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# Parachlamydia sp. UWE25, UWE25

>pc0938 hypothetical protein
MRLIKIFLLFSFFFSIFHLFGNNDFIAAKTFTSVTSCRQPDLIAYLTAEK
SNEIIPINLSNGREGVPIIIEPATKILAMHAATNEVYFVEEDLKQIKCFH
LKTKMVREVGSLNQVPAKFIVPADKKVAYLSYEDSNDIDCLNLLNGQLTK
VVNLKINPSSIAFDSKNQRLYVSLKNQNEIKSIHLASLETTSFALLDHNI
ESLTITNDGQKIYALQENNHQLSIVDAQTQAITHISLKNDSGILQKKTNS
FVLHPNENHIYILKESADQIIPVNLLTGALEPLISVRQSIQNINFDDKQG
IVARFSVKEAKSGLPTVFDASETILIHSGEVSYEWEFGDGLKAVSSQPII
EHVYDNTGHFTATLTITQKVENDFIAPYLEYLMGNPFLTSSTKKSFDILS
SKNEGLEKISKKQQAAKNTADSDFVAEPSITHGQPSQTTIFYGHTVFDSA
TVTGSFTGGTPTGTVTFFVESTQVGSPIALLAGLNNTAVAVSDPYYPTST
GNYQFKAVYSGDSNYEPSSDSSATNTFIVNPAPSITNLTTNINPSYFGET
VQLTATVTLSNTQINETPTGTITFKDNNTVLGIVTLTSSSTANLSISDLG
VGTHSLTAIYSGDAKFAGSTSSLVTQTVTKGTTMTVLTSSINPTIFGNST
TLTATVNINDGSGTLTGAVTFKDGSTIIGTGNVNAGIATLNVSNLSVGSH
SLTAVYGGDSNFNTSTSTALTQIVNKGTTTSNIVSLTNPTTYGQPTILTA
SIAVATGVGTPTGYFTFKDGNSTLGTANITGSNASLTIANLAVGAHSITA
VYSGDLNFSTSTSSVISQQVNRATPVISLTSTLNPSNYAEEITFTASISS
PTTLDLPSGTITFYDGNTSIGTGTLVQTGANKSQATFTTPNLNGGNHSIT
ASYPGDTNFIAVTSSTLDQTVILANTNTLIFSNSPNASQFGQPITLQANV
IGSVATPPLTSSGTLSFYDGSTLLGAAPITKLSSNVAFATLTLSNLSIGP
HTLSAKYSGDVNYNPSNSSSMTQTIIFTATTITTVTSHTPSVFGELIKFT
ATVNSHIPGMGNPTGKVEFYDGINLIGSGTLAASGANQSQATLQISSLGL
GTHRIGSAYLGDGDFTGSLAPLINQIVVKDTTTTTLASNLNPSNFGDEIT
LSATVTANAPGSGISTGTVTFKEGSKVLGTGTLNANGVATFSTIKLYPGN
HSLTATFNGDFNFISSTSNTFKQTVINQLPTKIKLTSFRNSSPINQTVTF
SAEVTALTGIPTGTVTFYDNGVAFGTGTINANGIATCIEPANRLNTLGLH
PITASYSGDINFITSNSSTYNQYVVPYDTSTVLVTLPNHSEQANATLTAT
ITATGSPMPIPSFTGTVVFYEGGNAISPPIPVDPLTGIASFMPDNLHFGP
HPISAVYSGDQIIFATSTSNSIVQQVQQTDMLTTKTVLTASPNPSYFCEM
VELTAAVVATQGYYTPTGTITFFNGEIAIGTSILDANGIAVLPISNLSVG
THQLTATYNSDSNYAFSISNTITQQVNPNTTLTTLSVIPNLSSTPYGQTL
TFVATVDGLDGLPTGSVIFSDQSGELATIELDESGEAVFTTDSLPTGTHD
FTAIYDPSCCSVKNPCYSPSSATLSHTITAVDLDTILTASPSPSIYGNTI
ALTATVDSFTTGSPTGTVTFYNGSTLIGTAPIIQGTARIDANNVQAGVAI
FNARYNGDINFIAKNFPSRQQIVNKAPVNVALTSFTNPSLYGQLVTFNAS
VSSAGLISVPTGTITFLSGTTNLGQATLNNGVATFSTSILNVGSNSITAL
YSGSSNFLTATSSALTQVVNKSATTTTVDFSPFNASTFNSSVTVNVTVAS
VSPGGGIPTGAVTGYYGSVSLGTATLNNGIASFSTTILPTGTPTVTVIYA
GDAKFTESQGLATHTVTAAMTTMATLTSSNNPSVFGQSLTLSGKVNSTAG
IPTGQVTFYDGTTELGVATLDSTGRAAITRTNLNVGSHSITLKYLGSGNF
AASTSAALNQVVNKTPTTTVVSSSQSISIYGEPIDFIATVGPINPGSGIP
TGTVTFKNGSTILGTVSLNGGGIASFATPMLSANNTPYSITAVYNGDANF
NSSISSILEQTILQVSTRTTATSSPNPSTIGNLVTINVTVEPINTDVFTP
TGIVTATYGSTVIGTGTLDSTGKITFLTTTLPAGTLPIVIKYAGDSNHAQ
SSMTLSQTVLQASTVTSLTSSLNSSHVGETITLTATLTSPFGTPTGNVAF
FDGSSLIGVQALNGAGVAIFSTSSLTLGTHQIKALYQGDANFTASTSPVL
SQNIIAATTSIALSSSMIPSVFGQTITLTADVTILAGSGVVSGTVTFNEG
SVVLGTSGVSNGIALITISNLSVGAHTLKATYNGNSSFGNSTSPNLNQIV
EPGTTKTFLSSSSNPSQFGDVITLTANVSTTGGNGTLTGTVTFKNGSSVL
GTGTISNDQATFSVSDLGVGTHTLTAVYSGNTNFEGSTSSNLKQIVNKSS
SLITLTSSINPSEFSQTDTLIATIPAGTASVTPRGTVTFKDGSLMLGTVN
ISEGRATLNMSNLTVGSHDLTATYNGDGNFAASTSALLTQIVKAAATTVL
LNSSTNPSVFGNSINFSATVAPMLGTGTPTGTVIFRDGNVVLGNVTLVGG
VANFTTSTLSVNTHAITAVYVGDGNFAASVSSPLSEQVNQGATATSLSTS
ASPSTYGQSVVFTANVSLITGSGSPSGSVTILDGTTVIGTATVDNLGVAT
LAVSNLSVNSHSLTAVYSGDSHFATSTSSILMQNVNKANSSIDILTTSPN
PSRLGENVTLFATVTTPIGIASGNVSFYDNQSTLLGTVPVYNGLAIYSTN
LLALGNHTIKAIYNGDANFNASTSPTVVQTVNQTNITVTTVTNLNSALNP
SNFGQNIDFTITVAPITGSSTPTGIITLYFGSVPLTTLNLVNGQASYSTT
TLPSGEITLVALYSGDASYSSSTDTLVQCVNKVGTNVKVVSSINPSAYKQ
PVTFTSTVTSGSETPTGTVTFYDGSIPLGTSALNEGMATLEVISLAPGSH
SIIAAYNSDLNFATSTSQTLIQVVTRDTIPQPPQNFYGCQIVNQFVDKDH
LVNVLYWIPPQENANIVFYEIYRDAQLKRCIGKIPNQCPFQFEDGNRKKN
KAYTYYIVSVNKKGVKSAPISTKVFPIKKRR
>pc1396 unknown protein
MALEQKIEAVKKVGEALNKQQPQIHEELERVAPNKEHFQNFLNTSSTIQP
SFQRLDGSVVAPEQAHSVENPIFGDENVTVQGNGTATDQENKKKKQLQND
EIEGIAATTNKKTTPSSLIEEVGKLNTKVAKISTLTPEELRNQAQSVIAQ
IDQVKTQLSQTQAEIKPSYQNLLRNRLTHIDDNLKIALSKAGVEYTPPAA
QVTDINSPNPIKRFIGYLTSSQYQLEHLNQTIEHLNLTKVQMTPASMLAI
QIKVGYIQQQIELFTSLLNKALESTKTIMNVQV
>pc1895 conserved hypothetical protein
MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGI
EKIHTVLDLHFAMHPEEKENVAMNWKKILSDSPLVKNSRDLEKDGWGVEY
TVTTKENGEIEITSAKYTDYLNKKGQGSLFKDSK
>pc0921 hypothetical protein
MKKPTSWLLIANSSSAKIYEIETIRSLAIVETFEHPESRLHNRDLVSDKP
GRDFESFDQTRHSMEPHTTPKQNEFNIFAKQLASYLETARNDGKFKKLYI
SASPSLLGLLRQFLHTPTAKLVCGELNKDMTHMTPDEIMTHLPFFN
>pc1989 hypothetical protein
MLKLLSSLKSIGLELNSNSIKGAEVIERFGRPILKELFTTPLNSLSNVKQ
LYIQHPILTTGLDGMQVLLRSLTIPLTKTKDIEATLHFQAEPLLPYPIDQ
SLLSSQVIKQENDETKLLLFATKKDLLQTHLEQWLSFGIESEKVSCTQAA
LGQFSKQYLPHDQTFLIIHFEEKIVTAVLISESLILSSFTQKEELKILQN
EDDLDQFFGQLKKLVTKITLSFAKENQKIISGVIFTGEIAKWPSIYEQLS
QSIQLPLLPLVSTEDSFSTQEKLCYAVPIGLAFGSLPKATPSIDFRQGKM
SYPHPWRRLKLPIALYFGLMFCLSFLFYFFGQSYLSHQESLLKQEYVNTL
AGMNKSYEQFENSYLTKNLSAREKSQGEVVEITQLNRQDLLDRLTFLQKD
LQATPDSFPLFANIPKVSDVLAWLSLHPAVSFLTQEGKREHHLQIESFNY
TLIKRPMQGKKQDKYQVKIELEFSSGTPKWAREFHDALIASNDWVDPKGE
VKWSSNRGRYKTSFFLKDKTIYPSQ
>pc0913 hypothetical protein
MPELKNNKRTRHDKIDELGNLMKFWQILDKFLDRFFVVLGAFLGSQIPEF
LQQYVQRLAGHVDELKYIIDQLSQLASASNKSLEQYIQKFVHSSDLDFVK
QGEFMQALVTRWQNLNDSLRSLAQSSYFERPFVFLKEMNYPIAQETFYSY
QAGINLTLEGLGYTAIGIIVGILLYQLISKIFKFGSQRVASFFRPRD
>pc1159 conserved hypothetical protein
MLFFNMIPIIAMKYYLLIPFFYLLIFSTLHPVQGQETAYGEQLGEIDFSP
ESQNHLPQKSISLEENLHDPLIDPELTETDHFQAKFMNMLFILGLLISFM
LLASWMLKRMTKSKVTQMNQASSIKVLETRHLTPRSTIYLIEVKGQHLLI
GESVAGVSHLATIGFLEEGDDTNYKRPAIPPYFSNPTKLS
>pc1475 gspD, putative component D of type II secretion pathway
MASDEKYDEFAKSSSAYVNPSLNQGTGNIKIVKKKSFQNDSLKNIVGVTS
NTKTAVGQVSSLHVSSSDELMDDLGHFLANDDKLLAQLTNGEQSSSLLNL
NIPLDSDHIPLPILTPSQYPKESPISQPSPSQIDLAPSASQPSQSIIDRP
QGSVDLPDITQPPANPQKINENNPSILTSPRSANSSPAKASTNLETAPQT
DVPSNGQGLKEISINFNNVSMIEYIRFISRISNKNFIFDDEDLQFNVTIV
SEEPTSVENLMAALLQELRIRDLLLIEQGNNLIIHRNSRVRAPSRIVFSG
TEPTTFETEIVTRVFRLNTLDPLKASEIIRPLLSEDALIEVLRDSNNLII
TDLVTNVNKIAQLISTLDAPNSGVIVGQYVVRNAFVASLADLATKILQPI
AQGNPFVLVPHSSTNSIFIVSNPFIVDKTLAILENLDINEGKTKILDLEK
LRIQQEEATRLRYPPGTHPGAPDSSAVPEERDTSGVGTGGISPKGTPLRA
GDTTGTLNIPGAPLNPNFLPGNEERLGIFKENREFLPGGISPNSRWAQDL
PAGHIERTLFFIYKLRYRKGEQIVMALRRIGESLQMTGLANLDLIASINS
SQWIESSNSLIFTGTVPALERIKELILEIDTPLRQVFIEMLILDTTITDS
LTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIVDTVLSGD
GYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTA
EVFVGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITL
DIIQEVTNDGGNANPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVI
LSGMIQSTESRSVNRIPCLGGLPLIGGISKQKSNRDSKRNLMIFIRPLIV
DTEEDLESVTKRQQDVCIEKSKFKRSWNYELDEAMDFLNLKLTDPDEIGR
TVR
>pc1898 gspD, putative protein of the general secretion pathway
MWAQSISEKKANLQSSESDLDQEMDRFLTQVNRESQHIQFQIERLYDEVF
KLYQAKAPVEDYKELLNRINQHKKHLNQLENRWRDLAVRSNKGEAYGLWH
APDTTLEQLIIDYGSQDYVYLIPPDVGAIRLSIDSNLPIPRSSWNEMLEL
ILNQNGVGIKTLNPYLRQLYLITLNNSNLRLITNKRQDLEILPIDSKIAF
VLSPEPSEVRRAYSFLERFINHNTTVLQVLGRDILLVGQVGEIQDILKLY
DFIASNRGEKDYRLIPICKVRADEMARILTAIFDQEEGDTSLAIPANGES
SRQYARGDVNGLKIIVLDNMTQALFVVGTKEEIRKAEDVVRNVENRIGGV
RDKTVFWYTVKHSESEELADVLFKVYNLMITTGTGVRSDGQGIVSRNAGT
EINVIDNNSAPPPITPPILNPQKEPPQTLYGQEGYYQEGGFIVNPAPAQP
GAFIQTDPNVGRDNFIVDAKSGSIVMVVEADILPKIKELLRKLDVPKKMV
QIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPVKGEFT
PANAGVFDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQT
PATIAVNEDISINTGIFEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQ
HDTEDEWDFDYVTLETDITFDTIHAGGDRSRPDVTRRHITNQVQVPDGDT
IILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNSLKDSSSEMFIFITPH
IVKDPKEQLQCLRQELLCLRPGDVPYFLECVQEAHRYEKTRLMEGSMTVL
FGRPRERYYISDCCKVDDHSQLEGEYDGR
>pc1897 gspE, probable protein of the general secretion pathway
MTGDNEETGNKEFLLKEKLGGEQAQAKLAEQFGMTCYLDLSSFRVSKERY
RQVPYAFAKKHIILPVEDQGTIVVVAVADPLNLAPLEELRFFLNAEIEAV
YSPRDVILSAIHDCYNTEHGAASQLIAGMGDKSEEGKEGDIEIFDLFDQS
KLQSPVVQLLNLILTEAIQQGASDIHFEPSENGMRVRYRIDGVLQNRHAP
SQDYQTQLLTRIKVMSKLDIAEHRLPQDGRIKLRMGRREVDFRVSTVPIA
GGERIVLRILDKGNVLLGLDKIGMLPSVFEQFQKLVSLPEGIVLVTGPTG
SGKTTTLYSAICDMTNDEINIMTIEDPVEYNLRGIAQIGVHHKIKLDFAT
GLRHILRQDPDVIMVGEIRDKETAEIAIQAALTGHLVLSTLHTNDAPSAI
TRLVDMGIEPYLLSSCIVGVLAQRLVRRICSDCKETYEPSPRELQSLGIR
SEELKNGFLYRGKGCSSCYGTGFKGRQGVYELMPVNHAINKQIVQSPDAI
EMRKVALSQGMVSLLGHGAELVKQGVSTVAEVLRVARGIEEEG
>pc1896 gspF, putative protein of the general secretion pathway
MPLYQYQYVDEKKKRRTGVIEAISERDAKEKLRDQGLLITQIQTKSKING
KQNLKGEALLAFTVQLSQLVNAGIPLYESLIAIEEQSRGESFHRVVLSLC
EQIRTGMSLSGAMATYSESFDQLYCGMVAAGEAVGMLGPILEKLTQLLAK
QMKLKKQITTAMIYPCILGGFSLLIITLLLGFVVPSLEGIFAERKLNAFT
NAILGLSHFFRNYWWLYLPAFVAGTVFVIWKFRSSEGKLWMEKTLLRIPV
INTLVIQTAVARFCRTMGTLLQGGLNMIESLRISRGVMHNVVLEKEIQQA
EAKIIEGHSLSQELGKSKYIPPLVSKMLAVGEESGTSIVMLSRIADMYEQ
EIEKTLDRVMALAQPVILIVMGLVIGTVLLAIMLPLTDVSSFSAG
>pc1545 hctA, probable histone H1-like protein
MSLKDTFKNLRELLSNITSDLEKSENGNKAASQRVRTGTVKLEKIAKLFR
KESIASEKKTKGQKKPAKTAPKAAKAPAKKAAAPAKKAAAAPAKKAAAVK
AKPKAKSTSFRPRQMSVKRATAKIPTRKTSA
>pc1397 sctN, probable type III secretion pathway protein sctN
MSLFSIYYCFQLRVNFMFFNDQIDKLLDDLDELQLTTVNGRITEIVGMLI
KAVVPQVKIGEVCLIKRAGDPLRAEVVGFTKDEVLLSPLGEMTGIGPSSE
VIPTHLPLHIKVGPQLLGRILNGLGEPLDEETKGPLILEETYPVIQAPPD
PVKRMPIHNPISVGIRAIDGVLTTGLGQRVGIFAAAGGGKSTLLGMIARN
AVADVNVISLIGERGRELREFIEKDLGPEGLKRSVLVVSTSDQASQLRLN
AAYVGTAIAEYFRDQGKSVILMMDSVTRFARALREVGLAAGEPPARAGYT
PSVFSTLPKLLERAGNSDKGSITAFYTILVAGDDMNEPVADEVRSILDGH
IILSSELARQYHYPAIDVLSSASRVMNAIVPKEHLQLVGKLKEVLANYKK
NELLIKIGEYKRGADKAGDFAIDYIEKVLKFLKQGVDEKCSFQETVQLLK
SLFR
>pc1400 sctQ, putative flagellar motor switch protein (= type III secretion translocase SctQ)
MATPSASYDWIRTIDPELKNLDEIPLTGSAPPFPWEELSQRIAKSFDREG
LFIQPKELVWRSQENLYEGLGDSPFPLHFAIPTLQGQACWIMPEQEMAIL
ETWLLTKESHPISFQDRALSESFYRFFALEVLYHTNQLNFDKSITPILTN
QTSLPNESALCLDICLQFQEQIVWGRLIISKDLRRSWVEHFASRGPSHLT
TELAKAIDIQVHLEVGKTTLSLKEWSSVCLGDFIVLDSCSLDPQELTGRL
MLTVNGKPAHRGKIKDGVIKILETPLIQEVETPLQELNMPQEELPMVKQS
EEDDDDLSDLNFTEDEDEDEDFDFEDDEEETEDDDENFTLDEVTEEEQSS
PKNNASQSSPASSITENTKTGLITPNQIPVNLTVEVGRIQMSMDHLLKLE
PGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVLGVRVLELGH
>pc0750 sctU, putative type III secretion pathway protein sctU
MGDKTEKATPKKLKDAKKKGQIAKSQDLPTAFTFIASVAIILALASSLYH
QLANFLVGTFRSVNTPELSGVIVNLFYKANEVIFLASIPTMALVALVGVT
ITFLTVGPVFAPEVFKFDIKKFNPVDNLKAKFKLKTLVELLKSVIKISIA
SYLIYKVMYNSIPVLIQTVSMPISGALIVFHAFLVEVVLKVGLFFIVVAV
ADFIYQKKTFAKEMMMEKFEVKQEYKNSEGDPHIKGKRRQIAQEIAYQEG
PTGGVKRAQAVVTNPTHLAIAIGYERHMDAAPYILAMGKDVLAERIVKIA
EKNDIPVLRNITLAHILWEQGEIYEYVPEDTYEALAEIMRWIASLKDGTE
IPEPLNL
>pc0203 yscL, putative type III secretion protein SctL
MSKKFFTLIYGEQIHAAPKTKIIPSESFSKLADASSVLEHIKEDAEKYRL
QIAKECEEIKEHAENSGYEEGFKKWAEHLVKLEKEIEKVHKELQQLVLPV
ALKAAKKIVSKEIELSSDIILDIVANNLKAVTQHKHATIYVNKKDLDILD
KNKPRLKEIFESLESLSIRPRDDVKPGGCIIETEIGIINAQLDHRWQVLE
KAFESLVKIPVEQSPIEPPAQSS
>pc0202 yscR, putative type III secretion inner membrane protein SctR
MYKYKHISFKSLLCLLGLLVLFGLAPDTVYSQTNSTSTSPTTSTTQSTIP
NSSGRSTTSVRTTPRPLKPIPRPAYKPEKPTPLTDEQKAYQATEAQISEL
KRPSLITQAVLLSLLSLLPFIIMILTSFLKIVVVLSLLRTALGVQQAPPN
QIINGVAFLLSLFIMYPTAIKMYDAAQTAINQPNVPESFLSPGSSTYVIE
VASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYRETLKPDDFIVLV
PSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISMPL
KLFLLVMLDGWTILIEGLVKTFQ