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2024-04-30 08:52:05

Gene list

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COG category: Cell motility
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 125

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0082 putative secreted proteinchromosome CDS94771 291 - 0.463918
STM0282 putative outer membrane protein, OmpA familychromosome CDS321111 1305 + 0.59387
STM0307 homology to Shigella VirG proteinchromosome CDS350943 408 - 0.470588
STM0350 homology to outer membrane efflux proteinchromosome CDS392419 1512 - 0.587302
STM0916 putative Fels-1 prophage major tail proteinchromosome CDS987126 744 + 0.568548
STM1019 Gifsy-2 prophage proteinchromosome CDS1109305 234 + 0.461538
STM1038 Gifsy-2 prophage probable major tail proteinchromosome CDS1124410 750 + 0.508
STM1657 putative methyl-accepting chemotaxis proteinchromosome CDS1751277 1155 - 0.489177
STM2314 putative chemotaxis signal transduction proteinchromosome CDS2420643 1002 + 0.520958
STM2597 Gifsy-1 prophage proteinchromosome CDS2747033 747 - 0.56091
STM2621 Gifsy-1 prophage proteinchromosome CDS2765549 234 - 0.461538
STM2714 Fels-2 prophage proteinchromosome CDS2859028 429 - 0.608392
STM2721 Fels-2 prophage proteinchromosome CDS2863059 834 - 0.582734
STM2742 putative cytoplasmic proteinchromosome CDS2880444 1194 + 0.416248
STM3138 putative methyl-accepting chemotaxis proteinchromosome CDS3300619 1059 - 0.430595
STM3152 putative methyl-accepting chemotaxis proteinchromosome CDS3314324 1644 - 0.571776
STM3216 putative methyl-accepting chemotaxis proteinchromosome CDS3380802 1566 - 0.505109
STM4595 putative fimbrial chaparone proteinchromosome CDS4852849 546 - 0.501832
bcfA fimbrial subunitchromosome CDS24469 543 + 0.517495
bcfB fimbrial chaparonechromosome CDS25112 687 + 0.509461
bcfC fimbrial usherchromosome CDS25803 2622 + 0.544622
bcfD fimbrial subunitchromosome CDS28425 1008 + 0.500992
bcfE fimbrial subunitchromosome CDS29433 546 + 0.494505
bcfF fimbrial subunitchromosome CDS29994 519 + 0.55684
bcfG fimbrial chaparonechromosome CDS30478 732 + 0.539617
cheA sensory histitine protein kinasechromosome CDS2017178 2016 - 0.553075
cheB methyl esterasechromosome CDS2012690 1050 - 0.558095
cheM methyl accepting chemotaxis protein IIchromosome CDS2014756 1662 - 0.555355
cheR glutamate methyltransferasechromosome CDS2013736 867 - 0.527105
cheW purine-binding chemotaxis proteinchromosome CDS2016654 504 - 0.531746
cheZ chemotactic response proteinchromosome CDS2011628 645 - 0.573643
cpxP periplasmic repressor of cpx regulon by interaction with CpxAchromosome CDS4270595 501 + 0.506986
csgA curlin major subunitchromosome CDS1231630 456 + 0.515351
fimA major type 1 subunit fimbrin (pilin)chromosome CDS604115 558 + 0.541219
fimC periplasmic chaperone, required for type 1 fimbriaechromosome CDS605325 693 + 0.503608
fimD outer membrane usher proteinchromosome CDS606048 2613 + 0.556831
fimF putative fimbrial proteinchromosome CDS609692 519 + 0.55106
fimH minor fimbrial subunitchromosome CDS608675 1008 + 0.516865
fimI fimbrial protein internal segmentchromosome CDS604748 534 + 0.541198
flgA flagellar biosynthesis proteinchromosome CDS1257431 660 - 0.580303
flgB flagellar biosynthesis proteinchromosome CDS1258247 417 + 0.522782
flgC flagellar biosynthesis proteinchromosome CDS1258667 405 + 0.548148
flgD flagellar biosynthesis proteinchromosome CDS1259083 699 + 0.545064
flgE hook proteinchromosome CDS1259808 1212 + 0.55363
flgF flagellar biosynthesis proteinchromosome CDS1261040 756 + 0.607143
flgG flagellar biosynthesis proteinchromosome CDS1261809 783 + 0.564496
flgH flagellar biosynthesis proteinchromosome CDS1262646 699 + 0.543634
flgI putative flagella basal body proteinchromosome CDS1263356 1098 + 0.576503
flgJ flagellar biosynthesis proteinchromosome CDS1264453 951 + 0.562566
flgK hook-filament junction protein 1chromosome CDS1265468 1662 + 0.518051
flgL hook-filament junction proteinchromosome CDS1267144 954 + 0.536688
flgM anti-FliA factorchromosome CDS1257046 294 - 0.517007
flgN flagellar biosynthesis proteinchromosome CDS1256619 423 - 0.536643
flhA flagellar biosynthesis proteinchromosome CDS2008212 2079 - 0.559885
flhB putative part of export apparatus for flagellar proteinschromosome CDS2010283 1152 - 0.559028
fliC flagellar biosynthesis; flagellinchromosome CDS2047658 1488 - 0.491935
fliD filament capping proteinchromosome CDS2049402 1404 + 0.49359
fliE putative flagellar hook-basal body proteinchromosome CDS2056008 315 - 0.568254
fliF basal-body MS (membrane and supramembrane)-ring and collar proteinchromosome CDS2056539 1683 + 0.571598
fliG flagellar biosynthesis proteinchromosome CDS2058214 996 + 0.553213
fliH flagellar biosynthesis proteinchromosome CDS2059202 708 + 0.60452
fliI flagellum-specific ATP synthasechromosome CDS2059909 1371 + 0.60248
fliJ flagellar FliJ proteinchromosome CDS2061301 444 + 0.513514
fliK flagellar hook-length control proteinchromosome CDS2061741 1218 + 0.614943
fliL flagellar biosynthesischromosome CDS2063063 468 + 0.547009
fliM flagellar biosynthesis proteinchromosome CDS2063535 1005 + 0.534328
fliN flagellar biosynthesis proteinchromosome CDS2064536 414 + 0.548309
fliO flagellar biosynthesis proteinchromosome CDS2064949 378 + 0.60582
fliP flagellar biosynthesis proteinchromosome CDS2065326 738 + 0.536585
fliQ flagellar biosynthesis proteinchromosome CDS2066073 270 + 0.518519
fliR putative flagellar biosynthetic proteinchromosome CDS2066351 795 + 0.515723
fliS repressor of class 3a and 3b operons (RflA activity)chromosome CDS2050820 408 + 0.5
fljB filament structural proteinchromosome CDS2913230 1521 - 0.506903
hofB putative integral membrane proteinchromosome CDS166319 1386 - 0.554834
hofC putative component in type IV pilin biogenesischromosome CDS165127 1203 - 0.544472
hopD leader peptidase HopDchromosome CDS3596910 468 + 0.529915
invC surface presentation of antigenschromosome CDS3036677 1296 - 0.542438
invG outer membrane invasion proteinchromosome CDS3041597 1689 - 0.46418
lpfA long polar fimbriachromosome CDS3827449 537 - 0.463687
lpfB long polar fimbrial chaperonechromosome CDS3826666 699 - 0.447783
lpfC long polar fimbrial outer membrane usher proteinchromosome CDS3824115 2529 - 0.553578
lpfE long polar fimbrial minor proteinchromosome CDS3822485 528 - 0.511364
motA proton conductor component of motorchromosome CDS2020124 888 - 0.512387
motB enables flagellar motor rotationchromosome CDS2019198 930 - 0.545161
orgA putative flagellar biosynthesis/type III secretory pathway proteinchromosome CDS3013788 681 - 0.450808
ppdA prepilin peptidase dependent protein Achromosome CDS3157362 471 - 0.56051
ppdD prelipin peptidase dependent proteinchromosome CDS167714 438 - 0.53653
safB putative fimbriae assembly chaparonechromosome CDS342829 714 + 0.488796
safC putative fimbriae usherchromosome CDS343566 2511 + 0.546794
sipB cell invasion proteinchromosome CDS3029114 1782 - 0.523008
spaO surface presentation of antigenschromosome CDS3034335 912 - 0.527412
spaS surface presentation of antigenschromosome CDS3031533 1071 - 0.43324
spy periplasmic protein related to spheroblast formationchromosome CDS1388557 486 + 0.5
ssaC secretion system apparatus proteinchromosome CDS1480402 1494 + 0.423025
ssaN secretion system apparatus proteinchromosome CDS1495691 1302 + 0.512289
ssaQ secretion system apparatus proteinchromosome CDS1497708 969 + 0.46646
sseB secretion system effectorchromosome CDS1483934 591 + 0.433164
stbA putative fimbriae; major subunitchromosome CDS384403 537 - 0.471136
stbB putative fimbriae; chaparonechromosome CDS383580 762 - 0.454068
stbC putative fimbriae; usherchromosome CDS381035 2562 - 0.539422
stbE putative fimbriae; chaparonechromosome CDS378981 759 - 0.476943
stcB putative periplasmic chaperone proteinchromosome CDS2246358 684 - 0.402047
stcC putative outer membrane proteinchromosome CDS2243855 2490 - 0.457831
stdA putative fimbrial-like proteinchromosome CDS3191120 711 - 0.489451
stdB putative outer membrane usher proteinchromosome CDS3188511 2490 - 0.607229
stdC putative fimbrial chaparone proteinchromosome CDS3187727 744 - 0.58871
stfA putative fimbrial subunitchromosome CDS230657 561 + 0.520499
stfC putative fimbrial outer membrane usherchromosome CDS231303 2658 + 0.549661
stfD putative periplasmic fimbrial chaperonechromosome CDS233978 753 + 0.541833
sthA putative fimbrial chaparone proteinchromosome CDS4852095 684 - 0.461988
sthB putative fimbrial usher proteinchromosome CDS4849512 2538 - 0.472025
sthD putative fimbrial subunitchromosome CDS4848937 558 - 0.505376
sthE putative major fimbrial subunitchromosome CDS4847811 1086 - 0.524862
stiA putative fimbrial subunitchromosome CDS208383 540 - 0.524074
stiB putative fimbrial chaparonechromosome CDS207652 684 - 0.530702
stiC putativie fimbrial usherchromosome CDS205079 2547 - 0.553592
stjB putative fimbrial usher proteinchromosome CDS4826467 2409 - 0.493566
stjC putative fimbrial chaparone proteinchromosome CDS4828889 708 - 0.456215
tcp methyl-accepting transmembrane citrate/phenol chemoreceptorchromosome CDS3744842 1644 + 0.556569
trg methyl-accepting chemotaxis protein IIIchromosome CDS1715879 1626 - 0.541205
tsr methyl-accepting chemotaxis protein Ichromosome CDS4790082 1662 + 0.551745
yaiU flagellar protein; similar to 3rd module of ATP-binding components of transporterschromosome CDS425165 2937 + 0.462377
yggR putative protein transportchromosome CDS3259946 981 - 0.572885
yifL putative outer membrane lipoproteinchromosome CDS4152022 204 + 0.534314
yrfC putative inner membrane proteinchromosome CDS3645214 540 - 0.592593