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# Chlamydophila abortus S26/3, S26/3

>CAB041 putative general secretion protein
MKIVTSNIGRKILQVINKKKGKIGVLSILLFFDLVLLGVNSQKPATDEPR
SRVKNSQTDEKSQIAACPKNIVNKTSAKKSDKQAVVKNFPSNQPRHFKKS
TQTFSPGFSEGSPFAKPEAKKRLQDNRYTQTTAKKTPRFLSKQEEKTEVT
EGKSEEERIWEDKRAYAKRAVNAINFSVKKLVEESDKKSSQEEGFKVDHH
SGSPNALTKSPDKQPSIDKIAIQPEATKEEEEAPALLKGKQITCEDLKDN
GYTVNFEDISVLELLQFVSKISGTNFVFDSNDLNFNVTIVSHDPTSVDDL
STILLQVLKMHDLKVVEQGNNVLIYRNPRLSKLSTVVTDGSAKDNCEAVV
VTRVFRLYSVHPTSAVNIIQPLLSHDAIVSASEATRHVIVSDIAGNVEKV
GELLAALDSPGTSVDMSEYEVRYANPASLVSYCQDVLGAMAEDEAFQIFI
QPGTNKIFVVSSPRLTNKAIQLLKSLDVPEMAHTLDDVTSPASALGTSGA
ANPKSLRFFMYKLKYQNGAAIAQAIQDIGYNLYVTTAMDEDFINTLNSIQ
WLDVNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWD
FGVQWVALGDEQGKVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTP
GQLAGISDMMYASSAFGLGIIGNVLSHKGKSFLTLGGLLSALDQDGDTVI
VLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQETGTVTQNIEYEDIGVNL
VVASTIAPNNVVTLQIEQTISELHSAQGTLTPVTDKTYAATRLQVPDGCF
LVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPK
VISSFEEGTKLTNKEGYRYNWEANEGSMQVAPRHAPECQHPPALQVESDF
KMLEIEAQ
>CAB264 hypothetical serine rich protein
MAGVSGIGGSGGPRNIPPHDHDDDKRSDAHQFGGHNIVYGNEAGEHSPSS
VKDRAQLLMQSGFQVHNPEEVASRSSVSQSEGTKSGFFGRMWDAVKGIFG
KKTQKESVTEISGPEISGYKKYGRRLPEARALRTHFQSQEGGMRIDSGDT
DIADAEEVAVGELVDIEHSSDAESSSKTSGSPGLAKRVRGWWDYANRKQE
EPVDGRVGLSLGELQDMADRFAKMMNETDNESERVLFAQYRDTYEGYIQD
MLSSGATSSYDKYSLLDGSFDETASVHHRDEIGEAIFLDSDQDVSQASEA
DLMRMMDTGHNANSILGDLSPEVQQVLKEAQSMRASLDAGISDNVTPQLR
ERILSAMHRLLSGIQSILTVIRNSLIALSRLVRSGLRALGEFVRRRGTVT
EDHYHVPINDADIYPGARELLTQYTDSSSSDGSEENFVIPRSVVEAWADG
IPEVVYMTRVGEGFRVDDEQLAENRDDVVYEEIPVRNFLPRTQEDAVYET
MHPRGLGSTPVEDDEVVYEDMSGQQGNTQEEPVYDTPRSSPIYDVPGSAS
DLYDVPRPFPLLNEVDDQGYMIPSAIRGGGVLGVTPGFGNALVAVSSAAY
FDRLIEENDRMREGIWTTQSSADFGLEEARRSYAREGRPLPSLPPLETPP
PSPYGNNRVMQLLRQLQSGISNAWKSRRK
>CAB167 conserved hypothetical protein
MSSPINNQPITNVTTTTTTTPVVTTSTSFGGHVVSTTGTEAAETTSQTVN
TTAEQAVSQAESDAGAVVFTTERSVSTTSPSTGSVGTTATAANLLGSQIL
GLGRSRTDSTSSSDSDALSDISSTPSSHDSGNVGSTEDLTSTSGDVDLGD
LEGLRGTEAADGAARPDGPGGLPDMALPKYDPTDKASIIKFLSTPSVQAK
LQTKAGHIVYMDEARGSFIFVRNGDWSTAESIAVTNGKTKEPITDVKDLE
MCIAKFCVGYETMHADWTNNIQPRIAGQTGETGHYDHLLMSMKFKTTVLY
GPWNSKESSSNYTPSVWRRGTKCESGAIWGDVGGLKGINWNNVQRPNEGM
VFSRETSSPTQQQPQPVPYAQPVINVNLGGISTSVNVTGGTTTTTVTSTT
TQPTDTSDNGVDNDQNVDETNFDDTETESTGTQEDHSIQFSDEGNGFDSL
EPAPPGPPPPTQGGVNITGMPKDSLQQVLQNVRQHLDTVYDQNSEHHEGN
QDLGTVVRTSENGAYKPTVLLNKDQGSGGGGVQRRESNDNEDSELGNILG
RVREHLDVVYPEGGNGEAIPVNQNLGEVIRDVEAGKTPKPTQPEGIFVAK
RVNVDANGEIVNNNSKTETGSRTNTRIETGSRTSNLMGATSGDGPEGLEH
LLPQLRAHLDESFDAQGNLITPQKTNVGKLVKAFQERTGSGGIVAPMPAQ
STVIASRPVQQQSATISVLPQAQTAETVAPREAPDLHGAARDVASSLSNL
LEAATPSVGQQVSTPAPQQQVASSTPVAGSRETATLTKGEAPSGIPEAAG
NVIQALSNVAKKIQMFEQGSRLLQEALDSADTESTQRKQLADAARNVTTQ
LSKTLSKATGSPPPPPQRRS
>CAB036 putative type III secretion or flagellar-type ATP synthase
MDELTTDFDTLMSQLNDVHLTTVVGRITEVVGMLIKAVVPNVRVGEVCLV
KRYGMEPLVTEVVGFTQNFAFLSPLGELTGVSPSSEVIPTGLPLYIRAGN
GLLGRVLNGLGEPIDSEIKGPLVDVNETYPVFRAPPDPLHREKLRTILST
GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG
ERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARGGYTPSVFSTLPRLLE
RSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHVVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEASQQLRAIFR
>CAB444 conserved hypothetical protein
MAASGGAGGLGGAQAVDVAQVQAAAAKADAQEVVASQEQSDISMIRDSQD
LTNPQAATRTKKKEEKFQTLESRRKGAAQTEKKSESTGDKSDADLADKYT
ENNAEISGQDLRSIRDALHDGSSEEDILDLVKSKFSDLALQGIALDYLVQ
TTPASKGALKDSLIKAQQTHMQQNRQAVVGGKNILFASQEYANILQTSAP
GLRALYLQVTSDFHTCEQLLQMLQTRYNYEEMGTVSSFILKGMSADLKSE
GSSVSPVKLKVMMSETRNLQAVITGYTFFQDKFPNVMASLKADGASIPED
LKFDKVADTFFKLINDKFATASKMERGVRDLVGNDTEAITGILNLFFTAL
RGTSPRLFSSAEKRQELGTMMANALDSVNTHNEDYPKSTDFPKPYPWS
>CAB876 conserved hypothetical protein
MTMSQSPGSLSDTEDSPEKTTDWDAGFSQGFSEGEASGYDKAFQELLSLI
QIFRKLSIRMLSEIEKIPQQLKPDLVELAILTCEKFLYKKLDNVEELALL
ISSALQQHTSLRSLSPVKIFLHPEDHKKLNDWIATHEIPMIKHAEFLPDI
SCKKSSYKMEVPSGILRQEIGEELDHLLSVLTV
>CAB039 possible flagellar or type III secretion protein.
MTVAAEPSASWLKSRQDFLSSLVKTEEAVALPPFPKELCQNRLKEKFRLE
DTNLTIQPRGSLTAAQAVQDFGTHFLVQSFLAQPLTSGTFFFVTSEADLQ
SFMVSVFNDSSLASYFYEKDKLLGFHYYFSAELCKLLQELAWIPSLSVRV
VGDARFSTKDLQGSYQAVDVNCGLDGKTMRFRLLFPEATCASCQDFLSAS
NQNFDIHQLDPTPLTMSVEIGYCQLTQEEWQQVAHGSFILLDSCLYDPDT
EESGGLLTVQGHQFFGGRFIDQTSGEFKITSYPSVPQEAPTEETPEALPA
APLPGNYKLVAEASRYSLTVEEFLHLSQGSILNLNGIHPSRGVDLILNGA
KVGRGEIVSLGDVLGIRVLEV
>CAB373 putative inner membrane protein
MPNKIFSFLIFCMDDLALADTSSEQIHLPGMFPENMKLEMFKMLGSLTLL
LALFGIGVWAFKKFLRSKGQGLGNSSTIKILDRRSINPKTCIYILRVVNK
ILVIAESGENITLLSEFPPDTDINDLMQQNEKKRSSPTSAFLSKSIQKFH
KNKKTDDSRVSNFTDKEV
>CAB723 conserved hypothetical protein
MAVQPINTTSTASIASGEATQATQLPPLDPLNTPPIGALLFSIYELLLQA
IEIRQQTVLTQSQQLNDNTNIQQQLNQATNQIKFAVVSAGAKENEITRVQ
NQNQNYSAQRSNIQDELVTARQNGQIILSHASTNINIIQQLASQDSSFLK
TTSSIGSTVNQLNKPPS
>CAB907 putative type III export protein
MRFIFRTFLCMFILSAPWCLADNGLYDTSCSSRCQPSKPTELPVASPQPE
VKKTYPQPTFRERVTADDVLPREHLSEGSFSDTYPDLTTQAVILIFLALS
PFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPT
GVAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTP
KSQIQSFYKISQKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLI
YLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWTLLLQGL
MISFK
>CAB906 putative type III export protein
MKFFSLIFKHDEVVPNKKVLAPEAFSALLDAKELLEKTKEDSESYTNATK
EECEVLRKNAKEQGFKEGCEQWNSQLAYLEKETHSLRNKVKEALVPLAIA
SVKKILGKELEIHPETIVSIIAKALKELTQHKKIIIHVNPKDLAIVEQNR
PELKKIVEYADTLIIAPKADVTQGGCVIETEAGIVNAQLDVQLAALEKAF
STILKQQNPVDEAQNKQE
>CAB877 putative flagellum-specific ATP synthase
MTHLNYEKSQLHYWQPYRTCGLLSRVSGNLLEVQGLSACLGELCRICTPK
YPDILAEVIGFHNQTTLLMSLSPMHHVALGSEVLPLRRPPSLHLSDHLLG
RVIDGFGNPLDNKESLPKTQIKPLISPPPSPMSRQPIQEIFPTGIKAIDA
FLTLGKGQRIGVFSEPGSGKSSLLSAIASGSKSTINVIALIGERGREVRE
YIEQHASGLKHHRTIIVASPAHETAPTKVISGRAAMTIAEYFRDQGHDVL
FIMDSLSRWIAALQEVALATGETLAAHHYAASVFHHVSEFTERAGNNERG
SITALYAILYYPNHPDIFTDYLKSLLDGHFFLTHQGKALASPSIDILLSL
SRSAKKLALPHHYAAAEKLRSLLKTYQEALDIIHLGAYSPGHDKDLDDAV
KILPSIKNFLSQPLSSYCQLENTLKELEALVNLE
>CAB875 putative flagellar-related protein
MFFQFLKKKVASLGISPLGILLVFSALGGAIFFRNNASNSPDFPSPPEKK
TSGWLKLSQVAHPKLLESLAKKEQLERDLTMFQPVAHATVALSLPTEDDP
HIVPQVSVILSSHKNEMFSLPLLQSITDYLSSSVPGLTKEHITLSDNLGN
TYSPGELSTNSLLLSACEQYLGKIFPKEHFALACLANNTPGIQLTINEKY
LAKFPKEKRTTFLLHAEEHLKKICGPAQPIVIEKFPFSQTIKKDRLSYKL
LVGGTILLSSLGIIALASFYLAFYAYECIPSESKKIKQGINITKLVEILQ
KESPEKIRLILSYLDPKKADEIFKHLPEDIKHQVLKL
>CAB446 putative membrane transport protein
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTTFYLSSFFAK
HLGSFLVSIFKEAPINHDPRVTLYYLNNCLTLILTTSLPLLGAVGFVGIL
VGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKVKTLIELLKSILKIFGA
ALILYVTLKNRVPLIIETAGVSPIVIAVIFKEILYKAVTSIGIFFLVVAV
LDLVYQRKNFAKELKMEKFEVKQEFKDTEGNLEIKGRRRQIAQEIAYEDT
SSQIKHASAVVSNPKDIAVAIGYIPEKYKAPWIIAMGINLRAKRIITEAE
KYGIPIMRNVPLAHQLWDEGKELKFIPESTYEAIGEILLYITSLNAQNPN
NKNINQPDNL
>CAB414 flhA, putative flagellar biosynthesis/transport protein
MVTSKQEKLWRMALIPLGILLSFLIPLPQLLLDTGLCINFILSLTVVFWV
FSLKSSLEARLFPALFVYLCLFRLGLNLASTRLILSSGWASPMIFSLGNF
FSLGSLGAGIAACCLFFLVNFLVIAKGSERVAEVRARFILEALPGKQMSL
DADLVSGRASAMDVEKQKQDLFEESDFFSSMEGVFRFVKGDAVVSCILLI
VNTIAAAYFACSVDRESASLWLTVVGDALVSQVPALMTSCAAATLISKVG
QKASLLEYMIDYYEQARVHFRTIALLFSSLLFIPGTPKAPVIVFAIALLI
AYKPPKDVQGPEILSEIFQQIHLSLSTDYTGVNPHELYAQAREEIFNETG
VFLHQEMKIFYRDKPASLSCCGKHFHLEEISLSRLLPILRNLLPEAIHGN
YVKMLVRQAQNVLGISIDEIIPKKISENSLLFLIKGLVKERVSLRLFPKV
LEAIALYGSPEENPEILAEKIRKYLGKHIGRALWDQQNTLEIITVDSHVE
RMIGDLYSKSNPLMCDKVICQVQTLLNQSAGGDFRAIITGCESRFELRKM
IEPYFPDLLVLSHNELPEEIPISLLGSVSDEVLTL
>CAB917 gspD, probable general secretion pathway protein D
MRFWRTPLVYFFGLSGLACCTPGLALTVAEKAASLEKSKDSIDISSGLAS
FNAEMKEYNLQLKSLYEEAAALRASGCEDEARWQGLLHQLTDVKNQIQRI
ENLWAAEIRERGENPDDYALWHHPEATIYNLVSDYGEDNVIYLVPQDIGS
IKVSSLSKFTVPKEGFEECLMQLLSRLGIGIRQISPWIKELYTTRKEGCG
VAGVFSSRKDLDLLPPTSYIGYVLNSKNIDVRADQHILRKFANLDTMHID
AFGGKLWVFGSVGEIHELLKIYDFIQEDSVRQEYRVVPLTKIEASEMLSI
LKAAFREDMTREGDEEGLGLKVVPLQHQGRSLFLSGTAALVHQAIDLIKD
LEEGIENPTDKTVFWYSVKHSDPQELAVLLSQVHDVFSGKEGTTPPSSEA
ILREAASTISIDTASVGSVKEGSVKYGNFIADSKTGTLIMVVEKEALPRI
KMLLKKLDVPKKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTI
SWTSSGILEFLFKGNTGSSVVPGYDLAYQFLMAQEDVRINASPSVVTMNQ
TPARIAIVEEMSIAVSADKEKAQYNRAQYGIMIKMLPVINVGDEDGKSYI
TLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVIIGGLRCKHASD
SQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKERHE
EAILSSRPGENTEFRQALFAGEEAAKAAHKKLEFISAIELPASQVQGLEY
DGR
>CAB916 gspE, general secretion pathway protein E
MGGKSLLSQELLNALPYSFLKKHCLLPLEEQENGITMAYAHSTSLMAKDE
VQLLIKKPVLFILRDETDILKNLQKIYSNLEGKASDMLLSMKEGGLSQAS
EEEDLLENTDAVPVVRFLNLILKEAIEERTSDIHFEPLEDSLRIRYRIDG
VLHDRLSPPAHLRSALITRIKVLAKMDIAEHRLPQDGRIKIQIGGQEIDM
RVSTVPVIHGERVVLRILDKRNVILDISGLHMPKNIEKSFREVIAVPEGI
LLVTGPTGSGKTTTLYSVIQHLSGPFANIMTIEDPPEYKLAGIAQIAVKP
KIGLSFACGLRHLLRQDPDVVMVGEIRDQETAEIAIQAALTGHLVVSTLH
TNDAISAIPRLLDMGVEPYLLSATIIGVVAQRLVRKICPNCKEHCAASVQ
ERAFLHSIGVDADVPLYYGKGCAQCFRSGYKGRQGIYEFFHPDAALRSEI
AMHKPYHVLREYAEQKGFQPLLQHGVTLALSGETTLSEVFRVTKRYD
>CAB915 gspF, general secretion pathway protein F
MPRYRYTYLNAKERRKQDWIEALHLQEAREKLAQQGVQLLSIREVPPRRV
RLKNSELIIFSKQMLLLLRSGLPLYETLSSLRDQYQGQSMSGLLTVFMEK
LRGGGSLSQAMATYPGIFDNFYRSAVLAGESVGNLEGCLQNIIIVLEERE
QMTKKLTAALSYPIVLLVFSLAVILFFLTGVIPSLKETFENMEPNTLTSI
VFGLSDFVCKYKYLILGFLGLGMVSIIATRRQPFWKKWYENTVFSIPGVK
NFFVKLGFTRFCSVVSAILRGGGTLIEGLELGCGAVPYDVLREDMRQMVH
AVIEGSSLSKELAKRPWVPKLALGMVALGEESGDLADVLGHVAHIYNEDI
QKTLTWITSWCQPVILVFLGGIIGIIMLAILIPLTSNIQIL
>CAB914 gspG, putative general secretion pathway protein G (periplasmic)
MKKQKRKQSITLIEMMVVITLIGIVGGALAFNMRGSIQKGKAFQSEQNCA
KVYDILMMEYATGGASLKEIVDRKESVLEGAAWCKEGKKLLKDAWGEDII
VKVNDQGDDLIVFSQRATGTNKKHG
>CAB477 incB, inclusion membrane protein B
MSTTTPLSSSNQPHDQEGLNRVLLRFNERINIVDNRVRQIEERINLLDRS
AFQAVAIGNHAANNIALLKEEVDNLKRCLSTVTELLFESRGNPKTESPHS
ENDVTYTMDSTPTSTCSKLVAVALTLLALIAIAMLVICIVSVCGGFPLFI
SLLNMYTVGACISLPIISCASVSIMILCTVSITSLLRSRPAIYVVNNSQI
EA