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# Chlamydophila pneumoniae J138, J138

>gid:459853  CPj0068  CT360 hypothetical protein
MIKKFFIYSLIFSCSFSAPLKGICNEDVSSQSRIEEDPEVLITQLNELIE
TPIEEGKEIRNELQAISDGQKSSEEIEESCGTSDSEGLSEKTDKESSNEY
VLDFFDSMVQRLEGISKMCQSGQVAQIIDCFNREFDIRNRELELKNRELE
LREKDLEFKKSILDWNKEKVSRELAFQREQDIKQTLMLLKK
>gid:460203  CPj0408  CT102 hypothetical protein
MFFNLFSLVFKLSDELALAETIQEPISVHEMFPGSMKLEMFKMLGSLILL
LTIFGFGVWAFKKFVRSRSHGFGGSSQIKILERRSLTPKTSIYLIRVVNK
TLVIAETPEKITLLTEFPPDTDINHLLQENNKQSSSSATSDFLSKAIQKI
QKKQQTNQD
>gid:460562  CPj0751  CT651 hypothetical protein
MFRCILFGIFLLTCFSSGGVLYYLFCSHDFSIGPKEKSRSVWIEEEKEFT
DSVLHHLPSQHQHLHILCFQGFLLQKQQKFSQAEKIFSKVYDEAQDGPFL
FKEEILGSRLINSFFLEKTDVMETILCLLNQRCPNSPYYHLFKALVCYKQ
KLYREVIEQLAYWQEEKTRALAPLLNISIEQLLTDFLLDYISAHSLIEQK
MFPEGRVILNRNINRLLKHECEWNAKTYDRIAILLSRSYFLELVESKSAD
IYFDYYEMVLFYLKKIYILEQCPYAELLPEEELVSLIMEHVFILPKDKLY
PLIQLLEMWQKHYVHPNSSLVVQILVDRFSTHMEGAIRFCEALVSFSGLE
ELHQQIITTFEELLSNKVQQIKTEEAKQCVALLHILDPSISISEKLALSS
DTLQNIVSGDDEQHTKLRNYLDLWEAIQSYDIDRQQLVHHLVYGAKDLWK
KGGNDEKALNLLQLVLRFTSYDIECESVVFLFIKQAYKQALSSHAIARLL
KLEKFISEANIPSIVISEAEKANFLADAEYLFAHEDYDKCYLYSMWLTKV
APSPQSYRLAGLCLMENKRYDEALEFLCMLSPNNSINDYKTQKALAFCQK
HQSKDRVAS
>gid:460630  CPj0818  Omp
MKRQKRKQSITLIEMMVVITLIGIIGGALAFNMRGSIHKGKVFQSEQNCA
KVYDILMMEYATGGSSLKEIIAHKETVVEEASWCKEGRKLLKDAWGEDLI
VQLNDKGDDLVIFSKRVQSSNKK
>gid:460672  CPj0859  CT718 hypothetical protein
MTTPQSPGSLSQSHLPHPHDPWDTEPTSLPEDPNDKASQELHSLVHLFRK
LSIHLLSEVEKTVQQLKPDLLELALLICEKFLYKKLENPQELALLLSTAL
QRHTTLRSLTPIKVFLHPEDLKTLTDWISTHELPMIKHAEFFPDTSCRRS
GFKIETPNGILRQEISEELDHLLSVLTA
>gid:460820  CPj1004  CT847 hypothetical protein
MSIQPVSNTTTKADKVIPDSTKVISDSITINKQSAFYFCISVMLRLSEST
TEYGKSILAVLEDNTIVQQQRVKELINLPLLKVPDLQKKDGSDDEYKNQN
EIQAYQSSNQQISANRQMIQQELSSAQQRAQANQKSVNSTTIESMQILQA
TSSMLSTLKELTIKANLTNSPSD
>gid:460821  CPj1005  CT848 hypothetical protein
MWIIDPLSAKKPLQAAINVPGTPITGGPNTATADDIIAKFSKDSNPLIVT
VYYVYQSVLVAQDNLSIIAQELQANSSAQTYLNNQEALYQYVSIPKNKLN
DNSSSYLQNIQSDNQAIGASRQAIQNQISSLGNAAQVISSNLNTNNNIIQ
QSLQVGQALIQTFSQIVSLIANI
>gid:460835  CPj1019  CT860 hypothetical protein
MTVSYQSISTPPPEGEFDIFVDGNATEEAVVAAEVQVALPAGEQYAMLRA
TSELCFGILTQSECALTQALPPKEKPLQEEQFLVKNGILMRSTSLPNLKP
GQSQQTSLASHRNPLAQQSTSSNSTGKASTETTSSSFPFFSCKAPEGDSS
VDKTFTVSVQTPKAQEQQEASASQSQAQFHVRSYSSSTIKEHSAKEKVSQ
STKSAETQKHTQTKSDATLSPMSLYSTLHKEVPQALSSTKSQQKDEEHRD
QRQQEGYEQEQEQEEGKKKTPWCTVESLQQTSSSNQVYESYTPIIPDPIV
EFALSESQLSVLAGKRVTNLDVLRICTELMKLMLKSRANDTMTRLEEREL
MEREAHELAASYSRQAKYARWLGIATATLGILGAIAPMVGEISGDSILGF
VQRISGRFKDATAKTFFKGIGKVFTSLSQLTEAASKVHELSESAVRAVAE
YRKEVFRMRQDEVTRTIEEVKDNWKSMDNFLLNILQTEHDAARSLYQ
>gid:460883  CPj1066  hypothetical protein
MSLNKEIGMTVLFYAFLFIFLFLCVILCGLILVQESKSMGLGSSFGVDSG
DSVFGVSTPDILKKVTSWCAVAFCIGCLLLSFSTNLLGKKLDAKEFLLPA
AEESDTQASSESVEADES
>gid:460157  flhA  flagellar secretion protein
MSGKKDGVRGMIFVPLSILVLIFLPLPQILLDFGLCISFALSLLTVCWVF
TLNSSNSAKLFPPFFLYLCLLRLGLNLASTRWIVSSGTASSLIVSLGSFF
SLGSLWAATFACLLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALD
SDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGDAIISCILLLV
NVVSVTCLYYTSGYALEQMWFTVLGDALVSQVPALLTSCAAATLISKIDK
EESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLLWLA
YRKEEPASEDSCIERAFSYVEGACPKEQESQFYQVYRAASEEVFEDLGVR
LPVLTSLRIEERPWLRVFGQNVYLDEMTPEAVLPFLRNIAHEALNAEVVQ
KYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEA
VAVYQNSGDSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELI
NSSYSKSNPVMQENVIRRVDSLLERSVFKDFRAIVTSCETRFEMKKMLDP
HFPDLLVLSHDELPKEIPISFLGIVSDEVLVP
>gid:460673  fliF  flagellar M-ring protein
MFFQNLAKKLTALGISPLGCLLIGGVVSCAILFGRSSNPSLAPTQVKTEK
TSGNWLKLTQMGNPKLIESLTKKEQLEKDLTSFHPIASAKVAIALSTEDD
VMSPLHLSVILTLRKEESLTPSLLFSITDYLCSSLPGLKREHISLSDNLG
NLYIPESITVNSLFIHTLENYLGKIFPKEHFALAYHAKAEKPTLQLTLNE
NYIAHLTKEESEKIVAHTKHYLYQNYDDSYDIVIETLPFARLQNKKSFPA
KVLIGSMILVISLMIVALASFYLARHAYERVSPEPRKIKRGINISKLLEI
IQKESPEKIALILSYLDPKKAEALLNRLPEDLKHQVLKYKL
>gid:460671  fliI  flagellum-specific ATP synthase
MNHLNKEKLHIHNWQPYRACGLLSKVSGNLIEVDGLSACLGELCKISSTK
DPNLLAEVIGFHNHTTLLMSLSPLHSVALGTEVLPLRRPPSLHLSDHLLG
RVLDAFGNPIDKKEDLPKTHRKPLLSLPPSPMMRQPIDQIFPTGIKAIDA
FLTLGKGQRIGVFSEPGSGKSSLLSAIALGSKSTINVIALIGERRREVRE
HIEKHSNALKQQRTIIIAAPAHETAPTKVIAGRAAMTIAEYFREQGHEVL
FIMDSLSRWIAALQEVALARGETLSAHQYAASVFHHVSEFTERAGNNDKG
SITALYAILYYPKHPDIFTDYLKSLLDGHFFLTSQGKALASPPIDILSSL
SRSAQALALPHHYAAAERLRSLLKVYNEALDIIHLGAYTPGQDEELDKAV
KLLPSIKAFLAQPLSSYCYLDNTLKQLEALADS
>gid:460511  fliN  flagellar motor switch domain/YscQ family
MAVAADSSASWLKSRNNFLSSLGKTEEQVAAPEFPKELCQHKIREKFRLE
DVQVSIKFRGSITAVEATKEFGVHLLIQPMVVQPWEVENLLFLTSEEDLQ
ELMVAVFDDASLASYFYEKDKLLGFHYYFVAEACKLFEELQWVPSLSAKV
GGDAIFTATSLQGSFQVVDISLRLDGKNVRCRLLLPEDTFQSCQKFFSGL
HDESDLHNIDQTQQISLSVEVGYSQLTQEEWHQVVPGSFIMLDSCLYDPE
TEESGALLTVQKHQFFGGRFLTPSSGEFKITSYPNLTHEDPPLPENPQAS
AAPLPGYSRLVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGA
KVGRGEIIALGDVLGIRVLEV
>gid:460627  gspD  general secretion protein D
MVFFRNSLLHLVALSGMLCCSSGVALTIAEKMASLEHSGRGADDYEGMAS
FNANMREYSLQLSKLYEEARKLRASGTEDEALWKDLIRRIGEVRGYLREI
EELWAAEIREKGGNLEDYALWNHPETTIYNLVTDYGTEDSIYLIPQEIGA
IKIATLSKFVVPKESFEDCLTQILSRLGIGVRQVNSWIKELYMMRKEGCS
VAGVFSSRKDLEALPETAYIGFVLNSNVDAHTNQHVLKKFINPETTHVDV
IAGRVWIFGSAGEVGELLKIYNFVQSESIRQEYRVIPLTKIDPGEMISIL
NAAFREDLTKDVSEESLGLRVVPLQYQGRSLFLSAIAALVQQALTLIREL
EEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDVFSGENKASVGAADGC
GSQLNASIQIDTTVSSSAKDGSVKYGNFIADSKTGTLIMVVEKEVLPRIQ
MLLKKLDVPKKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSV
SWAGGTGILEFLFKGSTGSSIVPGYDLAYQFLMAQEDVRINASPSVVTMN
QTPARIAVVDEMSIAVSSDKDKAQYNRAQYGIMIKMLPVINVGEEDGKSY
ITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGETVIIGGLRCKQMS
DSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQERK
EEALLSSRPGEREEYYQALAASEAAARAAHKKLEMFPASGVSLSQVERQE
YDGC
>gid:460628  gspE  genral secretion protein E
MAASILSQELLDILPYTFLKKHCLLPIEESSEAITIAHATATSVIAQDEV
KLLIKKPVRFVLKEESEILQRLQQLYSNREGNVSDMLLTMKEEDGTTISE
EEDLLETTDTIPVVRLLNWILKEAIEERASDIHFEPCEDSMRIRYRIDGV
LHDRHSPPSHLRSALTTRLKVLAKMDIAEHRLPQDGRIKIHIGGQEVDMR
VSTVPVIYGERVVLRILDKRNVILDIAGLHMPKGTEILFKDTITAPEGIL
LVTGPTGSGKTTTLYSVLQELKGPLTNIMTIEDPPEYKLPGIAQIAVKPK
IGLTFARGLRHLLRQDPDILMVGEIRDQETAEIAIQAALTGHLVVSTLHT
NDAISAIPRLLDMGIESYLLSATLVGVVAQRLVRTICPYCKVAYTPENQE
KSFLASLGKDTEMPLYRGQGCVHCFRSGYKGRQGIYEFLRPNTLFRSEVA
SNRPYHILRETAEQNGFLPILEHGIALAVSGETTLAEVLRVTKRCD
>gid:460629  gspF  general secretion protein F
MPRYRYTYLDPKERRKRGYLEALHIQEAREKLAQENIQVLDIREVALRRM
SIKSTELIVFTKQLLLLLRSGLPLYESLVSLRDQYHEQKMGLLLTSFMET
LRSGGSLSQAMAAHPNIFDHFYCSGVAAGESVGNLEGCLQNIIVVLEERA
QITKKMVGALSYPCVLLVFSFAVMLFFLLGVIPSLKETFENMEVKGLTKI
VFGVSDCLSAYRYLFLGFASALITVGILMRHRIPWKKILEKLLFALPGTK
KFVVKVAVNRFCSVASAILKGGGTLIEGLDLGCDAIPYDRLKTDMRDIVQ
AVIGGGSLSQELAQRSWVPKLAIGMIALGEESGDLADVLGYVAHIYNEDT
QKTLASITSWCQPVILIFLGGLIGVIMLAILIPLTSNIQTL
>gid:460261  pmp_16  polymorphic outer membrane protein E family
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFV
GNRHNSSQDIVLSNYKSIDNILLLWTSAGGAVSCNNFLLSNVEDHAFFSK
NLAIGTAGAIACQGACTITKNRGPLIFFSNRGLNNASTGGETRGGAIACN
GDFTISQNQGTFYFVNNSVNNWGGALSTNGHCRIQSNRAPLLFFNNTAPS
GGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAIKNNSGSVIFN
NNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQ
FLTIKNSGHVYFTNNQGNWGGALMLLQDSTCLLFAEQGNIAFQNNEVFLT
TFGRYNAIHCTPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANH
QGTILFSSAYIPEASDYENNFISSSKNTSELRNGVLSIEDRAGWQFYKFT
QKGGILKLGHAASIATTANSETPSTSVGSQVIINNLAINLPSILAKGKAP
TLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDSIDLSEPLQNI
HLLSLSDVTARHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNAS
IETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFHTMFSLLRSYN
RTGDSDIERPFLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETS
LHQKISLGFAQFFTRTKEIGSSNNVSAHNTVSSLYVELPWFQEAFATSTV
LAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSYLHLSP
FVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQGKWQSKFHVP
TEWTLELSYQPVLYQQNPQIGVTLLASGGSWDILGHNYVRNALGYKVHNQ
TALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF
>gid:460242  pmp_8  polymorphic outer membrane protein G family
MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKST
ADANGTNYVLSGNVYINDAGKGTALTGCCFTETTGDLTFTGKGYSFSFNT
VDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGAL
NLTDNGTILFSQNVSNEANNNGGAITAKTLSISGNTSSITFTSNSAKKLG
GAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSITQNSSLFFSG
NTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHG
LDLSAAGPTLFSNNRCGNTAAGKGGAIAIADSGSLSLSANQGDITFLGNT
LTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL
TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTL
ALKGNVELDVNGFTQTEGSTLLMQPGTKLKADTEAISLTKLVVDLSALEG
NKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAA
TAASDIYIDALLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTG
YNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQRGLWASGTAN
FFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFI
VENTSHNYLASLYLQHRAFLGGLPMPSFGSITDMLKDIPLILNAQLSYSY
TKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL
KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFE
ISLAYIGDVYRKNPRSRTSLMVSGASWTSLCKNLARQAFLASAGSHLTLS
PHVELSGEAAYELRGSAHIYNVDCGLRYSF
>gid:460509  yscC  YopC/Gen secretion protein D
MKTVILNIGRKILQGIKKKKKKIGILSGLFFLDLVLLGVSSQRPTETSAN
VKHNLRDEKLAACPKNSAASLSAKKSHTKKTTPGSIPSKVFSKFDATQDK
TFQKTSGSAFPAKPTTLKELEERKKPRPERRTTADVKRSPRFLPTQEVEE
PVPAASKEQLDSIQVWEEKQNYARRAVNAINLSIKKQLEEQTSTVTEKDV
QPKTQATPHASKKNVASPSTSMPGIEKAATTVAVPQDKSEEEKVKERLTK
RELTCEDLKDNGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFNVTI
VSHDPTSVDDLSTILLQVLKMHDLKVVEQGNNVLIYRNPHLSKLSTVVTD
SSLKETCEAVVVTRVFRLYSVSPSAAVNIIQPLLSHDAIVSASEATRHVI
ISDIAGNVDKVSDLLAALDCPGTSVDMTEYEVKYANPAALVSYCQDVLGT
LAEDDAFQMFIQPGTNKIFVVSSPRLANKAEQLLKSLDVPEMAHTLDDPA
STALALGGTGTTSPKSLRFFMYKLKYQNGEVIANALQDIGYNLYVTTAMD
EDFINTLNSIQWLEVNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVL
ILDTSLEKSWDFGVQWVALGDEQSKVAYASGLLNNTGIATPTKATVPPGT
PNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGNVLSHKGKSFLTLGGLL
SALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQETGTVTQ
NIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLTPVTDKTYA
ATRLQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQ
KRNIMMFIKPKVISSFEEGTRVTNKEGYRYNWEADEGSMQVAPRHAPECQ
GPPSLQAESDFKIIEIEAQ
>gid:460638  yscL  Yop translocation L
MKFFSLIFKDDDVSPNKKVLSPEAFSAFLDAKELLEKTKADSEAYVAETE
QKCAQIRQEAKDQGFKEGSESWSKQIAFLEEETKNLRIRVREALVPLAIA
SVRKIIGKELELHPETIVSIISQALKELTQNKHIIISVNPKDLPLVEKSR
PELKNIVEYADSLILTAKPDVTPGGCIIETEAGIINAQLDVQLDALEKAF
STILKAKNPVDEPSETSSSTDSSSLSNDQDKKE
>gid:460514  yscN  YopN
MDQLTTDFDTLMSQLGDVNLTTVVGRITEVVGMLIKAVVPNVRVGEVCLV
KRNGMEPLVTEVVGFTQSFAFLSPLGELSGVSPSSEVIPTGLPLHIRAGN
GLLGRVLNGLGEPIDVETKGPLQNVDQTFPIFRAPPDPLHRAKLRQILST
GVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG
ERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPRLLE
RSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRR
GSDREIDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>gid:460637  yscR  Yop translocation R
MRSIFRFSLCFFTLSVSCCFADASLYENSCPSRCQPTPPPSNSNPLNVVQ
QPVAASSVPSYMPPLNADDVLPRDHLSDGSFSDTYPDITTQAIILIFLAL
SPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFP
TGVAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNT
PKAQIQSFYKISQKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVL
IYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLIVMVDGWTLLLQG
LMISFK
>gid:460118  yscU  Yop translocation protein U
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAVTFIVSMFTAFSLSTFFFK
HLGGFLVSMLSQAPTRHDPVITLFYLKNCLMLILTASLPLLGAVAVVGVI
VGFLIVGPTFSTEVFKPDIKKFNPIENIKQKFKIKTLIELIKSILKIFGA
ALILYITLKSKVSLIIETAGVSPIITAQIFKEIFYKAVTSIGIFFLIVAI
LDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDS
SSQVKHASTVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRILDEAE
KYGIPIMRNVPLAHQLLDEGKELKFIPESTYEAIGEILLYITSLNAQNPN
NKNTNQPDHL