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# Chlamydophila pneumoniae TW-183, TW-183

>CpB0729 outer membrane secretion protein Q
MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSAN
VKHNLRDEKLAACPKNSAASLSAKKSHTKKTTPGSIPSKVFSKFDATQDK
TFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEE
PVPAASKEQLDSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDV
QPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSEEEKVKERLTK
RELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTI
VSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPHLSKLSTVVTD
SSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI
ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGT
LAEDDAFQMFIQPGTNKIFVVSSPRLANKAEQLLKSLDVPEMAHTLDDPA
STALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMD
EDFINTLNSIQWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVL
ILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATPTKATVPPGT
PNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLL
SALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQ
NIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA
ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQ
KRNIMMFIKPKVISSFEEGTRVTNKEGYRYNWEADEGSMQVAPRHAPECQ
GPPSLQAESDFKIIEIEAQ
>CpB0779 hypothetical protein
MFRCILFGIFLLTCFSSGGVLYYLFCSHDFSIGPKEKSRSVWIEEEKEFT
DSVLHHLPSQHQHLHILCFQGFLLQKQQKFSQAEKIFSKVYDEAQDGPFL
FKEEILGSRLINSFFLEKTDVMETILCLLNQRCPNSPYYHLFKALVCYKQ
KLYREVIEQLAYWQEEKTRALAPLLNISIEQLLTDFLLDYISAHSLIEQK
MFPEGRVILNRNINRLLKHECEWNAKTYDRIAILLSRSYFLELVESKSAD
IYFDYYEMVLFYLKKIYILEQCPYAELLPEEELVSLIMEHVFILPKDKLY
PLIQLLEMWQKHYVHPNSSLVVQILVDRFSTHMEGAIRFCEALVSFSGLE
ELHQQIITTFEELLSNKVQQIKTEEAKQCVALLHILDPSISISEKLALSS
DTLQNIVSGDDEQHTKLRNYLDLWEAIQSYDIDRQQLVHHLVYGAKDLWK
KGGNDEKALNLLQLVLRFTSYDIECESVVFLFIKQAYKQALSSHAIARLL
KLEKFISEANIPSIVISEAEKANFLADAEYLFAHEDYDKCYLYSMWLTKV
APSPQSYRLAGLCLMENKRYDEALEFLCMLSPNDSINDYKTQKALAFCQK
HQSKDRAAS
>CpB0332 YopU
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFK
HLGGFLVSMLSQAPTRHDPVITLFYLKNCLMLILTASLPLLGAVAVVGVI
VGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGA
ALILYITLKSKVSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAI
LDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDS
SSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAE
KYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLNAQNPN
NKNTNQPDHL
>CpB0463 outer membrane protein 11
MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKST
ADANGTNYVLSGNVYINDAGKGTALTGCCFTETTGDLTFTGKGYSFSFNT
VDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGAL
NLTDNGTILFSQNVSNEANNNGGAITAKTLSISGNTSSITFTSNSAKKLG
GAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSITQNSSLFFSG
NTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHG
LDLSAAGPTLFSNNRCGNTAAGKGGAIAIADSGSLSLSANQGDITFLGNT
LTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL
TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTL
ALKGNVELDVNGFTQTEGSTLLMQPGTKLKADTEAISLTKLVVDLSALEG
NKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAA
TAASDIYIDALLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTG
YNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQRGLWASGTAN
FFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFI
VENTSHNYLASLYLQHRAFLGGLPMPSFGSITDMLKDIPLILNAQLSYSY
TKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL
KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFE
ISLAYIGDVYRKNPRSRTSLMVSGASWTSLCKNLARQAFLASAGSHLTLS
PHVELSGEAAYELRGSAHIYNVDCGLRYSF
>CpB0069 F25H5.5
MIKKFFIYSLIFSCSFSAPLKGICNEDVSSQSRIEEDPEVLITQLNELIE
TPIEEGKEIRNELQAISDGQKSSEEIEESCGTSDSEGLSEKTDKESSNEY
VLDFFDSMVQRLEGISKMCQSGQVAQIIDCFNREFDIRNRELELKNRELE
LREKDLEFKKSILDWNKEKVSRELAFQREQDIKQTLMLLKK
>CpB0844 general secretion pathway protein D precursor
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMAS
FNANMREYSLQLSKLYEEARKLRASGTEDEALWKDLIRRIGEVRGYLREI
EELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGA
IKIATLSKFVVPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCS
VAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKFINPETTHVDV
IAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISIL
NAAFREDLTKDVSEESLGLRVVPLQYQGRSLFLSGTAALVQQALTLIREL
EEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQ
MLLKKLDVPKKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSV
SWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMN
QTPARIAVVDEMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSY
ITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVIIGGLRCKQMS
DSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERK
EEALLSSRPGEREEYYQALAASEAAARAAHKKLEMFPASGVSLSQVERQE
YDGC
>CpB1057 hypothetical protein
MLRATSELCFGILTQSECALTQALPPKEKPLQEEQFLVKNGILMRSTSLP
NLKPGQSQQTSLASHRNPLAQQSTSSNSTGKASTETTSSSFPFFSCKAPE
GDSSVDKTFTVSVQTPKAQEQQEASASQSQAQFHVRSYSSSTIKEHSAKE
KVSQSTKSAETQKHTQTKSDATLSPMSLYSTLHKEVPQALSSTKSQQKDE
EHRDQRQQEGYEQEQEQEEGKKKTPWCTVESLQQTSSSNQVYESYTPIIP
DPIVEFALSESQLSVLAGKRVTNLDVLRICTELMKLMLKSRANDTMTRLE
ERELMEREAHELAASYSRQAKYARWLGIATATLGILGAIAPMVGEISGDS
ILGFVQRISGRFKDATAKTFFKGIGKVFTSLSQLTEAASKVHELSESAVR
AVAEYRKEVFRMRQDEVTRTIEEVKDNWKSMDNFLLNILQTEHDAARSLY
Q
>CpB1043 hypothetical protein
MWIIDPLSAKKPLQAAINVPGTPITGGPNTATADDIIAKFSKDSNPLIVT
VYYVYQSVLVAQDNLSIIAQELQANSSAQTYLNNQEALYQYVSIPKNKLN
DNSSSYLQNIQSDNQAIGASRQAIQNQISSLGNAAQVISSNLNTNNNIIQ
QSLQVGQALIQTFSQIVSLIANI
>CpB0485 outer membrane protein 5
MSKTPPKFLFYLGNFTACMFGMTPAVYSLQTDSLEKFALERDEEFRTSFP
LLDSLSTLTGFSPITTFVGNRHNSSQDIVLSNYKSIDNILLLWTSAGGAV
SCNNFLLSNVEDHAFFSKNLAIGTGGAIACQGACTITKNRGPLIFFSNRG
LNNASTGGETRGGAIACNGDFTISQNQGTFYFVNNSVNNWGGALSTNGHC
RIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAI
QTSVTVAIKNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGT
ILFNNNYCIRDGGAICTQFLTIKNSGHVYFTNNQGNWGGALMLLQDSTCL
LFAEQGNIAFQNNEVFLTTFGRYNAIHCTPNSNLQLGANKGYTTAFFDPI
EHQHPTTNPLIFNPNANHQGTILFSSAYIPEASDYENNFISSSKNTSELR
NGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQVI
INNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNE
ENRDPYDSIDLSEPLQNIHLLSLSDVTARHINTDNFHPESLNATEHYGYQ
GIWSPYWVETITTTNNASIETANTLYRALYANWTPLGYKVNPEYQGDLAT
TPLWQSFHTMFSLLRSYNRTGDSDIERPFLEIQGIADGLFVHQNSIPGAP
GFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIGSSNNVSAHNTVS
SLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAA
AIGCSFPWQQKSYLHLSPFVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYN
LTLPLGIQGKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGSWD
ILGHNYVRNALGYKVHNQTALFRSLDLFLDYQGSVSSSTSTHHLQAGSTL
KF
>CpB0424 hypothetical protein
MFFNLFSLVFKLSDELALAETIQEPISVHEMFPGSMKLEMFKMLGSLILL
LTIFGFGVWAFKKFVRSRSHGFGGSSQIKILERRSLTPKTSIYLIRVVNK
TLVIAETPEKITLLTEFPPDTDINHLLQENNKQSSSSATSDFLSKAIQKI
QKKQQTNQD
>CpB0373 flagellar secretion protein
MSGKKDGVRGMIFVPLSILVLIFLPLPQILLDFGLCISFALSLLTVCWVF
TLNSSNSAKLFPPFFLYLCLLRLGLNLASTRWIVSSGTASSLIVSLGSFF
SLGSLWAATFACLLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALD
SDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGDAIISCILLLV
NVVSVTCLYYTSGYALEQMWFTVLGDALVSQVPALLTSCAAATLISKIDK
EESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLLWLA
YRKEEPASEDSCIERAFSYVEGACPKEQESQFYQVYRAASEEVFEDLGVR
LPVLTSLRIEERPWLRVFGQNVYLDEMTPEAVLPFLRNIAHEALNAEVVQ
KYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEA
VAVYQNSGDSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELI
NSSYSKSNPVMQENVIRRVDSLLERSVFKDFRAIVTSCETRFEMKKMLDP
HFPDLLVLSHDELPKEIPISFLGIVSDEVLVP
>CpB0847 general secretion pathway protein g precursor
MKRQKRKQSITLIEMMVVITLIGIIGGALAFNMRGSIHKGKVFQSEQNCA
KVYDILMMEYATGGSSLKEIIAHKETVVEEASWCKEGRKLLKDAWGEDLI
VQLNDKGDDLVIFSKRVQSSNKK
>CpB1042 hypothetical protein
MSIQPVSNTTTKADKVIPDSTKVISDSITINKQSAFYFCISVMLRLSEST
TEYGKSILAVLEDNTIVQQQRVKELINLPLLKVPDLQKKDGSDDEYKNQN
EIQAYQSSNQQISANRQMIQQELSSAQQRAQANQKSVNSTTIESMQILQA
TSSMLSTLKELTIKANLTNSPSD
>CpB0855 translocation protein L
MKFFSLIFKDDDVSPNKKVLSPEAFSAFLDAKELLEKTKADSEAYVAETE
QKCAQIRQEAKDQGFKEGSESWSKQIAFLEEETKNLRIRVREALVPLAIA
SVRKIIGKELELHPETIVSIISQALKELTQNKHIIISVNPKDLPLVEKSR
PELKNIVEYADSLILTAKPDVTPGGCIIETEAGIINAQLDVQLDALEKAF
STILKAKNPVDEPSETSSSTDSSSLSNDQDKKE
>CpB0846 XcpS
MPRYRYTYLDPKERRKRGYLEALHIQEAREKLAQENIQVLDIREVALRRM
SIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHEQKMGLLLTSFMET
LRSGGSLSQAMAAHPNIFDHFYCSGVAAGESVGNLEGCLQNIIVVLEERA
QITKKMVGALSYPCVLLVFSFAVMLFFLLGVIPSLKETFENMEVKGLTKI
VFGVSDCLSAYRYLFLGFASALITVGILMRHRIPWKKILEKLLFALPGTK
KFVVKVAVNRFCSVASAILKGGGTLIEGLDLGCDAIPYDRLKTDMRDIVQ
AVIGGGSLSQELAQRSWVPKLAIGMIALGEESGDLADVLGYVAHIYNEDT
QKTLASITSWCQPVILIFLGGLIGVIMLAILIPLTSNIQTL
>CpB0889 flagellar motor switch protein
MFFQNLAKKLTALGISPLGCLLIGGVVSCAILFGRSSNPSLAPTQVKTEK
TSGNWLKLTQMGNPKLIESLTKKEQLEKDLTSFHPIASAKVAIALSTEDD
VMSPLHLSVILTLRKEESLTPSLLFSITDYLCSSLPGLKREHISLSDNLG
NLYIPESITVNSLFIHTLENYLGKIFPKEHFALAYHAKAEKPTLQLTLNE
NYIAHLTKEESEKIVAHTKHYLYQNYDDSYDIVIETLPFARLQNKKSFPA
KVLIGSMILVISLMIVALASFYLARHAYERVSPEPRKIKRGINISKLLEI
IQKESPEKIALILSYLDPKKAEALLNRLPEDLKHQVLKYKL
>CpB0887 H+-transporting ATP synthase alpha chain
MNHLNKEKLHIHNWQPYRACGLLSKVSGNLIEVDGLSACLGELCKISSTK
DPNLLAEVIGFHNHTTLLMSLSPLHSVALGTEVLPLRRPPSLHLSDHLLG
RVLDAFGNPIDKKEDLPKTHRKPLLSLPPSPMMRQPIDQIFPTGIKAIDA
FLTLGKGQRIGVFSEPGSGKSSLLSAIALGSKSTINVIALIGERGREVRE
YIEKHSNALKQQRTIIIAAPAHETAPTKVIAGRAAMTIAEYFREQGHEVL
FIMDSLSRWIAALQEVALARGETLSAHQYAASVFHHVSEFTERAGNNDKG
SITALYAILYYPKHPDIFTDYLKSLLDGHFFLTSQGKALASPPIDILSSL
SRSAQALALPHHYAAAERLRSLLKVYNEALDIIHLGAYTPGQDEELDKAV
KLLPSIKAFLAQPLSSYCYLDNTLKQLEALADS
>CpB0888 hypothetical protein
MTTPQSPGSLSQSHLPHPHDPWDTEPTSLPEDPNDKASQELHSLVHLFRK
LSIHLLSEVEKTVQQLKPDLLELALLICEKFLYKKLENPQELALLLSTAL
QRHTTLRSLTPIKVFLHPEDLKTLTDWISTHELPMIKHAEFFPDTSCRRS
GFKIETPNGILRQEISEELDHLLSVLTA
>CpB1109 hypothetical protein
MSLNKEIGMTVLFYAFLFIFLFLCVILCGLILVQESKSMGLGSSFGVDSG
DSVFGVSTPDILKKVTSWCAVAFCIGCLLLSFSTNLLGKKLDAKEFLLPA
AEESDTQASSESVEADES
>CpB0731 fliN, flagellar motor switch protein
MAVAADSSASWLKSRNNFLSSLGKTEEQVAAPEFPKELCQHKIREKFRLE
DVQVSIKFRGSITAVEATKEFGVHLLIQPMVVQPWEVENLLFLTSEEDLQ
ELMVAVFDDASLASYFYEKDKLLGFHYYFVAEACKLFEELQWVPSLSAKV
GGDAIFTATSLQGSFQVVDISLRLDGKNVRCRLLLPEDTFQSCQKFFSGL
HDESDLHNIDQTQQISLSVEVGYSQLTQEEWHQVVPGSFIMLDSCLYDPE
TEESGALLTVQKHQFFGGRFLTPSSGEFKITSYPNLTHEDPPLPENPQAS
AAPLPGYSRLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGA
KVGRGEIIALGDVLGIRVLEV
>CpB0845 xcpR, XcpR
MAASILSQELLDILPYTFLKKHCLLPIEESSEAITIAHATATSVIAQDEV
KLLIKKPVRFVLKEESEILQRLQQLYSNREGNVSDMLLTMKEEDGTTISE
EEDLLETTDTIPVVRLLNWILKEAIEERASDIHFEPCEDSMRIRYRIDGV
LHDRHSPPSHLRSALTTRLKVLAKMDIAEHRLPQDGRIKIHIGGQEVDMR
VSTVPVIYGERVVLRILDKRNVILDIAGLHMPKGTEILFKDTITAPEGIL
LVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPEYKLPGIAQIAVKPK
IGLTFARGLRHLLRQDPDILMVGEIRDQETAEIAIQAALTGHLVVSTLHT
NDAISAIPRLLDMGIESYLLSATLVGVVAQRLVRTICPYCKVAYTPENQE
KSFLASLGKDTEMPLYRGQGCVHCFRSGYKGRQGIYEFLRPNTLFRSEVA
SNRPYHILRETAEQNGFLPILEHGIALAVSGETTLAEVLRVTKRCD
>CpB0734 yopN, YopN
MDQLTTDFDTLMSQLGDVNLTTVVGRITEVVGMLIKAVVPNVRVGEVCLV
KRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPSSEVIPTGLPLHIRAGN
GLLGRVLNGLGEPIDVETKGPLQNVDQTFPIFRAPPDPLHRAKLRQILST
GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG
ERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLE
RSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRR
GSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>CpB0854 yscR, YscR
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQ
QPVAASSVPSYMPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLAL
SPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFP
TGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNT
PKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVL
IYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQG
LMISFK