASLELVMLTGTFAVMRYKKGQSLEFYLKGIDKIFPENIAQMFAKR
ASHESVYFTHSEVKDVSVWLEDKFTNQKSYISFFISTCLMIGLLGTFAGL
LMALNEMARIVLSLQGDVNIGDVMKRLNGPISGMSVGFGSSLFGVASAII
LSVKGYILEKNQAMFTEDVSDWINSLVIESAVSSDDGVVTSGGGSMSQIM
ALFTEKISEFTQSMDKSNKSNETILKVLSQSIDGESKAAKDEMAALENIS
NGIKDLNINQYQSSSSLVDSIQDLSSATINSGRSIKAMLELQEKNNQLLS
ELLNKLNTEPKA
>Tmden_1530 CheA signal transduction histidine kinases
MDEFQEILQDFLVESFELIEQLDQDLVELETRPDDLELLNRIFRVAHTVK
GASSFLNFDVLTHLTHHMEDVLNRARHGELVILPAIMDVILESIDLMKAL
LHTIRDTSADSGIDVSGCVSRLDKCAKGETNIEVPQTTISTPKATQSEPK
EVKKEVVVETQESDELDYDNMDADELEAEIERLLKQRQEEDKIKREQKAT
NEDGATSETNGTEDEYVPVAKAPAVVTPARRPSSLGDDSDSNDDARAASP
AKKQSNVEQTIRVDVKRLDHLMNLIGELVLAKNRLIKINDDVEERYEGES
FLEELNQVVSIVSIVTTDLQIAVMKTRMLPIGKVFNKFPRMIRDLSRELN
KKIELEISGEDTELDKSIVEEIGDPLVHIIRNSCDHGVEMPKIRLEQGKS
ETGTIKLKAYNEGNQIVIQIDDDGKGLDVDMLKRKSLERGLITEKEADNM
SDKEAFALIFKPGFSTATVVTNVSGRGVGMDVVKTNIEKVNGIIDIDSEL
GIGTSMKLKIPLTLAIIQALLVGVQEEHYAIPLASVLETVRISKDEVYTV
EGRSVMRLREDVLSLVHIGDIFEVERILDSSEYAYVVVLGLGASKLGLIV
DTLVGQEEIVIKSLGEFLKGIEGIAGATIRGDGGVTLIVDVVAIMDMAKH
VKASAIIDSTSDAAMLTLEKTKASDYKIMIVDDSKTDRTIMRKALEPLGV
TLVEAGDGQEALAILKQGDHNFDAMLVDIEMPRMDGYSLAIEIKKYNRYK
NLPLIAVTSRTGKSDRMRGVESGMVEYITKPYSADYLMSVVQRNINFRSE
FLK
>Tmden_0283 methyl-accepting chemotaxis sensory transducer
MFFSKNSDKNRTKELEDEISSLKESLAFYKEIAKFSQEEMLIVFAADGST
LFQNEKALSQIKDSSALYKELQKSSSTISLNDCSGKVVSKKTDDNSAYMY
RITKTDMRDTRESDILTLHQKAITAALTDTQKTFSQMLEELKVMKSESVE
VANDSKDGLFLIQQSAQAMDKLSQNTQLNITGMDSLNQRSGEISTVITLI
QDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQSATKDIS
LVVKAMQQETNEAQTNTNEVNNIVIDTKVKIEDVSLKIKSFEENASRSQY
EVEHISDKIFASLAKIDHVIYKHNVYALIFGEENNFKSTSHTECRLGKWY
SSGIGKDNFSKMPSYAKLETPHAIVHEQANLLASECGEDKVVCSKEIIEK
RIHAIERASDDVFKYLDALVEEKAKEMMHLAAKTLFKTGEKK
>Tmden_0972 methyl-accepting chemotaxis sensory transducer
MKMTFTQKLSMIIAVLVIVAIAIAWSGLSGASSLNDSITNLTKVEAKKLN
EMGIVARNSESCRKNEKNIILSKSVDSINSYANIIHNDRQEMDKLLIGLK
DLMVKAENRSRIETLLSDLKKYDEFISEIKALSIASLGESAEALEAQRKS
IELSATKGLEYGEAVSTNVNTILKNNQDNLNEIDAQTTKDYENLRNLNIG
IAVGGIALALIIALFMVRQMMALISSSVTNVSEGAEQVASASNQISSSSQ
QLAEGAQEQAASVEEITSSLTEIKATIEQNSENAREADMLGKDANEAAKM
GYEHIRELSTSMVEINDSSRKISNIIKTIDEIAFQTNLLALNAAVEAARA
GEHGLGFAVVAEEVRNLAQRSATAAKDTAAIIEKSIDDVRKGNQITEQTN
KAFVEILDKVKKTGDIVGEIAIASKEQATGINQLSEAMSQVDSVTQVIAS
NSEESAAASEEMSAQATTMKITIGDLAGIFGIATSSTHSTKSVLHHQQKP
TLGSNTKQNRKAPLVVATKKPSEVLPLDDDDLREF
>Tmden_0996 Peptidase A24A-like
MELTFTFILALLFGSFLNVVILRVPKDESAVFVNSHCQKCNESLKPWHNI
PIFSWIFLRGKCAFCKSDISIQYPIIELLSALIALGLVFKMGLSLPTLFI
TCSFLTLLALSLIDLRYKMVPDSLNLLALLFGIFGAWSLSGIVLNFQNAL
LFAGSFTLLRFALSYILTSTAKREAKKTLTSWSKNYHTYPFIEAMGEGDI
IVAATMGALLGVKLTLVAIFLSALLALPVMLFALRGSKEEQRVPFVPFLT
AATFIVYIYDSAIMRYIEANY
>Tmden_0971 CheW protein
MAITQKTNKTKLALSSAQKYLSFEINEEMYAVEILDVKEIIAMMKFTKVP
KMPTFVKGVINLRGLVIPIIDIRVKFELSEIEYNERTTIIIGIVEDSLIG
FIVDKTADVLNITQEEMAPPPKFGTAIDTTFLKSMAKTANGVVMIVNLMK
IFSESELNSVKQIEKIQEI
>Tmden_1037 putative flagellin
MRVTGNMYYKNVFGESNSRLSQSLFDVNKQIASGLKIQYAQEDIRAFTET
MRLDNEITTLDQSKKSTVSAMKFSNQTDSVLNEFALSMDRARVLLVKASN
SGVNSEASLDAIAYELRGLETHFKSLANTSINGQYLFSGSAIDTKPIADD
GTYNGNDAILKAFTGSGTSQQYNISGQELFFGEKQSTRREITTNVIQLNL
SSKYPDFTDAAVEGDTKYLKSSDTIRDLMGDTDNFIDVGTNKHFFYITGT
KSNGSSFKEKLPMSDDEKISDLLKKIGDMYGNTPGVDVVNVSMNPSGQII
IEDKIRGSSSIEFHMVGATDFSGGAAANVTNIDDLGVGETSFNSIILGSS
TATNPNLHVKEFLKSSMTSADNVAATNIIEGTLYDRVEFNKSGSKLSSNS
SQIIKGSNAFATLSTKLSEVADLTQGTSGTLDGTSFVLEGMDVNGTPYSA
QIDLATAGSTFTVGGNTYNIFNMGSPRVNAKADEVTYKQLSDVINMVVTG
NLPATFPGTSSEYDTAIKDADLRGRTFLTNDGKLGFEEINASNTKATIAL
YDSNSGDFSVGADASVMTFNSNNALTVRDPKTDFFKTLNDVINAVENYKL
YPDSNSGDARSIGIENAIAMIDELHEHVTRSHSQVGAQTNALSKSLERVE
MLKMSSMTLRSSVIDTDMAEAHLTLAQLNTNYQAMLSTVGKISKLSLVNY
L
>Tmden_1387 type II secretion system protein E
MDRITSDLVANGSITKNQVDRLVAKGIDSNLILRDITISGFMTMDRLIGF
IVDKIQDGEYRLSIVNNYDYIQEKDVLIKLAQNLNLTFLDLDSIDMDYRV
VEKISLTQLKKYYAFPISEDELSITVAFCDPLNIEAKESVQRLFAKKPIK
ITVATKEQIDSYLFKAELKDSIKELVKKISDELNSISSLDEQQKSSSILL
LIDVILSTCIKDRSSDVHIEPTEKNCVIRTRIDGKLVEIFIFEKDIFPPL
ASRLKLLANLDIAEKRKPQDGRFSIMVGTRDYDFRISTLPILYGESIVMR
VLDKQKALVRLEDAGMDSLSYQKFLKSLQIPYGLILVTGPTGSGKTTTLY
GALNELRNIEDKIITVEDPVEYRMNLIQQVQVNPKVGLTFATALRSILRQ
DPNKIMIGEIRDSETLEIAIKASLTGHLVLSTLHTNNSISAVTRMVDMGI
APYLISGSLVAIQAQRLVRKICLNCKVEDKVSSSAFEEVKNLAPAHSKFY
IGKGCKECRGSGYLGREMICEVLVINEKISSLIAKNASAQLIHAQALEDG
FIDLLQNGIDKALFGITTLEEVLRVAK
>Tmden_1653 methyl-accepting chemotaxis sensory transducer
MSNKTKNIIVTLAFGALIASLFLVDSTLVHVAIATLGFIVILVTNIKTLS
SSNTNLLNQKRLELIELMEFKRNKVKIDDTTTNEAEKNFNKIVTTYQASV
LEDTRVAGEMVLLTDKVAKGHYSCRIVSDSKTPYVHILRNSLNNMLNSSE
QNLDIAINTLQKFSQGLFATRSDIHVEAKMADLLNNINQLGQALQDMEAK
NSDSQKTIIESSKKLNDTISTITNSTIKDLKRMIGDAVNRIHNVAQKEDD
MVENLQTLVTNANETKTILATIGDIAEQTNLLALNAAIEAARAGEHGRGF
AVVADEVRKLAERTQKSLAETSATTNVLIQSISESSDALNRNAREVNDIS
SEVSLISNKMDEIIHTLSNLSK
>Tmden_1015 MotA/TolQ/ExbB proton channel
MDLGTVIGIVLIMALLLGAMAMGVGIGPYVDIPSVLIVIGGSIGALMISF
KPSQMKSFVKIFMIAIKPPQEDKIELIKKLVQFSTKARKDGILALESEVN
DEQNAFLKKGLSMAIDGNEPDNIRELLEIEMEQTSTRHKMNGSIFSQWAG
LAGAMGMVGTLIGLVAMLLNMADPSAIGPSMAVALLTTMYGAIIGNVVGN
PIANILGIRNDEESLVKEMILTGIMSIQSGDAPRALEAKLLSYLAPNERV
SQFN
>Tmden_0172 Flagellin-like
MGFRINTNISAMNAHRNAQQTNIGLDKSLGSLSSGLRITKAADDASGMAI
ADSLRQQAQGLGQAVSNANDGIGITQTADGALDEYINIANTIRTKAIQAA
SDGQTLDTRKAIQADIDKLMAEAQNIASTTSFNGQTLLNGGYQNKSFHIG
AYSGEAVKISIEDSRTEKIGKFALAESTTGLTATTGQAGVSTVSLSVTVT
SADGTTSTSTGEAVLTSGAHSSYEIAQMVVDAFNSDAQTDGTNARASVYE
LTSSTAGTAAFGVRVDSSDKFTTTEAGFTIGDATAALTNNFSTIDVTTRE
KAEKAIIISDYTLKDLDSRRSDIGSVQNQLESTIRNISVTQVNVQAAESQ
IRDVDFAAESANFAKFNILAQSGSYAMSQANAVQQNVMRLLQ
>Tmden_0981 methyl-accepting chemotaxis sensory transducer
MFKNLSIYKKMNYFIVMVSSFVFIAALSIYFAMSHIASKYDHLHNNSMMG
ELSTLKIEKNLNYVSRLSRDIMLGGNFDKNIKKLKSTIDEIELLFNDLHK
TIEIDSSRKLLHEAKESTMLFLNSSYNMMKSLSANEIKYEKENVYAAYSQ
ELTPYANASRESFQKLLDLKADELERDSNELGVELNFFKYLVLVAGIIVG
VAVFVLAIAIRKSIISGINEFTLLIGHVAKGDFSHKQNSTNEKDTELGIM
GKELSSLITHTQNLISEINETITEASKGVFEHKISSVGMDGEFVKAIQSV
SMSIEFMKLQHEKSQRDIFNAKISTKSVNVSESLSLIISDLNGNVEDLKI
ITSATKDASSLANESREDISDVVNELNALSQRVTINNESVLEIAQRTNEI
TSVIELITDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTH
KATGEISISIKSLQQDMHEIQESSSNMKETVDKSTNKINEFEETLIKLSE
NSLKMVNYSYGMENSIFIVLAKLEHILYKSRVYNSIISLHKMLDAQDTHE
CELGVWYGGEGRKRFSSTNSYKLIATPHEVVHKNANLNLAFIDKDSEKNT
LKNSQKIIDNFDVMESASLEMFALLDKILQESSSV
>Tmden_1388 type II secretion system protein
MKYFVTTILNKGKKEQIGMYAEDRKEVNELVKLKHSGIILKISQEREPLE
AQFKRFKTTFLSNIKKRKIEQDSLIASIRQLAVMTNAGISIYDSLNEISK
STTDKTLKLVFKKLSEDINSGHSLSKPMNNFRYELGNLCIAMVQLGEKTG
KIDDALFSLANMLEDVRANIIKFKKAMSYPKNVMIAMAVAFSILISYVVP
NFKNMFEKLNTQLPIPTKILLKLEYLFNNYGLYILIFLSISSVIFKYLIN
NNYNIRYGWHKVLLKIYFIKNVIMFATLSRFTLILSELIRAGIPITQALE
TSVSMVENLPLKNKLASVRFAVEKGSSLHVGLEDTKLFENIIIQMISAAE
DSGTLDTMTGKVAEYYKMRFDAVINGLSESIEPVMLFFIASMVLLLALGI
FLPMWDIGNVVMGR
>Tmden_1016 OmpA/MotB
MSLLLCFFVLLLSMSSMDAKKVSEAIGSLSGAMSVLEGGIKTEVSKRRIQ
ESTPIESTDETSEQVNRISAALKEMNEIQEAQASTQGSAAVVSLEEAQDG
FVIELPASLLFKPGSAVIQNEDSLLFLKRVALIIGELPNETTLSVCGHTD
DQGPSVKGPYKDNWELSSARAISVLQELLLDGVDPKRISAAGYAEFSPKA
TNATESGREQNRRVELRFYAGKNADKSKVQQSVLDRAAAQ
>Tmden_0707 Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM
MADILSQEEIDALLDVVDDEDGGGDLFDEMGSDSHTSNRQVTLYDFKRPN
RVSKEQLRAFKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLM
SLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFDASREF
SDIELSLFETILRVMMSTLKDAWGPVMEIFPNIESKESSPNVVQIVAQNE
IVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLASRDLMLNETSTKKSR
NTELHVLLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTI
CVDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKRALENFESIRREKIS
GVKEMVFDEKNRYIEEDDEDEE
>Tmden_1384 type II and III secretion system protein
MKPVKTAIYSTLLTLLISSSVYAADCSYELFSINSKKNTKIIDFVEQLSD
ECNFSIIVTDPNTQNFLNTNLNKTNLNNLTIDEVLNIVLKENNLTYTLQN
NLLRISYLQTKMFDIDYILSERESSSKTDITLSSDGATIYSKKGSRSSTI
QKSETEEINTSGSSAGKSGMNVNSSDKVLFWHELDIEFQHVLNRPQDIYI
AQPPIINKNAGIITVTATLKQMQRFEEYLKKLQDKVQLQVLIDVQLLSVT
LSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGATWDSAYEGDTVEGLL
LRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINNIIKFL
KTQGDVSSISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTT
QNQDLQSVFAGVLLDITPEISDDNMITLKINPSLSETTTDISITPGVERT
MPPDLRRRQLSSVVTLRDGERIILGGLINTSNSIDVNKVPILGDIPILNY
LFKYENRLKTTQELVIVIEPHIVTKRKNNLSLSELGYQTLSSDLLNSTKN
GLDATTNGIREND
>Tmden_0977 CheD, stimulates methylation of MCP proteins
MEYEKKYIHSSQLFVAVRPSVIQTVLGSCVAVCLYDSKMQISGMNHYLLP
LWNNDGLASPKYGNIAISKLIEAMEAVGCQRRDMVAKLFGGASPNNFNAQ
NGMLVGEKNIQIAHHILSEQRIKIVASDLGGTRGRKISLESNSGRVMLKY
VQKTEF
>Tmden_0708 Flagellar motor switch FliN
MSDFIKLFESETVGTIEALIGQAPSMELKERQELSIISSIVPPIVLLNVS
VSGDTNSSAMLALTPRLVASLSDMMMGEDQSNREDVSEDDLDAAKEIASN
IFGAISNSLGAQKELPKLSFNIDNIEYIDENKDVSLENYSKMFVYHFVIG
ETNSLLMLIMDENLSNILFQKDKTLGDDRKNESNKNSATVSLSSDEMSNI
ALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDN
VIAEGEVVIVDGNFGVQITSIGTKRERLNQLKS
>Tmden_0974 CheA signal transduction histidine kinases
MNKHDRVMQIFLNECKEILEEIAPKLLNLEDTPNDKNLINDIFRGIHTLK
GNANSFGFVKLGEFVHHFEDLLSIYRKDESVLDSSEVDLFIRSFDIVGSV
FEYEEDGVDGYPTNYYEILEEIKKALNIKENSKESFEEIVSASSFAHVAQ
ESVIVKKMVEHTQYNLKDIGDKKIYEIKLELDSDIYLRGYNHQIFFRLLE
SLGTLLYSNYIIDENIPTLEEFNTEHSYVKSLYIYLLSDSDEMDILDVFE
FIAQEHEVSLSVVDLKELETLQEKESKEEESQSQETLYVQNGSKEHKSVA
KSSIRVESAKLDELFDSIGELVIAQSYISQNEKIRSINDNELNQYLEMLS
KSTRIIQSKVMSLRMIPIRDTFLKMKRVVRDVSVKTSKEIELILSGEDTE
IDKTMVDKLSEPLIHLLRNSVDHGIEESAHDRVALGKEECGNIYLSAAHK
GSSFVIEIRDDGRGIDTQKILQKAIEKGFAKEGASYTQDEIINFLFCAGF
STANSITDISGRGVGLDAVRQSIEELRGKVTVESELGVGTIFRIILPLTL
AIIDGLTIRVDNEMLIVPTLSVVESFSPIIKDIHYVKGEGEFINYRGEIL
PIVRLNRLLGLNKSKTEFENSTFICIDHERGRYIIQVDELLGRQQVVIKS
LGVLSNNVKEISGAAILGTGQIALILNTEGVRDHLDFEYSA
>Tmden_0989 methyl-accepting chemotaxis sensory transducer
MFNNISIKLKMVLMLIVPITVILVFLGIDGYKNYNEVKLLKQIEEMVAFS
QKSSSLVHNLQKERGASAGFIGSKGEKFSSELQDIRKDTDATHEELSKFY
SSMNKIDYAASLQSKMEKAVANLSKLKEIRDGVSSLGVAVGVPVTYYTNV
NNDFISSIEEIAKMSSNAQMNNLTNAFVNFLASKERAGLERAVLSSTFSR
DNFAEGFYEKLIGLLNAQDIFMNKFLFLAPEELIGFYNQTMGAPEVKEVD
RMRKIALSNPNGGFGIDATYWFATITLKINLLKKVEDEISLHLKNSISEL
QDNALRSMIIGIVLSFVILAFVAGFSFIISNGLTSRIERFKQEIDEIVSS
KDFSKKITSCAADEIGFIQQSANHLACVANTAIEEAKISLQKTQEHSAES
EKRLEANNLTLALTELLNEGAVSGVGSVQEGLSNNMNALVEINDKNARTE
IIVEEVKNSTDEMVHSLSNISQKMNSSKENADQLNSSVIEISNVIALIKD
ISDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQRATNEVELN
INLLKQNSSSMQEFSEQMSVEVSTSLEKLDHFNGSLHDLVDGAKDIQLAN
KKISNELFITLAKLDHIAFKLSGYGAVFKDDHNFKFSDHMNCRFGKWYLA
AGKEAFANTSSYPKVDPIHKVVHDRVRSVPDYIQDGVLKNASKIISSFVE
AEKSSKELFGVLDDMAEEIK
>Tmden_0472 Flagellar FliF M-ring protein
MDFKVLFSQLATLYDKLTKQQKLIISGAVVGIVAFIVFLVVYTEKRDALS
KYETLFDSLSSEDAAKVIEQLEKDNIPYEILDNNIIKVPKNAVYKERIAI
ASLGIPKNSGVGFELFDKQEFGATSFDQNVKYLRAIEGELSRTINSLAPI
ESASVSLALPKETLFVEKQGEPTASVMITLIEGRKLSSKQIRGIKNLVSA
AVPNLSASNVMLIDNDGETLGDDDEMAQMGELSSVQQNFKTKEEKKKQRK
IIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYDPENVVRSEQLSEEK
RDGSAPAEVGGVPGTVSNIGPVEGLASNKTIEKYEKNTGTTNYEVGKTVS
TTKSEFARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALSESDLEALR
ALVSRSIGISEDRGDQISVQNLQFKRADSDPSKERVNQVVSFSQTYLAPF
SELFKYIFVLLLLLILYKKVISPFAQRMLEISKEEDDIGKPILDIEDDED
EDLVEKVQSMRKKVEEQLGVGNHFNEDELKYDVLLEKIKSMTDESPEAVA
HVLQALLTEESDVTTK
>Tmden_2005 Flagellar biosynthesis protein FliQ
MEAKLITLGIDTFKVALMLALPGLLVGMFIGLAVSIFQATTQINEMTLSF
IPKIVGVAIVIILTMPWMLNVMIDFTTEVFNMMPTFVE
>Tmden_0366 N-terminal methylation
MKKAGFTMIELIFVIVILGILSAVALPKFIGVSQQAHDQKIRAFIGTLNR
TVGPSMWAVSIADGTHFGSVTTMCDTTKNLEVYLDKIPEEVTLNACKFNA
VSAAGGTFGINFQDGNATNAPTWIESNTTTGS
>Tmden_0203 Flagellar protein FliS
MKETNGDQKGLNMYGSSAHNIYAQNNVGIESPAKLIEMLYEGVLRFNAQA
KKAINDKNIEKKIYWTNRSIAIVVELVSVLDKSQGEVSDYLNGLYNYQIQ
LLTTASLRGDTTKLDEVSTVFKALLEAWRETT
>Tmden_0031 conserved hypothetical protein
MMIQAFYTGINGIKSHQTSIDVIADNLANTSTLGFRGYTAEFSSLFEKSL
STTADINAGIGLGSRVNAITMNDSVGTLQLSERSTDMAIMGDGWFGIQGE
GSPLYTRDGSFTFDRERDLVTADGYYVLGTMGKNINNGVLSEQLAEIPLA
NVSEQQKLRFPDKLTYPVEPTSEAKFFGNLGVTDNIRVISAKAIDSQSNT
NSIRLEFKKSNPQTSPGVQWDVTATAQSSGVKTEYNEQTSETTYLPDEIY
DTQKGVVSFDNSGIIISNTLSTVNNNGTPVKIDLGSGFNGLISMDNPFSG
SSTSNGTQSGELQGYDINKNAQIVATFSNGMQSAIGSVAVYHFQNDKALE
RAGGSRFSESTNSGKPIFFKDANGKNIVGTDLSNFKLEGSNVRMEVALTE
IIVMQRSYDANSKCITTADQMLQKALSMHR
>Tmden_1503 conserved hypothetical protein
MQISSNTTLPSALKSATPIKTLYTEKISKDEAMEIREQIKQNANAMAFNS
ATVQNTLLGGGNTSKDDYASFQSFLKDIGYNGKPIASLSKDEASELVSKD
GFFGVDQTSKRISDFVINGAGGDEKLLRAGREGMLRGFKEAEEMWGGKLP
EISQETMKRATEMVDKAMYDLGFSVLDKEA
>Tmden_1940 MCP methyltransferase, CheR-type
MFFNFFKKDTSFEPEHKREQIQDYDDISQIANFFKNETGVTFDKQESILK
NKVTTFCKHKEIFSFHELLDSLNRNSTLKQELIDTLTTNETFFYREFKQV
QELVELVKKCSHKVEILCAPSATGEEPYSIAIALLEAGVASESFNILGID
INQEAIQRAKNGVYKERNIRNLSSEQLRKYFKQEGGLYRLNDSVKSRVTF
RVINIFDHSFKNIGNFDFIFCRNMLIYFDKETKIKAKEILQNLRKNKNQE
IFFGHADLF
>Tmden_0988 methyl-accepting chemotaxis sensory transducer
MQKLSIKLRFIILISIPIVAVLALAVGRIFYDISIKQNLEVTKERIIEAE
SLSRAVHYLQIERGVSAGFLASKGQNGSSILQSSRQNSDEALNNIRVTYE
KTKSDISMLNNLNELKQKRDAIDSLSISGLDVGAYYTQIVAALIDTVTII
PSLIDDKDNRNTIQTYTHLVFTKESLGQIRALLNRVFSTNKMEIKEFSML
IGRELILKGNKKKFEALASKELRDSYERIFRGEVVKKTFDIIEEAKKRGI
EGDFGIDSNMWFSTVTSTIELLREVEIEIYKSVYTSINKKIEDASNNIII
LLAGLVICTILFIFFILHLIKISIVKPIDIFKNTLLGIGDSRDLTIKMDE
NSPQELSEMASSFNTLIKTIRELIETSKLSSSENASISHELSTTSLRVGT
NVEKSVAVINEAEKKATHIKDEITAATKDAIKSKEEILKANETLAKARDE
IVSLANKVQSSAEVEVELSHRMQTLSHEANEVKSILDIISDIADQTNLLA
LNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEINATINIIVHGII
EVSTQMDSNSKEIQELASSASNVEEMINNSVSIVKGAVTATDKTVNDFEK
TKIDVDSIVSQVSDINDMSSQNARNVEEIAAAAEHLNVMTDELHVKLEMF
KT
>Tmden_0173 Flagellin-like
MGFRINTNISAMNAHRNASMTNLGLDKSLGSLSSGLRITKAADDASGMAI
ADSLRQQAQGLGQAVMNSNDGIGVTQTADGALDEYINIANTIRTKAIQAA
SDGQTSDTRKAIQADIDRLMQEAQNIASTTSFNGQTLLNGGYQNKSFHIG
AYSGETVKISIEDSRTEKVGKFSLAESTTGLTATTGQAGVSTVSLSVTVT
SADGTTSTSTGEAVLTSGAHSSYEIAQMVVDAFNSDAQTDGTNARASVYE
LTSSTAGTAAFGIRVDSSDNFTTTEAGFTIGDATAALTNNFSTIDVTTRE
KAEKAIIISDYTLKDLDSRRSDIGSVQNQLESTIRNISVTQVNVQAAESQ
IRDVDFAAESANFAKFNILAQSGSYAMSQANAVQQNVLKLLQ
>Tmden_1865 conserved hypothetical protein
MTQEELDALMSGDIDDLDSLGDEQSVSEQNDLEEDEEVDDDDLVFEEEET
KTVKEKPVGYTKKTAHHWPMPATEENKMVHQLDDVTKESEEKASEIFDII
EGVSNNLMDSEEVMNGVVEVINSNIALFKTLNKKFPDVEAFATQLEKNSA
ALDDANQIIESMQSGGDSIMSVMDIMQYQDIHRQKIERVINVMRALSNYM
NSLFEGRIDDEKRVSSAQHIVGDTHNELASNEDIEALLASFVKQ
>Tmden_1251 Pilus retraction protein PilT
MTQETNQQIDIKELLKSVLHFESSDLHLVAGSKPQIRIDKALKPLNLHVL
SAKEIEDMAYALIEDKQKKIFEDKNELDFSFELENIGRFRANYYRTIRGI
ACAFRTIPVDVPPLEKFNNNPIFKELIKRERGLILVTGPTGSGKSTTLAS
MLHEINLTENKHIITIEDPVEFVHTNINSIFSQREIGSNTSSFATALKFA
LRQDPDVILVGEMRDKETISAALTAAETGHIVFGTLHTNSAPSTINRIID
VFDAKEQAQVRAQLASSLISVISQSLIPRVSGGIIATQEILIANTAIQNL
IREDKVHQIYSQMQLNQNETHMTTQTDQLTTLLRKGIISKESAIKASNRP
EELIRIIHNL
>Tmden_1257 response regulator receiver (CheY-like) modulated CheW protein
MSVLDNVDAATNLAKNNEVQLLVFRVGDKPDSTYYAINVFKTREVVESKN
HYITQIPSSHWLLEGTIVLRGLQIPILNLPLWLGVTLTKEEIKRSNILVC
DFNGVVIGLRIMSAFRVIKKNWSQMHAPDSYRVGNDNVVINDTRLEDGSL
CLVLDYEKLLADVIPHAMVDVTESPVNLKSLTIPIKLKNGTVLIAEDSKT
AQKHLKQIFENANLSMKIFDNGKLLVDYVDSLEENASKIPAIITDIEMPE
MSGFTVVKLLKNNPLTRNIPIIVNSSMTGQNNKREAEVLGADGFVDKTKS
QNIIPLIVEIMSKDEA
>Tmden_0209 methyl-accepting chemotaxis sensory transducer
MSIKYKLNLITAIVVSFALIIIAIATLKAIDDKENISKSQSLNTLSQKLS
LLIHETQKERGASAGFIGSHGKQFGDILPNQRASTTKEYESLKVYIQSLD
LDFFPKELKDEISAFNEKMSQIEQIRSKVTELSIGSKEVVTYYTEMNSKI
LNITSLSAKLANSAELVKALSAYNNFLKSKERAGVERAVLSSTFAADKFS
DGAFAKWITLVAEQDAFLDSFLSMATQSSKDLYKQKINSPVIAEVNKMRE
IAKLRANEGSLGVDSVIWFSTITKKIDILKEIDDELAKQNTLLLEELKAA
SIQKATISIGSYLAFAIAIFIIIFIISRGVNRSVRSSLEKIDCVSSNLDL
TCDIIVEGNDEISRISKALNVMIIAFKESVYQAKDVSATTSSESKVLNSI
VEQLTKNGIVADKKITVINTLVTEVGQRLDAIEESSITVTEDLNITYSVL
DTFVNQLHLVVEAIEHGSNRQQELVQKVYSLTEQAKNIKDVLAIISDIAD
QTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEISANVNL
ITQNVIEISEETQVTSENMGNIANSAQELISSSEQTKENLSVTNAKSSDV
MYQSTYIATKTKELIHNMDEIIELSKKNTEHRNLVDEAATKLLSDANRLQ
NELSKFKI
>Tmden_1932 methyl-accepting chemotaxis sensory transducer
MKKMSIKMQVILLVIASLAVLALISTSIASSKSKEALLSENLSQLSKGRD
LKKGQIEDFFQSRVKDIEVLSRSKDLAELASSLIRVHNELEVKGEDDYPA
KNQMALAEIAPHETYFQAYMKDYGYSDIFVVCAKHGHVMYTGAKKSDNGA
NLTHGSLKDSSLGMAYKEALKNNRPTFIDMKPYAPSNNEPSMFLSTPVKV
NGEVKAVLIFQISNSAISKVMSYREEGSAATQDDYLVGADKLMRSDSFLR
KDTHSVKASFANPSTGSGDTQASRNALEGKTGNVTSTGFDGSSVIFSYSS
IQIGEDLKWAIISRIGEEEVIASANEIRNTLIIDSLLLLVVIIIISIYVI
NVSLVKPIERFKTSLLTIGDNKNLTIKVDENAPLELSQMAHSFNTLILTL
RDLIETSKQSASENASISHELSTTAMGVGESVEKSVSIIDDATKKANSIK
DEISQAIHDAQESKKGILQANENLDMARAEIVSLSKKVGESAQLEVELSD
RMQTLSHEANEVKNVLEIISDIADQTNLLALNAAIEAARAGEHGRGFAVV
ADEVRKLAERTQRSLTEINATINVIVQSIVDVSGQMSSNSEEVQALAQSA
SDVEDKINNSVAIVENAVRASDKTVSDFEKTGKNVEYIVSQVTQINEISS
KNARNVEEIAAAAEHLNSMTDELHGKLEEFRT
>Tmden_0365 Flagellar basal-body rod protein FlgB
MSIQVSATHALAAKALDYRAIRQDMISSNIANADTPFYRPRDVRFEDTLA
EQKAKILNLSIPKLSLAQTDSAHIPLKDEPDNSKAKTFFRDGHMARNDGN
SVDLDVETTEMSKNSIMFNALVGAMKKDSGIFKGVIDASSKLS
>Tmden_1531 response regulator receiver (CheY-like) modulated CheW protein
MNIDNSLKVGSNEMELVDFRIFKQEEDRVYEGIYGINVSKVREIIKLPKL
TELPGTPEFIEGIFDLRSIVIPVVNLAKWMKIKQPQAMEKNSRVIITEFN
NVLIGFIVHEAKRIRRISWSDIEPASFMSNSASIEGSKITGVTKIEGDNV
LLILDLESVVQDLGLYEPDTQFNNTEIESFSGLALVLDDSSTARKIVKEA
LVNMGFDVLEAIDGEEGLEKLDELYELYGDKISKNLKIIVSDVEMPRMDG
FHFAANVKEDARFSTIPIVFNSSISDHFSEDRGVEAGGEAYLVKFKASSF
YNEVARIVRAHMK
>Tmden_0564 hypothetical protein
MISQLNSAGVRTAYANSFGEAKEASQKGTLSVSKQGDTSKVEQIKDAIAS
GEYKINLQTLSQKIAQELL
>Tmden_1862 conserved hypothetical protein
MKWMRDEEYMELTGLDMSAIDDLAHRGKLTLKVEDGIRYIDPSKGAREVV
PAQLKELSSHNTKEMLVQPQFVEKTIGTIINLHEKVLDAKDETLRAVRVE
NEFLREALSSLQELYDEDRKTIHTLQEQLKLSQQEVEFMRRKYKLMWNKA
IEEHTEK
>Tmden_1035 CheC, inhibitor of MCP methylation
MNLQFNEDQLDALREFMNVSIGAATASMANLLNAFGTMHIPKIEVCNSDE
LAVKIQESIDIRSMYFVTKQLFTGKFGGECMFVISEDSSINLGRHLYSIE
NPSFDDINDAVIELTNILTSTIVSRLTQELNTQVQFFVPSLQFLDPSSIV
DEEDVAEYSKIIIISTILDFQDQQIIGNIYILTKDEAIESLKVLIDKKIE
EIYG
>Tmden_0030 Flagellar hook capping protein
MAITSTGLNAATHAESAAANAAKDKTALGKDDFMKLLLVELQHQDPTEPM
DSEKILSQTSQLATLEASENTNKALSELAASMSASQQFSTVSAIGKTADL
GSNAITLDKGTNTKFEMYFPDAISNGTVQILDVNGNTIKTLDVGTNPKGV
YGFTWDGTNANGGAVDSGIYYATASYTNPDGAALKTRVGAYPIESVRFDK
GETFLKLGSNYVPLANVKEVY
>Tmden_0043 methyl-accepting chemotaxis sensory transducer
MHDEIIKALKDAAAGKLSARITRIPNDNSKESAFAWSINDALDQFEAFMR
DVQTSIESAANGKTHRSTDPHGLHGIFRTTSQKLQLAISSISLGHETKIK
SKLSNDFSVLGGGVSGGLEIIQHDIAIAQNGSDEISKVSEKTALLSERSL
ENVKDISQKLATLVDSISSSHDVIINLGQRTRDISNVVGLIKDIADQTNL
LALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKATQEIEINISTLQQE
SNEMISSSENISEIATESNNVISEFEKTFEELNSYANKSSEISTAINNQL
FTSLVKVDHIIFKSNAYSTLLSSNTVNTFIGHKDCRMGKWYTGLGADKFG
HTKTFKEIDSVHANVHDYAIKNYEFVKAKTVLKGENPNIIIKNFTEMEKS
SDLLFKKLDEMVQEYTKSGAK
>Tmden_2085 ATPase FliI/YscN
MPLSLIKNKISNKKYSVAFGEVVKINATVITARGLSVSISDIVKIISNES
AQETIGMVTEIDGLIFFITPFSFVEGFRSGDRVFLDQTGLNIPVSSSLLG
RVVDPFMRPIDGKGSINDSKLSPIIKAPIAAMKRGMIDEIFSVGVKSIDG
LLTCGKGQKLGIFAGSGVGKSTLMGMIVRGANAPIKVVALIGERGREVPE
FIEKNLGGNLENTVIVVATSDDSPLMRKYGAFAAMSVAEFFKDQGLDVLF
IMDSVTRFAMAQREIGLALGEPPTSKGYPPSSLTLLPQLMERAGKEEGKG
SITAFFTVLIEGDDMGDPIADQSRSILDGHIVLSREMTDFGIYPPVHILN
SASRVMNDIITPEHLRAVQKFRRLYTLLKENEVLIRIGAYTKGSDSELDE
AMAKKSEMEKFLMQNSSTQSDFDETVETLLKLMNLS
>Tmden_1513 conserved hypothetical protein
MIKSNKISTKIKFIGALLIFLIASVIGTTIYLNHQNIKDALVINIAGKQR
MLTQKISKNIFYIHYQSSHDFSELDDACNEFVDGLNTLKFGNFDKQISPF
HTYEISIQISEVDKLWGQFYKNVQSFKLLKNAQIKDENSINSIVASIYKE
NSVLLKNVDKLVTLYTNHSEEKTNFIKNFQYTSAFILFVLFLYSLAQLKS
IESHVDSFMQYSKMLVGNEDISSLSPIKLEAESEVEIKEVSDTINCFISK
INSAVEYSNEALLQSQKASSKLEELTDEFDTILAEIKGNSSASTHLNNSE
DMVIESTEVLISSTKKLTNLKAELDKLIKSCQELK
>Tmden_0983 methyl-accepting chemotaxis sensory transducer
MLSSISIKLKMALIVIIPVFVILISLGMDSYRSYNEVAILSQIQEMVSFT
QKSSSLVHNLQKERGASAGFISSKGEVFSSELNSIRRDTDEKYDELKKFY
SSMNKETHSSALQDKMSKAMQSLLELQSIRESVSSLGVVVGIPVAYYTKV
NNSFISSIEEIAKISHNAQMNNMISSFVNFLASKERAGLERAVLSSTFSR
DNFADGFYEKFITLLSEQNTYMNKFLFSAPQDMIEFYTQTMSATEIQEVE
KMRKVALSKPNGGFDIDATYWFKTITSKINLLKSVEDKFSAQLESNVVAL
KRSASNYLMLSLLVNSLIVLFIVGFSFYVSNNLVSRIKRFKDEIDEIITT
KDFSKHLTQNGNDEISFIQESVNHLADVVNQSMQEAKLSLEDSQKHYMEN
EKQLEANRLTLGLTELLNRGAIDGASEVQSGILETMEALNQINKKNAQTE
EVVANVQESTHKMSSSLSNISQKMNSSKENADQLNSSVIEISNVIALIKD
ISDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQRATNEVELN
INLLKQNSSSMQEFSEQMNVEVSTSVEVLELFMSSLNSLVTSAQQIQHSN
KEVSNAMFINLAKLDHIVFKFTGYDAVFKDDRNFKFSEHTACRFGKWYIG
DAKEIFGKTTSYAKIDPIHKVVHDRVRSVPAYIEDGAVKNSTKIILAFSE
AENASKDLFKILNTMAHEIK
>Tmden_0703 GTP-binding signal recognition particle SRP54, G-domain
MILISVTVTNSNGWLGNFEKKLRIAELFCDKSQSSSNIYYCRVTFVLVND
SMLEPKELKEIKSEIAKLGDKVKIIQNMFWEEKAPDLDSHIPSEFAEIYR
LASQSGMNKEHLDAIMRMTLEHMPFKMRENSSTIKRYFQTILRKMVPVRL
EALPSIGNKKVIMLVGPTGVGKTTSVAKLAARYSFLMQKKYKVGLIVLDT
YRIGAVEQLMQYARMMKLAIETVVDPSDFASALDSLKYCDYILIDTMGSS
PYDRNKIEKIYECLDGNDTKYNIDVVLVMPSSIKYEDLKATYENFSSLNV
DTLMFTKLDETRGFGNIFSLAYEIKKPISYFSVGQEVPEDLVCATSDFLV
ECLLNGFNRSKA
>Tmden_1939 CheB methylesterase
MLENSQLERVILIGASTGGPGQIEKIIKALPKLKHTTIIIAQHMALDFIA
SFVKRLGEHSSNSIHIIENALRLRAGEIYICQGITTIHSTNVGLEFHLTC
SKEYKYNPDINALFSSFAPFVKSYKTLGIILTGIGDDGVSGCKELSLMGA
RTITQTQESAIVDGMPLRARQSIESIEIDDTNGIKNKIMEFCN
>Tmden_1555 putative CheA signal transduction histidine kinases
MKNCLIHYPSELISKFSKGNVSGAITGNILVPLIIVFSFNNIIPAAQLYI
WFALHVSVFLARIIFRKKISSHLYVYSSLISFSSVLYALFAWMSFTYGDD
IYLLLAGMIVASVAAASMISLVSIFHIFVLFVTIQMVGLIVVFLLNGQNI
FYLSVLLVVVFLFFILLNGYKQFSILKEEIKLKKQVHDLLDNAGQGFLSF
DENLKCQSSYSQECKRIFGIEDIEGLDISNLLFSGNSLNGEIFIDGISRA
CASEDEDIKEMFLSLLPKEEIIGDKSIKIEYKNLKKNRYMVILSDITNTK
GLTSKLENQYQIQKMIVAIASDKNDFIELKDDFEQFTNNISNVSNTNSLT
IIRDILRELHTFKGIFAQKEMLHITAYILEVEKKIRNLCAGEDIISTLIK
ADLHSVFEEDLTIIRSILGDGFLTSPKSINVDIDSIDDIESSLIALKKTL
SANEQKNLNNTLTKVQRLKHESLKHMLNPFVSHIKQLSSALEKEIYPLEI
KGDEKIKIDSKFKPFIKSLVHLFNNCADHGIEDIETRAMLNKDEVGTIKC
SFEIVSNMLIIQISDDGGGIDTKELSLTAINKALKTKEELELMSQEDKCK
LIFTDKLSTKEDISMVSGVGIGMGVIKENLEKLDAKYTIENIPQSGVTFT
FYIPLNINRDEDISNEKKIENICDNILTQIEVFLKNSLKLEIKSIKQITD
VSIDKSYAQIDLYDTFDGNVIMLFSDEIIEFMSSALIPKNFDKTDIAWMS
KELPSEVLNTIVGLSLQYFDKSLKDVKMTPPLYLDNTDLTKALKDAKNKF
IQEIETSSGKIVYIVFEKEKP
>Tmden_0473 Flagellar motor switch protein FliG
MTLNPTQQAKFDEMSMGQKVAILLMQMGEDATAAIFSNMSIDAITEVSKH
IATNKSVEKSVATAILEEFYAIFQSGQFITAGGLEYARELLYRTLGPEEA
KKILEKLSKSMQETQNFAYLSKIKPQQLSDFIINEHPQTIALIMAHMDAT
EAADTLHFFPDDLRSEVSMRMAKLGDISPSVIKRVSAVLESKLESLASYK
VEVGGPRAVADIFNRLGAKASKETLAKIEERDEEMSNQIKEMMFTFEDIA
KLDKNAITEILKAIDKPDLMLGLKSAPEDLKQKFFSAMSERAKEAFEEEM
QFMGAVKMKDVEGAQRRIVEIVNGLAEAGTIQLGTSSEEMVE
>Tmden_1529 CheW protein
MSDKLKQIIKKQNQKDTNQEHVDNVVQLVGFVIGDEEYAVPILSIQEIIK
PFPWTRVPQVPKYVVGVFNMRGAVIPLIDLRLKFGLSPKKHNEETRFIVM
RDGDDVAGFVIDRLTMAIRIKKSNIGPAPDTASGDNTVIDGVGKQEDRII
TILKVKKLLQRDF
>Tmden_0032 Flagellar hook FlgE
MLKSLFAGVSGLQSHQVAMDVESNNIANVNTVGYKYSRANFSDLLAQTRA
IATAPQGELGGKNPVQVGLGATVSSMTRIFSQGSVQNSDKNTDVAIQGDG
FFIISPDGGNTYKYTRAGDFKFDAGGNFVDNNGFIVQGWLRDRATGFVDA
TAPITNINIPPGLTTPASPTQHVVIKANLNSGPLVKTYSPAYEVKSYPTG
TPLPNPEAIDENGNPIDSGNMGVLFNDSGEAFNLQTGQGIWASFTPTKTA
ATAGVAAGAVELDITLELDDGTLKQITTNGGLAGNTAADNAARYVSAINA
QTSVTGIIATYSGGFINLANSNSDINASHNIRINAVGNANSGLVVGDSAT
TAYRYQYDPTGAVTVAGGDKKFTTIADLREALENQARAVGNLDADATPDE
NNIEIKINAQGKFELSNPGGSQDGDYDINLSITGMNANSITGGGITENTK
FTRNMEALNATLPAGSTGKAFSQSFNAATHSASIDIFDSLGSKHTLRTEF
RKVAVDASTGSSWNMKISVPEPATIDSVAPYNEKTGFVRFNSDGSLATFN
PPNVSFTANNGSAANQQVAIKLGTSNSFDGMTSFDSKSATSGISQDGFTG
GDLVGIRIDQSGTLIGSFSNGRSFGLAQIGMAKFTNNEGLSTEGGNVYVQ
TANSGDPIIGTAATAGRGFMQAAALEASNVDLSLALTQLIIIQRGYQANG
KTITTSDQLLQTLIGLKQ
>Tmden_0724 Flagellar biosynthesis protein FlhA
MAKKLTTREQIGTTLNFLIRQKDLSVVIFVMAILAIIIVPLPSGILDFLL
TISMALAVLILLISLYVPKPTDLTTFPTLILILTLFRLALNIATTRMILS
HGHQGVDEVSSIITSFGNFVVGGNYVIGIVVFSILVLINFMVITKGSTRV
AEVAARFTLDSMPGKQMAVDADLNAGLIDDAEAKKRRADILQDANFYGAM
DGSSKFVKGDAVAGIIITLINIIGGFLIGVFQHNMSVSDSASVFTLLTIG
DGLVGQIPALIISTATGIMITRSSGEGDNFAEGAINQMVGNAKIMMIVGG
IMILFALVPGLPTASMGFVGILFALLGWSIYKYERGELTILNVDKILSTK
EKEIQAKEKSALKPKKTNEEIAKEEEIALEDILKVEMLELTLGYQLIRLA
DSAQGGDLLERIRSMRRKIASDFGFLMPQVRIRDNLHLLPQQYQILLKGI
SIGEGKIIPDKFLAMDSGMATGEIKGEPTKEPAFGLDAMWIMPNQKEDAI
INGYTVVDPATVISTHMSELVKRNAEDLLTRQEVQSLITKIKNDFPVIID
DVQKVASIGLIQRVLKALLHEKIPLKDMLTILETIADIAEYTKNVEIITE
QVRAKLSRIITQMYSSDDGVIRLLTFDTASEQLLLEKSQERDGMRNLLLN
VSEINALIQATSAKAAEILQKGISPVVVIVDPQLRRGVAEIFERFSLDVV
TLSHAEIDSSATFEVMGSIAINK
>Tmden_0029 Flagellar hook-length control protein
MVLLDMKNANGSSSSSPLSLATLKEKPTISFSELLRGASETKDKKIVQNG
SLVLALVNEEKSIKMPKTSSKTSTLTSLLQTQDKVVEKKEKEPLELNPKL
VATLSSAEMKTLMSDAKNYLKSKILESEGFKKSEIKELPTTLKGLVEVAK
KFGVDISKITLEEVKEHGLDSSKTIKQDTKELHVDILKDKREVKAEAPEG
ALSEKKDSKTPESSKELLQDKKEPKTEVPKEIVQTPKESFADKKAQLQET
QKHPQTLQNSEAVSKIISNELRADEKQSEILKEIKSTPLFKAQNTLEHAT
TEQIVQAKVNSTSLKSEQKSPKDRADETLKLLLNGEKSSKDAPSLTADFS
VKSATVIAPSLSVESTKSLEKLLQGESFVSEQPSQAQKTDSLGASKADSF
EVKINEAKQMIRYLSDDIRNAINDYKSPFTRVKVQLNPQHLGEVDLTVVQ
RGKNLHVSISSNNTAINALSMNVNELKTQLVNSGINSATFNFNSSSQNGD
NSSGAFQQQRQNEQKAHAEYSHFESEEAHEEILSSLEIIVPRYI
>Tmden_0371 conserved hypothetical protein
MKHIFLVFIAVLQLFGGVVKSQIVGVNKEFSEASIKVEKIDVGVSGFVVH
EISKGKKTILANAIVKSFDPSSKIAKIEVSEFTSLSSSALPNGKWSIKVG
DEVVLAFGYTRGVLIAPSEEIYYRITKNSVLGWVHPDLFAVMLSYNGHPT
PLRSDFLQMSNDNSVGLVFIFLQNRVYTLDAKSFKILTITDAALEQEEVK
LPFYTRVEEINSPWWKWFDEGAKKLDEYEPHYYELIIEANRDNKELYEIV
KKGGEKLKDLLEEFEIKG
>Tmden_0566 Flagellar hook-associated protein
MGTSIFNSLSIGYSGLSAAQAGVSTTSHNITNAESEGYTRQRVVTAAATP
VNMAPGNVGNGTQIMDIARIFDNFVYDRYTGISAEKEYSDFTKQTLETLS
TYFPEIDGVGIKSDLQDYYNMWQTFADNPDNDAIKLSLAKQTEALSNGII
STQNKIYDLQSTLNTQLKVNVDEVNLLAKELSKINISIEVAEAGDTFTAN
DLRDKRNSIELSLAKLIGADSISGQINSNIIINSASNEKNGSYTLSVNGF
NIVDGGTYHPIHISSDKNSNGFYELSYERQDGVLIAMDEKIPGGRIGAIL
DLRGDKIEGNSSGTPSNGTLQKVLDELNAFATTLIESTNNLYASSATKSM
SSKNISINPTLPILDSNLNIRAGAFDIVIYDIDGNESARRVININNLTTM
NGVAGSNSIQGQIIDQKDDNADANANNDIDDFMQFHWATYQGGGNALELV
MDSSYGAKGYTFSIEDNLKTNQFDSGSNFAGALGLSRFFDGDSAKDIGLN
SALRDNPTNIKAGKTSSSGDNTLALNMIQQQFENYSFEVGKLKYESTIYG
MFDVVATEVGIRTKEAILNNQTITAQFNATELEYSSISKVSIDEELTNLI
KYQTSYGAASKIITTIDQMMQTLLGIKQ
>Tmden_0409 hypothetical protein
MSRAAFTMLELLFVILIMGLLANYGVELLSKAYKNFIFTSINNSLQANSA
MAVENIAARLQYRIKDSVIARGTDGTFQGLEANSDSTAPILEWVGYDAEG
FRGNTTPMPHWSGIIDIGLSTSTALVSPATDTAKVETLINTLSNGTSGVS
SAALYFIGSDSDIQTGYGWNGAISTQNKAMHPIRRDVAAPQNFIPINGAT
GADNNFTGVDVYEYYQLAWSAYAVGISDYNVITKTGTLMLYYNYQPWRGQ
TYLRDATAVMLMQNVSTFRFMAAGSVLKIEVCVKADLMEDYSLCKEKTLF
>Tmden_1103 Flagellar basal-body rod FlgG
MMQSLYTASTGMIGMQTQINTTANNIANVNTIGFKKSRAEFADLMYKVMD
YAGTSTSDVTKSPTGIEVGLGVRPTAINKVFSEGSLKQTDNELDVAVTGK
GFFKLELPDGSEVYSRNGAFKVDENGSIVNSDGYRLVPEVVIPPDATNIN
IGTDGTVSVVQAGQAQATQIGQMTLTNFINPAGLHSMGDNLYIETDSSGQ
PVEGTPGLDGLGVLRQGFVELSNVELVVELTDLITGQRAYDSNSKVITTS
DEMLQTTNNLKR
>Tmden_0978 response regulator receiver (CheY-like) modulated CheB methylesterase
MAIRVLIVDDSATARTVLKDVLSKDSEIEVIATAPDAYVARDKIVQLKPD
VICLDVEMPRMDGISFLKKIMKYFPTPVLMVSSLTQDGAQVTFDALEAGA
IDYVAKPHSNIYDGIDEIQKELIQKVKMVASSNLSARIEAAKAKTSTLEY
KPKATYSLAQTTNKLIAIGASTGGTVALAELIARFTKDTPGVVVVQHMPS
GFTNSFAQRLNSLCEVEVKEAEDGDIIGRGRVLVAPGDLHMVVRRDGGNY
RVKLGTGEKISGHRPSVDVLFNSVASHVGSNAIGVLLTGMGSDGAKGMLK
MKTSGASTIAQDEKSSIVWGMPKVAYEIGAVDFVEPLSNIDVKIASLLSE
RK
>Tmden_0139 hypothetical protein
MQEEEILGDTVEYLDEELQKAIAAVENIAARVYEGTLDAYEGFVQTEEYN
KKIVDIGNKLKEKGIDITKIAEYQ
>Tmden_0269 methyl-accepting chemotaxis sensory transducer
MTIGKRVTILVIGISFALLVSSFFVLNYFKAAIVQNVYSDMRSTLTAKIE
DRMNAKFDIGVTNAVAMANNSDIIASLKNNDRALAAKTLESIGDTYKEQT
DFKNIKIHIHDKDVKSFLRNWQVDKFGDDLSSFRHTINKVKESKKSMAAI
EVGRNGLTIRGLVPVIADNSYLGSLEFMQGFESVVKQFLKEKEYLLVLMD
NKLLNVADLSNTKNRISNYTLSQKTIDDKFLLEAKTIDMEAVLRDGYFVD
KNYFYTYTYIKDFENKPIGIYLLAKDRPSIEKAIDGASSIINSALLLVAS
LIFIITIAILVTIKKIVLNPLNVFQEGLLEFFKYLNKQSNKAELIAIDTN
DEIGKMAKIVNENILKTKENIELDQDLINDVKRVVMEVERGNLNQEVTKS
TQNQALFELKDSLNKMLYSLKNSVAKDINSLVAVLDSFKNSDFRATLEND
EAKVSQAINSIGQTIRDMLRDSNTNADELTRTSVSLIERMQTLAEGSYKQ
ASMLKDISKTMELANSSVVEVSQMTKAVVIKSTDIKSVVNVISEIADQTN
LLALNAAIEAARAGEHGRGFAVVADEVRKLAENTQRSLDDININIESLTQ
AVVDIGTTIEEQVKDINMATDSIKVIDKTTQEHAIHTKEIENIAIKLDEM
SKKTLQSISTKKF
>Tmden_1166 Surface presentation of antigens (SPOA) protein
MKKRRHTYGAKEEIFDSESELSWMDYSGLLDMEVEFISDLGETELSVGEI
LQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDS
SAVLYHLSKEK
>Tmden_1094 conserved hypothetical protein
MNISNNISSIQAHQSMLNNSAHNVANINTDGFIPTNTKINGGENYVKAEN
SKADNNGSKRSQTDLANEITNQIVSVDATSVNVTTVKTQDEMLGSLLDIK
A
>Tmden_0202 Flagellar hook-associated protein 2-like
MGSNISSLGIGSGVLTADVIDQLKEADTSRIVKPLENKITLNNQKQDAYK
LLDSLMKTFKASASALSYDTIFDSKSVKSSGKAEVKVDAGSTVESFSLET
VALAKKDITKFGSVATPASTIASGAGVLKINNFEIPYDGTTTLSALAQSI
TEIAGSSVSASVLQTGNGSYNLVLSSKSTGASQAISVSDTDDGTAGAGSL
NAALFDPYNAITNPNGYEKVQTASDATFKYNGIAMTRATNEVSDLILGVN
IKLKQEGDFSLVDISQDSTAISDELKLFTDSYNALIANLHDMTLKDEATG
AEGIFNGNSFVKSISRDLTRTITSLNTNNNSLINYGIDIDRSGKMSFNKA
TLETKLKEDPDAVKLFFTGGTNSEGNKVTGFFTTVDEKLKSYTGYGNLLS
NFETDLKNEGKSLSKNHAAAKASLDTRYEIMAKRFTAYDGMISRINSQFS
SLQMMIDAEANN
>Tmden_1496 methyl-accepting chemotaxis sensory transducer
MFKNLSIHKKMNYFIAMVTVSVFSAAISIFIAMGYVDSQYEHLHENSMIG
GLTTLKIEKNLNYVSRLSRDIMLGGDYEKNLANLEKTLHNIEDGFNSLEI
LMAKDDSLNMVKEAKTSTMLFLNNTLKMMKSLDAQDIKDNKTQIYANYSE
ELTPFANTSRDSFKKLVEFKSKELEDASSSLAKVLNVFKYLALVAGIAVG
LIVLILATIIRKSITSGINNFTSLISYVAKGDFSHKGSENDRNTELGIMG
HELSKLIEHTQNLIHEINTTITDASKGIFSHKISSDGMSGEFVDAIESVE
KSIEFMKTQHAKAQRDVFNSKISTKSVNVSESLSLIISDLSSNINDLKTI
TSATKEASESAMNSKNDILNITRELNALTEQVNTNNHSILEITNQANEIT
SVIQLITDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTHK
ATGEISVSIKSLQQDMNEIQTSSEMMKATVEDSTQKMNGFESALIELSNN
SLKMVDYSYGMENSIFIVLAKLEHILYKSRVYNSIVSLKKMFEQQDTHQC
ALGIWYDDEGKRRFAETSSFNKLSTPHEIVHKNANANLFYLDQRADEETL
KNSQNIINNFDNMEKASEELFALLDTMLQESK
>Tmden_1372 Flagellar protein FlaG protein
MDGIANVAKQQQTQMRSAQEQTHLQQTQVQQPKQVDLVKEMQKESTDAPK
KIDSKEQVQDLVNQLNKALAPMNTNIKFGVDQQDIFYVSVIESETSKMIR
RFPAEQAADFLPKMREVTGILFDSKG
>Tmden_0151 probable CDP-alcohol phosphatidyltransferase
MKSCPINYKKADQNIMRILAGLVTLIGLLFILSSQILLLIILLYDFLVRI
FDYKKISPLFHISSFFAKLAKLKKSEVDSGPKEFASKLGFLFVASAAIIF
FLGYPLVAIVIMFLLVCCAFLEAAFGYCVGCQIYILLKKFVP
>Tmden_0364 Flagellar basal-body rod protein FlgC
MSNFLNSFDISGYGLSAQRVRVNTISQNIANAQTTRTDEGGPYRRKEVVF
KAIDFNQEFNKALNGMTESAKYEDPLDEGDFGKRVNPAIMSVVVDKISRD
DKEPQKKYDPAHPDADANGYVAYPNINPVIEMADLVEATRSYQANVAAFE
SSKSIANSAISLLQ
>Tmden_1153 Flagellar basal body-associated protein FliL
MKHTKRDVLKNIVVTVILIIIVLLLILGVQSSDFSKIKKYDFGKSSNGFL
QQVSSSKSDSMEVSIVNKSEVNLGDFVFNVLGDKKLIANISIIHKPKNGK
TFMDNSGDEFIEKGAILRDATINAMLDSQNFDMSVNNNKIKDAIKNRLNK
NLQNSSVEEVYFNKFIIQ
>Tmden_1675 conserved hypothetical protein
MTASDIQNFSNGRTKARAYFCYLFSKNIQNRMPSLTQEMAMIGLLKTKED
LEKCEGVYLLDDRGVQVSPTFTLTKRVDEDVGRIRAERAYYYRAVKEGRC
TITDPYPSLITGDLTVTISQPIYDDKGELKYVACLDMPLEEVVKISRSTM
LDKFFLSLFRYSYAAFAFALISVALLLFIKGAQSFFLYEISPEHFQIKDV
FEATILLTLALAIFDLAKTLIEEEILGRSKDSSISGPHKTMVRFLGSIII
ALSIEALMLVFKFAITDPEKILYAMYIILGVSMLLITLAFYIKFTKLKIE
E
>Tmden_1104 Flagellar basal body rod protein
MQSGYYSSAAGMVTQFNRLDTIANNLANVNTVGFKEDNLIVGDFMRLYKE
ARDELPNANHTKEAAQFLNRAMNKAPQVVDAYTDFSLGVMQKSNNSLDMA
LSKEGLFFLVKTPEGIRLTRDGTFTKDDEGKLVTKQGYEVLPSDYFISKQ
PIIFNQGDSAIEIDKNGQILTNIPNSMTLNQLNRLFIAQPDNIDFLKKEG
DGLYRYDGAGGVEGLVSFDGSEAVLQGFIEKSNVNAVKMMTQLIETNRLV
GMYQKAMDTQMNDMNRDAIEKLAKKS
>Tmden_0975 MCP methyltransferase, CheR-type
MNVAAYEITKSEFKELSEFVYKEVGIHLAEHKIMLVRSRLSKRLRELNLR
SFKEYLAYLNEDGSGEETIMLINEISTNVTSFFREQSQWDFLEQEVKVFE
AAKKRTLRIYSAACSSGQEPYTIAMFLLSTLKNPQDWDIKILATDISENI
LLKAMEGCYSAQDIGALPKSMLLKFFDKKNIMTKQGNELFYEIKPFVKSM
ITFRSFNLVYGNYSKIPQSFDMIFCRNVMIYFDKETKEGVVKNLSSKILK
GGYFFIGHSESLVTMKDGVLKLEKPSIYKKQ
>Tmden_0840 Flagellar basal body-associated protein FliL
MPNKETTEETVTEGKKSKNLLMIIIIVVLLLIIIGGAAIAFLLMGGDEKE
QVAQQNIEQSAEKTQQKSASTRSREDSDDTDNRKFSQIGILYPLDTFTVN
LKSDAGRRYLKTTISLELNGKELSMELDSKAPVIRDRIIRILTSKTLEEI
SSKKGKQKISEQIMDTLNSMISDGSIKGIYFTEFVIQ