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# Bordetella pertussis, Tohama I

>BP2268 methyl-accepting chemotaxis protein
MPMLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAV
NQVDPLFEASGAAQRQAATQFQRYVDVPKEPAAAELAATLQTRWRAYQSV
LDELAAAVDAGQAEPALAAMHRAQQAEHAFQRDMEAFLARVQAHSDEVRS
GAEDTHVVARWSAIALTTLGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIA
DGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAE
ISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVS
MQVAQRGGESVAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAA
VEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQ
QVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDET
TQQNAALVEQAAAAATAMEEQARHLAAAAAVFRTQGGAFIDVAAAPLAGP
AGGHAALPPAAAH
>BP1591 methyl-accepting chemotaxis protein
MRKKLKLAAALSATLAFFVLLFAAAAGAGVAVLRDNQAAIEALGRGNIER
ASDLGDTTSWLFQARAVLADAKTYMEGGLEEQRDAALAQAATLLEQVRAS
QERLRANPEMAAQGASLYDEVLAGYDALAVQALAPLHAALKGWNGIEANR
LAERALPQAAERYIEAVDAFQGYAREQGRAAVADAARVLERMVLGAAALL
ALVAVLAVVIRLGFRRAMLRPLTEAGRHFDRIADGDLTAAIAARGDNEIG
ALYSAMRRMQGGLTRAVESVRHGVEEIHTGSGEIAAGGVEMSGRTARQAG
ALQEAAASMAELAGTVRATAEHADQASRQAAGATELARQGGTAVAQVVAS
MRDIASGAQRIAEIVGLVDSLAFQTNVLALNAAVEAARAGPQGRGFAVVA
GEVRSLAQRSAQAAREIKGLIDDSSARVASGVQQVNLAGATMGEIVQSID
RVTQLVAGISEASATQAAGIASVNLAVADAERATQENAAMAEQTAAAAAS
LEAQAQALRQAVAVFRLAGAAPRSGGAGGQLVALDQQRQVAVLDLLLDAG
GGRGEVLRANVAA
>BP3834 conserved hypothetical protein
MPARLDARATRRYFDNAFNSPAVKILPNEYYVTNGEDVMLSTVLGSCVAA
CIHDPVIGVGGMNHFMLPEGDIHSPASATMRYGAFAMEVLINELLKAGAV
RERLEAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDV
HARRINYFPRDGRVMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPR
VERFDTPSRRDPVGA
>BP0939 conserved hypothetical protein
MDSKELIKQLERSGWTLRGVKGSHHVFTHPDRPGHISVPHPKKDLGIGLL
NSILKAAGLK
>BP1485 putative membrane protein
MRSTLRPLQPARRSQALSWALVLALGAGATGAEAARLGHARVVSPPGAAL
QVVVPLLELSADDLATLQVSLADEAAWRQAGLTPPVPLSSATVRIEPGAD
ASRRNVRISSSQPPAGNAVDVLLDLRSGAGQRQVQVTVLVPPRGSAARVA
PASVGTPAPAGQASAGSIDVRRGDTLFGIAQRNAVAGASVYQMLVALWRA
NPEAFIQNNMNLVRAGETLDIPDAATVRAIDPAEARRIFAQHAEAFARYR
GRAGALAAGGAAVSGTGEAGAGRLGSAAQAEAAGAATAQDRLRLSSAQGG
ANAQADAAGDARASSGRALDDAQQRVEKLQSNVDALSQAAGAGKTASGEG
SAPANASAGAGGQPGADGKAGADGKPGSDGKPGADGKPGADGKPGGAAAG
AGAATQAGAASAGSTGGNGAAGSAGAGTAGSGPAAAAAKGESSQGGMPGW
LADNLLAIVTAVLALIVFIVAWALRRAGARRDDDDEASAAYPEPTLDTAA
LTRKLDSISLDLDEPPTDEPRPGGKRT
>BP3818 type 4 prepilin-like proteins leader peptide processing enzyme
MQIGARRNNAACGIALPPGPGGPSGPVRAGCPALPLLVLPFRVPPGAMWH
VFPLDPALNVVLAALLGLVAGSWLSVVAHRLPRMMEREWRTAMREEDGGA
ESGYGLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCGQPIGLRYP
MLELAAAVLFAACAWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAV
TLPLIWAGLLVNLDGALAPLPLAVLGAVAGYLFLWVIFHFFRLLTGRDGM
GHGDFKLMAALGAWLGLGALPWLLLGASLAGVLVGWSLRLAGRVGRGQPL
PFGPYLALGGILMLLAAGRPAWLQFY
>BP3796 putative bacterial secretion system protein
MNDAAPDRQASVDFHLQALHPWLSRQDIAEICVNRPGQLWYEDRNGWNRQ
ESGALTLDHLHALATATARFCDRDICPERPLLAASLPGGERVQIVVPPAC
EPGTLSLTIRKPARRIWPLSELLRDTLDLPGVPGASQARPDPLLDPWRRG
AWDDFLRLAVQAGKAILVAGQTGSGKTTLMNALSGEIPPRERIVTIEDVR
ELRLDPATNHVHLLYGTPTEGRTAAVSATELLRAALRMAPTRILLAELRG
GEAFDFLQACASGHSGGISTCHAASADMALQRLTLMCMQHPNCQMLPYST
LRALVESVIDIVVVVERRAGQGARRRVVDIWYRDGLPAP
>BP3380 phage-related hypothetical protein
MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDP
EEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSG
LSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGT
DQGKHFVTAPANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
>BP2235 bscC, putative type III secretion protein
MAIGRLGYLVRGAWAGGVMLLAAGSAWAAPNWPLAPYSYYAQQQSLSDVL
REFAAGFSLALQQGKGVQGVVNGRFNARTPTEFIERLSGIYGFNWFVHAG
TLYVSRTSDVVTRAVDAAGASPSALRQALLQLGILDERFGWGELPAQGVA
MVSGPPAYVALVEQAVAALPKGAGNQQVAVFRLKHASVSDRVIRYRDQQV
VTPGMATMLRQLILGAGPGNDAALAAVAAPLRENPPVFGDAAADGNAPLA
GAAQAAGRRLSEPSVQADTRLNALIVQDIPERMPIYRALIEQLDVPSTLI
EIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAA
DLAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSD
TFYIRTLGERVATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVL
QEYPIDGLPRVRKSSISTLAVVGDEQTLLIGGYNNRRDEEQVEKVPLLGD
IPGLGFLFSSKSRAVQRRERLFLIRPRVVAIEGKPVFSPVAGTSQVFMST
GWGGHGSSLSIAPGEGGHTQVRHDARAGRPVRLVPDSLHVEYGEAGEASP
>BP2246 bscL, putative type III secretion protein
MAFLVPRPSLIQAVRPGRADPATDVLRAEDYAELLSAAQIVAQAHRRAGE
IVAEAREEFERERRRGYEEGRREALTDQAEKMIETVSRTIDYFAGIENEM
IELVMSAVRKIVDGYDDRERTVIAVRNALAVVRNQRQMTLRLHPDEVDVL
REGMNQLLAAYPGVGYLDLLPDARLAPGACILESEIGMVEASLEDQLCAL
RAAFERTFGRRG
>BP2245 bscN, putative ATP synthase in type III secretion system
MRQYHYITEMMRVALQDLSTLRIKGRVVQVVGTIIKAVVPMVKIGEVCLL
RNPGEDFEMHGEVVGFVRDAALLTPIGDMYGISSATEVIPTGRTHMVPVG
PGLLGRVLDGLGRPLDAAESGPLHAHKFYPVFADAPDPLTRRIIHAPLEL
GVRVLDGLLTCGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGE
RGREVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAYVATAIAEYFR
DQGQRVLFLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMER
AGMNQTGSITALYTVLVEGDDMNEPVADETRSILDGHIVLSRKLGAANHY
PAVDVLASASRVMNAVVSPRHKYLAGRMRELMAKYQDVELLVKIGEYKQG
ADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPES
>BP2241 bscQ, putative type III secretion protein
MNRVAGGAAAQAAGMVDLAVPRLSAGEAHALSRIACHGARFDVRLGEPAV
RWHCALTPCVHGDLADGEMESLQLQWAGTYIGLTVPRAAAAGWLAARLPR
FSGVELPEPIAAAALEAMLEEVCRGVAGLDQQGPVRVARQGGTPPVQPHR
WTLTVRAPDGGVWRAVLACDAWALQAVAAALDSVAPADGRVNPERVPVRL
RADVGAASVTAGQLRTLRAGDVVLLAQYRVSDAAELWLSAGPSAIRVRAE
HASFRVTQGWTPIMTEPATPDPGETPAQADATLDTDQIPVRLTFDLGERE
FTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDGRIGVV
LQSVRPGLA
>BP1028 cheA, chemotaxis protein CheA
MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAIFRAAH
SIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDV
LKSQLDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAAPEP
DPEPEPAPQPAAASTAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASE
RAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIAREAEPAHAPAQAAVA
AAPDAAATPTPAPAPAAAQAAEPARAARPSIAPAHADKESTSIRVGVEKV
DQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLERNARDLQEAV
MSIRMMPMDYVFSCFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERII
DPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIAIEVSDD
GGGLSRERILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTADQVTDISGR
GVGMDVVRRNIQDMGGHVQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGE
ETFILPLNHVTESLQPQVDQIYSVAGNERVMQVRGEYLPLVEMHRVFSVG
QAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVVVKNLESNYRKVPGIS
AATILGDGSVALIVDVLALARANREKWSQPEAILN
>BP1032 cheB, protein-glutamate methylesterase
MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELIKKHNP
DVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELG
AIDFVTKPKLGIRDGLIEYSEVIADKIRAASRARLRALAPASHAAPLRLR
SPFASSEKLVIVGASTGGTEAIREVLQPLPADSPAILITQHMLAGFTRSF
AQRLDALCAVTVREASDGERVLPGHVYLAPGGETHMRLGRSGANYVIGLQ
ASEPVNRHRPSVDVLFHSAAEAAGGNAIGVILTGMGKDGAAGLLAMKRAG
ARTMAQDEASCVVFGMPREAIALGAADEVVPLADISERILTRLGDRGHRV
>BP1029 cheW, chemotaxis protein CheW
MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAATVTRI
ANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRRVV
GIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIE
KLMTSDEMALVEKVAS
>BP1034 cheZ, chemotaxis protein CheZ
MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEAIPDAR
DRLRYVAQMTEQAANRVLNATEAAGPIQDGMARGAQALDERWQQWYDQPL
ELPQARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRM
MDVVGAIERELLQVLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQ
VDDLLASLGF
>BP1119 fim2, serotype 2 fimbrial subunit precursor
MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDP
SGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYF
EPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDS
KITMGANEATQQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAIT
TYVGFSVVYP
>BP1568 fim3, serotype 3 fimbrial subunit precursor
MSKFSYPALRAALILAASPVLPALANDGTIVITGSISDQTCVIEEPSTLN
HIKVVQLPKISKNALRNDGDTAGATPFDIKLKECPQALGALKLYFEPGIT
TNYDTGDLIAYKQTYNASGNGNLSTVSSATKAKGVEFRLANLNGQHIRMG
TDKTTQAAQTFTGKVTNGSKSYTLRYLASYVKKPKEDVDAAQITSYVGFS
VVYP
>BP1881 fimB, chaperone protein
MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPETTVKMS
NEGQAPALMQAWIDDGNAEAKPDEVQVPFFLTPPLARVDPGKGQTLRIFF
NGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYR
PKGLSGNPLTAAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGS
KTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQAAIAD
>BP1882 fimC, outer membrane usher protein precursor
MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGADLSRFN
YSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYG
QLEAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVS
IPQAYTINRFRRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLN
LYSGFNFKGWYLRNSSTLGWGQGRFTRRSQRTSLQTDIPSWRARLVFGDV
FSSGEYFAPYSMRGMLVGSDTAMLPYSERLYRPTIRGVARTRANVKVYQA
GVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTEANGAVQTFTVPYASAV
RLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADGVNLYGGLL
IAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKT
LSGTNTAIRLATLRYSSSGFWNFADAVNAGPVETNGRNGRFGLYSLLGRE
RPRGDFSVTLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRV
GVNLDVSRTENRRSTEHQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQ
SVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSWSGTYGEVSGQLTHGR
SYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVVNTRNAA
VDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVIPRAGAVVALR
FPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRGVS
ASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARA
AGQAVAQPSAISISGKDHEPDIR
>BP2674 fimX, fimbrial protein
MQAKTFLLGAALAGVALAAHAEDGTIVITGTITDQTCTIEDPSPGYIKVV
HLPTISKSALKNAGDVAGRTRFDIKLKDCPTTVNTLKLYFEPGPTTDYGT
KDLKAYKQAWYVDAATLLKSPPSVTEAKGVQIRLMNLNGKQIPMGETEPN
QHAAAFSGTMQAGQAKKSFTLHYLAGYVKKASGEVEATMLTTYVGFSVVY
P
>BP0996 flaA, flagellin
MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDAAGQAI
ANRFTANVKGLTQAARNANDGISIAQTTEGALNEINNNLQRIRELTVQAS
NGTNSASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQ
VGAKDNETIDIKIDRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSA
VTTTIASDTVTFDAAVAAAEQAAGAAAGDGSVVSYGDAANPQYAVVVDNA
GTLTSYALTFDKDGKAALGDQLGAVASQAAEAAVGVNDVASGDNVTVSGG
NANALSKLDDAMKAVDEQRSSLGAIQNRFESTVANLNNTITNLSAARSRI
EDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR
>BP1411 flaG, putative flagellar protein
MAVSPINAAAPALVSVAPAPVPAQPAAAVAPAAAAANGGGAQSATQDQYG
APKLPMDRALEEINAQLKAWSTQLQFEIDPDVHQVVVSIVDAETGDVLRT
IPSEAVIRIAKMIVKMQGNAVETTA
>BP1372 flgA, flagella basal body P-ring formation protein
MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQLA
ALPGEPSITLDPLRSDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTW
TVYAQATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDA
AAILGMRPAHRIAAGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEG
QALDNAPPGATVQVRTASGQVVSGIVQAAGLVEIQL
>BP1373 flgB, flagellar basal-body rod protein FlgB
MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDFKAAMQ
GALEQRMRLPDTNLALISARHIPGQATTPSPAELMYRLPYQPSLDGNTVD
MDSERVRFADNTLHYQSSLQVLSGRIRSLMSAIQE
>BP1374 flgC, flagellar basal-body rod protein FlgC
MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQ
VNPPAGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNV
DPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS
>BP1375 flgD, basal-body rod modification protein FlgD
MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMEN
AELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPG
DKVSLGADPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGD
LKTGVHTLQWDGNNDGGQPLADGKYSITVSASDADANPVKTEALTYGQVK
SVAYSTNGLRLDLGLAGQISMLDVRKVIGASGSA
>BP1376 flgE, flagellar hook protein FlgE
MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGL
GVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGE
FMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQ
TNLNANAKVIDPNDTPPEDGLVELDGTTYRFTNAGGTFAWVAPAPLDGTY
NGGDIVIAGGAVTGDLTSQPGYQPYKPLVAGIPFDPTNPLSYTDQVPTTV
YDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQAMQVNGGASQTLNFD
TAGNLLNQPPTAQVTFANPGGNAAPADPLEITVSYNGVTQYGSDFAPKVV
QNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVG
NNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQR
TYQANAQTIKTQDEVMQVLMNMR
>BP1377 flgF, flagellar basal-body rod protein FlgF
MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGT
SLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYT
RAGALQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGA
GDPPNNILNLGRLKMVNPPPQQLVHGDDGVFRMPPQPGGQPAAPLPADPS
QRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREADKNAERANGIL
AAAS
>BP1378 flgG, flagellar basal-body rod protein FlgG
MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLR
QPGAQVGDANQLPSGLQLGMGVQVAATQRVFSQGNMNNTGGEMDIAIQGR
GFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLT
IGKDGTVSVTQPGAAGTNVQIGQLQVATFINPTGLQSVGENLYLETDSSG
PANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRAYEMNSKAVKT
SDEMLARLTQL
>BP1379 flgH, flagellar L-ring protein precursor
MLKTVLRLPVCAALLALAAGCAMIPPEPVVICPLTAPPPSPPQPSARPNG
SIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSA
TLGVAAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVI
GVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADA
RIEYRSKGVMDEVQTMGWLQRFFLIASPF
>BP1380 flgI, flagellar P-ring protein precursor
MTFPTSLSVLLIPLARAVLALELLGAGAAHAERLKDLASIQGVRGNQLIG
YGLVVGLDGSGDQVRQTLFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVM
VTATLPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYVIAQ
GNLLVGGAGASAGGSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLE
MNNTDFGTTQNAATAINRQFGAGTAMALDGRVIQVRGPLDPSMMPAFMSQ
VENLQVARAPATAKVIINARTGSVVMNRTVMIEEAAVAHGNLSVIINRQN
QVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANLADVVKALNAL
GATPQDLLAILQAMKTAGALRADLEII
>BP1381 flgJ, peptidoglycan hydrolase
MSFVSYTSRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQFEALF
LQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPDIGLAQALL
GQMQQGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAP
RREVNALLDVLRSNRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSG
VPARLILGQAALESGWGRRELRHEDGSTSYNLFGIKAGASWKGKVVNVMT
TEYVDGVAQKLVQSFRAYSSYEESFSDYARLIGNSPRYEAAVTQAGNEIE
AARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL
>BP1382 flgK, flagellar hook-associated protein 1
MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQ
GFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGD
RTVGITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQEL
ENQRNGLNTQISTTVEQANSYLERINDLNKKIVIARGKDGHAPNDLLDQR
DQAVSELNQLTGIRFYEQGDAFNITLQSGQTLLSGTTVYPLQAVPSASDP
KRLTVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQLG
QLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNSGNTSTGEWQS
AYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLT
LTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNG
LKLAELQTAKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQ
QATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVASTVFDTLLGLR
>BP1383 flgL, flagellar hook-associated protein 3
MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAI
NVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNG
TMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDA
ATGKVTYNGDLGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGA
GNTGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQYSVLSDPPVV
PPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQ
GDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYSVTSTPPDPSL
PANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDL
IGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNEL
EALGNTGAQKVLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRI
QGNSLFSMGR
>BP1371 flgM, negative regulator of flagellin synthesis
MKIQSSTSHPVGPNAVGARAEHAVAQAYGSGAQAGSGSAQVALSPASRQL
LAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK
>BP1366 flhB, flagellar biosynthetic protein FlhB
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSG
SMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGML
AVVAVLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKAL
AKAALVGGVAVWVIWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGS
LLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDPHVKGRIRQQQRA
MARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAAR
IRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQL
RSWRPGLGREPQAPTALVVPAELDPHSPTAAQGA
>BP1410 fliD, flagellar hook-associated protein 2
MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQ
AAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAAGAVPGQYTVNIDK
LATAQNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVK
AINGTDGLDVRATVISDGNGKHYLMLNNKTEGTETAVTRITVSGNQEVAD
ILDFDAANAGASNLTVQLAAQKAELTINGIPVVSDTNTVETAIDGLTLTL
TKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQ
SALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTDPKTGSLKTDT
EKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGLE
ETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFA
ALSGTKK
>BP1404 fliE, flagellar hook-basal body complex protein FliE
MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQRSIRS
VSQAQNAASDQAKAFELGAPGISLNDVMIDLQKASLGFQTSVQVRNRLVA
AYKEISSMAV
>BP1403 fliF, flagellar M-ring protein FliF
MNQQATLSASLMARFPVLEKLRALPKPVLLGAAAALIAVVAAVAMWSREP
DYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQ
LASQGLPRGGSVGFELLDNTRFGASQFAEQINYQRGLEGELARSIEAMHT
VQHARVHLAMPRQSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVA
SSVPELTAENVSIVDQNGRLLSAPLGEGRGMDADQLRFVREMEQRTVERI
LTILNPLVGPGNVHAQASAEIDFARREETSEVYRPNQEPGQAAVRSQQTS
DSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQQQQRAQQQ
AAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAV
VVNYLPNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFND
TPVAVPLWRDPELIAMIKTALGWLFGLILAFWLYRKIRPVVTDYFYPQVD
PEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVAMVLR
SWMSKDEK
>BP1402 fliG, flagellar motor switch protein FliG
MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAMASLKQ
VTRGDVAVVLEEFRQEADQFMAVTLGSDDYIRTVLTKALGSDRAAGLIED
ILEAGEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVL
AMLSERMRNDVMLRIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGV
RTAAEILNMMNSSQEEAVVESLRERDSDLAQKIIDEMFVFDNLLDVEDRA
IQLILKEIDNDTLMVALKGAGDELRNKFLRNMSSRAAEMLREDLEAQGPI
RMSKVEGEQKKILQIARRLAESGQIVLGTQGDDAYV
>BP1401 fliH, flagellar assembly protein FliH
MSEALAREPVALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPEPAPDP
EELLREWRATAERAGHAAGHQAGQEQGQREGYAAGHAQGLAAGRAEGHAE
GLAQGREDARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVL
RTTLAEHPEAMVAAVREVLQINPATGAAMRLWVHPDDLELVRTHLADELN
EANWRLQADESITRGGCRTETAYGDVDATLQTRWRRVAASLGRSAAWEET
A
>BP1400 fliI, flagellum-specific ATP synthase FliI
MPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHTTGLRLPVGAA
CRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQ
RPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGA
EQAPLTALPINPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVG
KSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLARSVVVAA
PADVSPLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALA
IGEPPATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSITAFYTVLAEGD
DQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTE
QFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQ
QNIGDSVDYGTAIDQLQRSLETREAYA
>BP1399 fliJ, flagellar protein FliJ
MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDYRQDYL
QRMQTAMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLN
WQQQKRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF
>BP1395 fliL, flagellar protein FliL
MPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRMQPPVA
VPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNADSERI
LHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEM
AHAITEAVKRPFSPLPDGQYVTDALFTAFVVQ
>BP1394 fliM, flagellar motor switch protein FliM
MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPERVVRR
RMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVP
SNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTT
EQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVV
VSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQ
LQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPETVTAHVDGV
PLMECGYGVFNGRYALRVQNLINYDDTDSNEAPDHD
>BP1393 fliN, flagellar motor switch protein FliN
MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQDDWAD
ALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRTRL
TIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLT
DIITPSERINRLNSRR
>BP1392 fliO, flagellar protein FliO
MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVGGMSLG
PRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPSPAAAGTFAAKL
GQALQRGHRVDRP
>BP1391 fliP, flagellar biosynthetic protein FliP
MAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSL
SFLPAALLMMTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTM
SPVFDKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFA
NLANLPAMEDPSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVA
SVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSFYQ
>BP1390 fliQ, flagellar biosynthetic protein FliQ
MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQINEMTLS
FIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS
>BP1389 fliR, flagellar biosynthetic protein FliR
MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFML
TIAVAPAIGPMPAVPPSSYAGLFLLSQQVLIGIALGLSMRVVFAAVQTAG
EFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGA
LVRSFDTLPVAVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINL
AMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPFLERLFEQGLN
TMNNVANGLAGK
>BP1409 fliS, flagellar protein FliS
MTYAARRPTGSYSVKSYSDIGLETQVMSATPERLITLLYAGARAAIAQAR
LHLEAGRIVERGQAIGKAIRIVDEGLKLGLNQNAGGEVAANLARLYDYIT
RTLLTANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA
>BP1024 motA, chemotaxis protein MotA
MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAFMAGNS
RKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESH
IEDPLSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEE
IETYRHEREVPTHALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGD
LISKAMVGTFLGVLLAYGFVAPMAARIERRTSESVKVLECIKVTLLASMN
GYPPQLAVEFGRKVLFSAVRPSFGELEEHVRQAKSAATGRA
>BP1025 motB, chemotaxis protein MotB
MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMWLISIV
PREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRA
EGNRVEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMT
TEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAG
HTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASS
MSLVKDDPFAAVNRRISLVVLNASTQRRIENENAAAADVNARDAQGVGAA
LAGQLAASGSDGGAR
>BP1385 tar, methyl-accepting chemotaxis protein II
MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDSVSVQQ
GSLLKDAYAQMLRATIRADIAAVQRRGDAAGTLENERTVKQLMGEAKARI
EAFRKVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLK
NVKAGQASAAFAARLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLL
IVGVIAGSYLYMTRAVVRPLQRASQQFERMAAGDLSARIEGNSRNEIGAL
LTALRHMQESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASL
EETAASMEQLASTVKQNADNARQANQLAASASDVAESGGSAVSEVVSTMD
GISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
VRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRV
TDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQ
EQAQRLAEAVSVFKINTGEVIEVPAHQLSGYAAPLVAQS
>BP1384 tsr, methyl-accepting chemotaxis protein I
MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNNAYSNQ
AVPAYDAYVMLLRARLNIVSSMMDLQEGRLKESADTLAHAQRQAGEARER
FEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLN
PSAQRLNTAFDTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLA
LALCAGCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDVRNSNEIGQLF
AGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSHTEEQAASLE
ETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVTTMQD
ISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEV
RSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERVGATMQEIVASVKRVT
DIMGEISAASEEQSSGIEQVNRAVSQMDEATQQNAALVEEAAAAAGSLQE
QAQRLAEAVSVFRINAGEVIDVSARQLAQQRQAPRVAAAPASAAAPEAPP
EPAPRLARPAARADVAAEAASVRRPARRPAATEPAARTTAAPSRRRPPAD
NDWESF
>BP1030 tsr, methyl-accepting chemotaxis protein I
MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQGVKQTQ
DVADAMDRVVNSYKDALNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAA
GLLQRAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHP
LAAALEKGDMAGYQSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVA
ETRYRFVLAAVAAGGVLAALLVFSTYLFLRRRVLQPLREVGQHFDKIAAG
DLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREIS
AGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASD
VAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVE
AARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQV
ERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQ
QNAALVEEAAAAAGSLQEQAQRLAEAVAVFKINTGEVIEVPAHQLGSRQA
PGAREAALARDDALALGH