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# Chlamydia muridarum Nigg, Nigg

>TC0330 protein export protein, FHIPEP family
MNHIRGSSWKIVTIPICILFTLVIPLPRWIIDFGVCANLACSLSIIFWVF
SLRSSASARIFPSLLLYLCLLRLGLNLASTRWILASGWASPLIFALGSFF
SLGSIPVALTVCLLLFFINFLVITKGAERIAEVRARFSLESLPGKQMSLD
ADISAGRIGSSRASVKKNSLLEESDYFSAMEGVFRFVKGDAIMSWVLLGV
NSLAALFLGRHVGVYNLWLTVLGDALVSQVPALLTSCSAATLIAKVGEKE
SLAQHLVEYYEQCRQSFLYIALILCGMAFIPGAPKALILGFSVLLLLGYK
SPYSEESLLFQKERIELLLPNKGNENPVSLYRAARHQIYQELGVIFPEES
VVRYVNNVSPRLVFSGQEISLTELSCSAMLKAMRKLAPETIGERFIARLI
EEFQEQGGLSIEEIIPLKISENSLVFLLRALVKEQVSLHLFPKILEAIDL
FGSQAKSSLELVESVRNYLGKQIGLSLWNRKDVLEVITVDSLVEQFVRDS
QAKVFVDLNEKVVSQVKDLLREGEGNFRAIVTGSETRKELKRIVDPYFPD
LLVLAHSELPEEMPITLLGAVSDEVLLS
>TC0891 conserved hypothetical protein
MKFTVAVFGEAEKGSFEAAYLCSSLTDLHTNLGHGRDSPSGIPLAVRAIM
QGYDILFFRVKEEGFYVDSYFFGLHFLNTQSSLTNIIALALPGVGDYNVI
EASLALCRKLKSILLFSDQDLYDFLTFQDT
>TC0791 conserved hypothetical protein
MYFTRDPVIETVITSREGYKLSIRNSKHLSQDPFVVEAVEVIRLGGTSFF
RNCDHSKPFLVPAADYEVMEVRDAKINLKAVGLDRGVKIVSGREALLKMP
RVAPVASVQEESSSSLEEGIIEDPVVATPSPASAAPMSKKEKRKEFKNEK
WKEKKKQGRRRNSKEIADAVGSSQDMIDTITEECLQESSPEERDPCERRF
ALIPPPTRLISEGPEEPKESQPVTAVDLNESLNALVSESCDVIESILADE
DTVIFTKESEKSSNETQELSSHSLEEASVHDRISSEE
>TC0378 conserved hypothetical protein
MLRLFQHILCFLEEDPSLVEIPQELSFVNEVFSDSMHWELGKMFASLILL
LGIFGLGCWLFRRFLRSRGHIPSSNSSIKVLDRRVLPSKTSIYVIKVANK
TIVIAERGEHVTLLSEFPPNTDLNELMQQDQKKTPTPRREMLSGFLNQFK
DKK
>TC0237 conserved hypothetical protein
MSAPIPPAKDSKYVSALPPLEPLRTPPMAELLFGIYSLLLEAVEIRQQTV
LTQSQQLNDNTNIQQQLNQETNRIKYAVVNAGAKEDEITRVQNQNQNYSA
QRSNIQDQLVTARQNGQIILSHASTNINIMQQIAQMNSSFIKTLNSVGST
VNQLNKPLS
>TC0858 conserved hypothetical protein
MGKTKKRKQSITLIEMMVVITLIGIISGALAFNMRGSLQKGKVFQTEQNC
ARVYDVLMMEYASGNLSLKEVIANKETLLDNSAWCKEGKKLLKDAWGEDL
IVKMNDRGDDIVVLSKKLKSEQRG
>TC0092 conserved hypothetical protein
MLPHFLKNKITSTKSLGSLLAAILIGFIVLYKPSSPQSTPTTVSTEKQPS
NWLKLTHLGNLQSMEIQAKKEQLENDLTMFDPILQATVALSQEEDAPAEI
SVILSLPHALTLSPSLVHSITDYLMRSVPGLTKEHITLSDQQGNLYSPLL
EQSDTLLVTSLERSLQTILPQKHFTINYLPLANEGHLQLLIDEDYLNTLS
KSSRTKLLSHMQEILSVFPEKHTSVDIVPFLKPTVQKHSPIPSIVLSIGI
VLLGLSILGAATFYLAFHTYDHVSQQKEKIQSINIPKLIEMMNRESPEKV
ALILSYLDSTKAEELLNKLPEEMRSAVLKLKA
>TC0084 conserved hypothetical protein
MSIQPKSVSFTKNLVAPWAGEQVDSAAMYTSQAVFFFQQLDEKSKALKRA
LGLLEELDVEKFTPSLEETPTIIQPEITGRISYDDIEIIESLTPDIILAD
PDRASAQVFGEGLADSFDDWLTLSENGGLQDPTPVEQEIVTRYQTELNAL
RNKLKQSVLTPDEYARLYAIPQTFVKEIESIKDENNVRLIPKSKVTNFWQ
NIMLTYTSVTSLSEPVSDAMNTSIADYSLYIERATQAASLIREITNLIKD
IFNPIWDLSTQIITNAFSLNGAEFNSLEGGIIQSLLSFAGLFRQLMSRTS
TVDEIGDLYPQNVQNQDVIHTAIDEYVNSLTNLKVNDHVQLNGLLSLVYA
YGASTLVFTQKSISNSNQISLTEYSAALEKEIQYWVPRETANFKISDQAL
TTFKDKPSGTYNGVALFDFNGSAVNIFNPTFFFDVVSLMTTDPKKAMTRE
DYNRVIAASESSIRKINESIAAWEAAIAECNAKKVQMDPAGRNYFDAMVL
AKQTFVNTSPIQMVYASLMLDKYLPNQQYILETLGSQMTFSNKAARYLND
IIAHSVSFQTADVYYALGMYLRQMNVQAFPESISRAKNLLNKEIERCRAD
LFHCQRAIEEINKLSASVKADTELTSSQRSELLETLASYAFEFNNLYHNL
SNVYAMASVIQISGVDKPDEVDKAFTTTIGTKDLDTWIQQFTIFESAVIE
GGRGGVMPGGERQVLQSLESKQQDYTSFNQNQQLALQMESAAIQQEWTMV
AAALALMNQIFAKLIRRFK
>TC0090 virulence ATPase, putative
MIHLQQETLLIHQWRPYRECGILSRISGDLLEAQGLSACLGELCQISLPR
SSPILAEVIGIHNQTTLLLALTPIYSLSLGAEVVPLRRPASLPLSHHLLG
RVIDGFGNPLDGNPPLPKSHLSPLFSPPPSPMSRTPIQEIFPTGIRAIDA
LLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQTINVIALIGERGREVRD
YVNQHKEGLAAQRTIIVVSTAHETAASKVIAGRAAITIAEYFRDQGARVL
FIMDSLSRWIESLQEVALARGETLSTHHYAASVFHHVSEFLERAGNNDKG
SITSFYAMLHYANHPDIFNDYVKSLLDGHFFLSPVEKSFFSPPINLLTSL
SRSACQLALPHHYAAAQELLSLLKAYHEAIDIIQLGAYVSGQDAKLDRAI
RLLPSLREFLSQPLSNYSDIHDTIEQLCLLLKHE
>TC0910 conserved hypothetical protein
MSSMNTFNRINSISKDYMKIEDIFLSAPKNKTFFINHVMQFQKTEIERNA
IHKVLSLLDNDVQAQYEQLVTSLSSNTLATTAQPTKDSSAITYDPPSSNP
LYNAAKQAWAHNVLADFLNVVTEAKAKAATISQNETDLKALTNLSSVLTA
LVNKAKDGELSQENFETFYLLPDQIFSAIQSFPFEGNQKVLFSNQLLAAF
GEDGSIEQIFADIRIEGLQDVLNIVQSKLSPEEFESFQELQTVIDTLREY
VEPFDAEGFNTILQVSEALSVAIIKTSLPSNEKIELCRDIADFYKDQVLS
IQHLDTVLNETIYINARHNSLFAEIASLVAFIMGSFAPVGLNATSIEVTN
ASIAGALQAVRAIDARFHELSPDQQQLVNETVAKLNDFHGGEYIGAVWAY
FIAATTIASKNSVSPDEIKQVLTAQANTIASSFSLTQTLKTTINNIVAKN
GQFETVVDGVDRQYTIFSSDSNNQAVLNPILLNFGSIGFLPNITEAANTH
SETSARAFFRFKALAQTENAKLDATLQGSEDFLKKINQLRKDLFSYQLLA
QSHEIRSLPLPAAVASVLIDRYMPKEIDYLTQMKSDLYYSNLGSSVGNAM
IEAISQFVNGSTYFNFASFAGQQPMTGMHTDTFPGSQETAAAKLALEKQQ
TKLFIQYTNQALAVVQQQLARVKNDPVITNEQRLRILDALNSYADNLNSI
NGSLVLLQVYLNPLSVGVRDGNQGGGDTGKDPEGTFHVFGGQEQWQARLE
TLEDALVSGLPSNIINGGLFPVQATVQADQQAFADMGQNYQLEMQMHMTA
MQQEWTVVATSLQILNQIYLGLSRKFAG
>TC0861 gspD, general secretion pathway protein D
MKNVLRYGFIGAFCFGSLDIPVFSITVAEKLASIEGKTEAQAPLAHISSF
NSELKEANALLKSLYDEALSLRSLGETSQEVWNDLRDRLISAKQRVRALE
DLWSAEVSEKGGDPEDYALWNHPETTIYNLVSDYGDEQSIYLIPQNVGAM
RITAMSKLVVPKEGFEECLSLLLARLGIGVRQVSPWIKELYLTSKEETGV
VGIFGARQDLDVLPSTAHIAFVLSSKNLDARSDVQALRKFANSDTMLIDF
IGGKIWLFGVVHEITELLKIYEFLQSDNIRQEHRIVSLSKIDPFEMLAIL
KAAFREDLAKEGEDSAGVGLKVVPLQNHGRSLFLSGALPIVQKAIDLIRE
LEEGIENPTDKTVFWYNVKHSDPQELAALLSQVHDIFSSGSGIAGSQDTS
VSANKSGAASNGLAVQIDTSIGGTSKEGSTKYGSFIADSKTGTLIMVIEK
EALPKIKMLLKKLDVPKKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCK
QGTQAVSWANGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINASPSV
VTMNQTPARIAIVEEMSIAVSSEKDKAQYNRAQYGIMIKILPVINIGEED
GKSFITLETDITFDSTGKNQADRPDVTRRNITNKVRIQDGETVIIGGLRC
NQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMFITPKILDNPVEE
EEKLECAFLASRPGENEDFLRAVVSGQQAAKQAMEKKESIAWREETHSLR
EGVEYDGRE
>TC0860 gspE, general secretion pathway protein E
MAENKCSMQDLLDRLPYSFLKKNYLLPIDDLGDKIVLARHLKKTPLEALD
EVRLIMQKPLTIVSKEETEIIHGLQKLYSDKEGKASEMLLSMQDGEAQES
ESDTTELLESQEDSAPVVRLLNLILKEAIEERASDIHFEPVEDLLRIRYR
IDGVLHDRHAPPNHLRTALITRIKVLAKLDIAEHRLPQDGRIKLQLGGQE
IDMRVSTVPVIHGERVVLRILDKRNVILDIRGLCMLPKMEASFRKAISVP
EGILLVTGPTGSGKTTTLYSVLQHLSGPFTNIMTIEDPPEYKLPGIAQIA
VKPKIGLTFSRGLRHLLRQDPDVLMVGEIRDQETAEIAIQAALTGHLVVT
TLHTNDAVSAIPRLLDMGVESYLLSATMIGAVAQRLVRRICKHCKEICEA
DVQERALLKALGKDPYAPLYKGRGCSQCFRSGYKGRQGIYEFVDITTTLR
SEIALGKPYHVLRGVAEQEGYRPLLEHGVELALAGETTLSEVLRVAKRSE
>TC0859 gspF, general secretion pathway protein F
MARFLCTYLDQKEKKRRSFVEAFHQQEARELLMSQGARILDIRKVRERNY
RVPTSELVIFTKQLSLLLRSGVSLYDSLASLRDQYQGRALAGILTSLMEA
LRSGGVFSEALAKYPTIFDSFYQNSVRSGESVGNLEGALVNITKVLEEKE
KLSKNISAALSYPAILLVFSCAVIVFFLVGVIPSLKESFEDIETTGLTKI
VFSCSEWFCKYQFFLLIGGVIGGGAFRTIWKKQIGRKTIEGLVKNIPILR
NFIIKIGFCRFCSVASAVLQGGGNLIEALKLGCGAIPQDFLREELQTVIQ
AVIRGGSLSRELSRYSWTPKLVTGMVALGEESGDLSVVFAHIAQIYNEDI
QRVLAWLTAWCQPIVLVLLGGFIGLIMLSILLPLTSGIQTF
>TC0045 sctC, type III secretion protein SctC
MNKNSLTCQDLKEVGYTVNFEDISILELLQFVSKISGTNFVFDSNDLQFN
VTIVSHDPTSVDDLATILLQVLKMHDLKVMEQGNNVLIYRNPKLSQLSTV
VTDGSAKDTSEAVVVTRVFRLYSVSPSAAVEIIQPLLSHDAIISASESTR
HIIVSDIAGNIEKVRELIQALDSPGASIDMSEYEVQFANPAALVSYCQDV
LGAMTEEEGFQIFIQPGTNKIFVISSPRLTTKAIQLLQSLDIPEMAHTLD
DVTSPASALGSSGSANPKSMRFFMYKLKYQDGSAIAQAIQDIGYNLYVTT
AMDEDFINTLNTIQWLPINNSIVVIGNQANVDKVVSLLNGLDLPPKQVYI
EVLILETSLEKSWDFGVQWAALGDEQGKVAYASGLLSNTGVVDPLRNQTP
PVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGNVLSHNGKSYLTLG
GLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQETGS
VTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLTPVTDK
TFAATRLQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTID
QRQKRNIMIFIKPKVISSFEEGTVLSNSEGYRYNWESERGSLEVAPRHAP
ECQNAPKVQTESDFKMLEIEAE
>TC0850 sctL, type III secretion translocase sctL
MALPKDPHLVKRMKFFSLIFKDQEVVPNKKVLSPDAYTTVLNAQELLEKT
QEDCDAYTQHTHEECANLRAEAKNQGFQEGSEAWSKQLAFLITETQAMRD
QIKSSLVPLAIASVKKIIGKELETKPETVVSIISESLKELTQNKRIVIHI
NPQDLAIVEQHRPELKKLVEYADVLLLSPKASVSPGGCIIETETGIVNAQ
LDVQLAALEQAFSAALKQKQPTETFSTDQTQSKEG
>TC0040 sctN, type III secretion cytoplasmic ATPase SctN
MKELTTEFDTLMTELPEVQLTAVVGRIIEVVGMLIKAVVPDVRVGEVCLV
KRHGMEPLVTEVVGFTQNFVFLSPLGELSGVSPSSEVIATGLPLHIRAGA
GLLGRVLNGLGEPIDIETKGPLENVDSIYPIFKAPPDPLHREKLRTILST
GVRCIDGMLTVAKGQRIGIFAGAGVGKSSLLGMIARNAEEADINVIALIG
ERGREVREFIENDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYF
RDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLE
RAGASEKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYH
YPAIDVLASISRLLTAIVPEEQRRIIGRAREVLAKYKANEMLIRIGEYRR
GSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIFR
>TC0043 sctQ, type III secretion translocase SctQ
MAVAAEPSSNWLKARDELLSSLQKQDEGSFSLPVFPKQECEQKLKEKFHL
EEVELSFESQGLLSAAPAVQEYGEHVLLQPFLANPFESGEFYIVSSEEDL
QALIGTIFNDSSLASYFYEKDRLLGFHYYFVAEICKLLQEVSWIPSMAVK
VTGDVAFSARALEGDYHVVQVTCRLDSSYVRFSVLVPDTTAQSVYKFLEE
KNQTFDIQKIDMQTPVTLSVEVGFCQISEEDWHQVVPGSFILLDACLYDP
DTGDAGAFLSIQRTRFFGGRFLDKQSGDFKITGLQELQPEDAPEEHSEGG
PAAPLPSATKIVAEVARYTLSVGEFLKLEPGSILHFEGMHPTLGVDIILN
GAKVGRGNIIALQDVLGIRVLEV
>TC0851 sctR, type III secretion inner membrane protein SctR
MRLICRIFFFLCVLSAPQGFSNVCSDASCSKVQGSSSCRPCGATPQQEIQ
DSPGTPPPPFRCPSYRQPVEAQDLLASQEDLSSGAFSDTYPDLTTQAVII
LFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSI
YVMFPTGMAMYNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSF
LINNTPKPQIQSFYKISQKTFPPELRQQLTPSDFVVVIPAFIMGQIKNAF
EIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLVVMVDGWT
LLLEGLMISFK
>TC0852 sctS, type III secretion inner membrane protein SctS
MLMLATSFKSMLFEYSYEALLLILIISAPPIILASIVGIMVAIFQAATQI
QEQTFAFAIKLVVIFGTLMITGGWLCSMILRFAAQIFTNFYKWK
>TC0366 sctU, type III secretion inner membrane protein SctU
MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFMTFSLSSFFAE
HLGGFLVSIFRTAPQQHDPRLAVYYLKNCLMLILTVSLPLLGAVGFVGLL
IGFLVVGPTFSTEVFKPDLKKFNPIENLKQKFKLKTFIELLKSIFKISGA
ALILYIVLKNRVELVIETAGVPPLVTAQIFKEILYKAVTSIGMFFLVVAV
IDLVYQRHSFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDT
SSQIKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGVNLRARRIIAEAE
KYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGEILLYITSLNAQNIE
NKNINQFDNL