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# Nitrosomonas europaea ATCC 19718, ATCC 19718

>NE1254 putative general secretory pathway protein H precursor
MVIVLLGLLSLIGAQALPGDDRHLQTVSERIEHRLRKARLSAMRSGTAVF
IPCESLAAPSDRTTPVTSSRSTDWMVTCSGEVGRTEGITFFTDGSSSGGI
IELVSGVARIRIHIDTLTGTSRLE
>NE1610 Bacterial type II secretion system protein
MRYTVRALLAGKGAVLLELDAASEAEVRNRISAQGGVILSIRRNFSGFLP
RSGSRFPLSDFSQELLALLTAGLSLVEGIETLVEKEEDSVTRELLQQILA
RLREGVTFSRALEFYPQVFPSLYVATIRASEQTGDLGEALSRYLVYQSQM
DLVRKKLVGASIYPVLLLVLGGLVAIFLLVFVVPKFSAIYEDMGTDLPWM
SMLLIEWGHLVQKNGWMLAGMAALFLTAAFYTFSRPQIRAHLLRAVWRIP
TIGERMRVYQLARFYKTLGMLLRGGIPVTQALEMVSDLLQPHFRPRVKTA
AALIREGKAISSAMQSAELTTAVGSRMLRVGERTGMMGDMMERIGNFHDE
EIGRWVEWMTKLIEPLLMAVIGTVIGGIIILMYLPIFELAGSIN
>NE1603 putative general secretion pathway gspG related transmembrane protein
MLQTASCRGFTLIELMIVVAVMGILASAAMPLGEMVVKREKERELRIALR
QIRTAIDAYKQAADEGLVEKKADETGYPHRLEDLDTGMDDVKDPDSKKIF
FMRRLPRDPMFPDTEVPAAETWGKRSYASPPDSPEEGDDIYDVYSLSEKA
GLNGIPYNQW
>NE1257 Bacterial type II secretion system protein E
MSMRANQALSNLPEYLSSTTSALIEILQQRGLITDEGIERVQAAALAHGI
AFSTAATRLGVVSERDMARTFADILGVAVLTRAEYPQPPHIPNDLNLAFL
RKHRVCPVMVSETYVRLAMANPQDSVAITGIRFALGKDVEPVAALESDID
EYLQAGIADISAGTDNVTPGASSTGDDIDKLSDHDSEAPAIRMAHQLLTQ
AMDAGASDVHLEPMTDSLVVRYRIDGVLQEVDVLSNRWSRSVVSRLKLMA
RLDIAERRLPQDGRIRFTTRGVSLDLRVATFPTLHGESMVLRLLGQHSVS
PELESLGLDPSGLQALRAALDRPHGIVLITGPTGSGKTTTLYAALNAIRS
PERKIVTVEDPVEYTLPGVSQLQVKPEIGLTYGAALRSVLRNDPDVIMIG
EIRDQETADIAIRSALTGHLVLATLHTNTAAGAITRLLDLGVEDYLLAST
LVFAGAQRLVRRICPECCTTREPTGDERHALASVSGHKAETCQLPVAMGC
PACRGRGYTGRLPIFEALPIGLEEQAAIRQPHAEEVLLGITRRKNTPTLW
SHGLDRVIQGETTLEEVLSVVEEVGQ
>NE0690 possible transmembrane protein
MSVWVVQAAGLGKLTVSSYLGQPLKAEIALESVTDKEINTLSARLASPKI
FQKAGINLAPYHATLSVAVEKRTDGQPYVRVVSSQAISEPFLKLLIELHS
SSGRMLREYNVLLDPADTRKPATAPPVIQSAGNQAEDSAATAAGETQPFV
KAERQPVSQEKSAVQTGNTYGPVMQGDTLSRIARQVSPDSVSLNHMLVAL
YRANRDAFLEKNMNLLKVGVILRIPDEEEISSITVKEAAREVAVQKESWN
SYRQRIADLAGDAPGKNELKQSQSGKIITVSEDTSVAGSGKPEEVLILSK
GELLDDSHSSVKSAESKTAQNYLHMMEEDAIAKERALREANERVAILEQN
VAKLQRLLELKEEASGNKGQAELDQAQHVSDLQPVPVITDQTGTVAETSE
SAAQTPEKSALPVTIPVQPVNPMSSAKSLQPADPVSEEPALMDTLVESAM
ENSEWVVGGLATLLTIALGASVVRRRRAQTEDLNAEDDLYDFNEKDNGSG
TSVMAEAMPSGLENLESSESTIGSAQQAAGPIMMENSSSTDDHTDVDPGL
FFGSRQDERITEDSFLDDSASQIQEEEDATFNELDELGYEIKIDTEEPDQ
TEYKQEAIVETGENDKDDIGEQWIFTATDTGLERKPDSVQQQDTVEEFVS
LHDEHQIDFDLDLPVDTEAQESESRVKNELSDLGSNLANIDLDLGDKSDT
KFQSGEYSEAEEMQWQEVATKLDLAKAYLEMDDRDGAREILEEVLREGDD
EQQSTARSMLDQIS
>NE1602 Bacterial general secretion pathway protein G
MVKLADQTVIQSVSNRLKRPGGHWRERGFTLIELLVVMVVIAILLTIVTP
RYFNSVDRAKETVLKQNLSILRDAIDKYFADTGKYPTDLHQLVEDRYIRA
IPVDPITEENVWVEIPPPDPEMEGVFDVHTTSDRQALDGTFYEKW
>NE2478 hypothetical protein
MFILEGNSIVKINQIPPGRTETVAGGSQKKMDRANSAKPGAVGESNNVHI
SSLSMSIQSLDASSETMNTAKVAEIKQAISEGRFKVNPEVVADRLLETVK
ELIQNKR
>NE1860 conserved hypothetical protein
MVNPQFASNFYFDQRLNTEAVKLLPGEYFVTTRNMVLSTVLGSCVSACIY
DGQSGVGGMNHFMLPRGEDDQGLQVECARFGGYAMDILIRELLRNGAHKE
NLVSKVFGGGNVQRAMVSSMIGSQNTRFVKKYLAERGIPILAADLEGNHP
RKIHFFPKNGRVLQKKLYVSRNDTIVEREQNYSRLLLSVAQSAIQPGTRE
N
>NE1749 conserved hypothetical protein
MQINHKSSQNQQGMTLVEVMVAMTIGLVLLGGVVTVLSSSQNTYRVNEAL
ARMQENARYAFQLLSRDIRMAGYRGCIGDGVAITNVLNGNTDFLWRFDQP
LEGFEAAGASSWAPALPSEVTSPLTGGNMGRDIVVLRGVESNYAKVISHA
SESADLVVEAGSDIAAGNTVLVSNCQGAAIFKATSVSDVSGQKNIAHADN
PGGSAGSNASTVLGRSFTGGEVMRISTRSYYIRENSAGIPSLYWKRGSQP
AEELVEGIENMQIQYGVDTDGDKTIDIYHKADEVTNWENVVSVRIDLLVQ
SVEDGITSQSQTYTFNGATVTPTDRRLRQTYSTVIALRNRAP
>NE1594 conserved hypothetical protein
MNINAVTAELFQATAPVQPAMPAARTGEREMAPAAQPPAETSDIKPEQVK
EAVNQIQQFTQALTQNLKFSIDEDTGKTVVKIVDAQTQEVIRQMPSEEAI
KIASALGKIQGLLFNGQA
>NE0462 possible mopB flagellar biosynthesis
MQPIRIRAGAALWLWLPQQLLAEPAGNQGFTPPPPIISTESMLQLSAGLL
MVLAFIALIAWLFKKIGFHPANRTGLLKVISSASVGQRERIVLAEIGDTW
LVLGVAPGQVSLLHQMDKNTLPAGETAEPPHASRFTEKLQAHLEQGHER
>NE1308 Fimbrial protein pilin:Bacterial general secretion pathway protein H
MQHTQKGFTLIELMIVVAIIGILAAVAIPAYSDYQAKSKVTAGLAEISAG
KTAFEERVNNGDTVGTDPTVIGLKTPTSNCTIVTSGTTIECTLTNAPSQV
SGKKITLTRTDGTWSCATDADNKYAPKSCPGVTPTP
>NE1611 Bacterial general secretion pathway protein G
MLICTLPGSFPEKSKFKDHLNMKYASNIRPCMVYERGFTLLELLVVMVII
GLLAAYVGPKYFSQVGKSEVKMAQAQIDSLEKALHQYRLDVGTYPTTEQG
LNALLTAPANEPRWQGPYLSKRLPADPWGRPYQYKYPGAQNDFDLFSFGK
DGQPGGSGEDADITNW
>NE1751 putative type-4 fimbrial pilin related signal peptide protein
METGMTEAVSKGFTMIELMLTISIASILLAMAVPSYQSLMRESRLTTQAN
ELMTSLHYARSEAVKRGMRVTICKSSDGASCTNGSSWQDGWLIFSDAGTA
GMVDGGDEVLRVFPGLNGSTLGAGGNFANWVSYLPNGRSQGNTGLPNDTF
RLCNQASGRNVIVNNAGRPSVERVSPC
>NE1397 CheW-like domain
MEPIAAKPGFGGFRIGGMELALPMQVLREVVPCGGLARLPCASPCVIGGI
DLRGIMVPVVDLRIVFDMPTPRVPFQNVMIMAHENRLLGLLTEAVTGVFT
GESEEINPISFAAADQPVFHGSIRRSDNGTLVNLLSPSVLATLRDVPLAD
HREMKKKAATRTDAASGQDKVMPVLLLRCNRIAFAIDAMEVYTTLSDPEI
RNSPLAMGSCRGVIEHAGSRIPVLDLLEICGLGKIEPDTPLQAFLIQLPK
GMAAFLVSKVIDVVRIRAGEIIDVPTYALPQPELFSGAIPKSSLPASRSQ
QEAILASQFLVLRGAGLKSNHEIMALADVSSPQQPFIHQDHSQTSVAGKK
NTSRKRDMVTYLLRSETATPFEQIREILPFNHSIPVFEQTGPLLGMIVIR
GRSIPVVCLHRLMTGQFTPASSSAYILVVEIDNEVMGFAIPALKSIETAE
WEPELPQFGGSADDDLKRAIHSNKLAQIGNGNAIRMLPMLDLEKIGRAFR
ARQLSAA
>NE1250 two-component hybrid sensor and regulator
MNTATRINISSVMGIREAIEQIFTLIHRHFDSYATDTDDTRQIEECRYYM
HQLNGMLEMLELNGVAFVGHNVEALLTALQERRTEPDTEVLTVTRQAIRS
IYRYLDALIDGETDNPVRLFPVYRKIMQIQGLEEISESDLFFPDVRESLP
LQPVEPDLDDSSRQEAAKQARAQFQSGLLSWLKNAEDRHSLQKMVEAVRS
VEKLPAPIEQRKFWWISSGFLDSLLHQVQAADKSARRLCGKIEQEIRHLN
KESHTVADRLTRELLYRVARSQPVSERLQEIGRVYDWQIPLSTIDNREHL
DESILDEEATASDLQNMRVLLEDINDRWRRFNAEDQENLSSLLALVERFR
TQAARVNCPPLEKLAGVIHGALSYLRIRPQSMNEGIALDIASSLLLTENA
IDNFHRLSPEFPAQVEVLATRIRAVTTGKGNEDDLPDLPSPDQAGHLAQE
KKLLKQVAQEVLTNLAQVEDILDRFFFEPEIRNDLPVLPELFNQISGVLL
MLGLDRAGTLLDSCRDLVEKLTDPNRPLDQAEQILLADALSGLGFYIEAL
RNAQSDSEEILTATINQFNQKLAGQSLSTDIPAISAEPALTAPEMPSEAA
TDQLYDPELLAIFLDESTDVLASIAAHLEACYGDHLDLAALTAIRRDFHT
LKGSGRMVKLEALSEVAWRIEQLMNRWLSEQKPATGELLDLLAESHRQFC
NWCASLKKNGTAEIRAQHLLDRIREMMYGTEEQTAMDATIPVLPLSAVPE
QETSLEWTVEPVVSPSAAEAESVTETMVQIGKIEVPAELFSIFIKEASTH
VDTLKQALGLSEGNTILSISHESMLAAHTLTSTARALELDFIAQTGQVLE
RWFNRLLMTSGMPGPQILPHMTAAVNLLDDMVTAIRNHQYPSIETLQAGE
ETTNELARLLEEVSAQMPETEPAESECIKPESAELQASEILAEIAPVLLQ
ESAVTLPVSPVQSTETEAESTGVDRELLEVFLEEAQELQSEIGTNLRAWR
RQPEQVAARKAVLRALHTLKGSARIAGALQVSDQAHQMESDIESTYDQAV
PAALLDRLESRFDTILDDIEQLRSSLQPVPQPVSPIEETGIRPDLPVFPV
IAEDDQPVRKTVLRVDAELIDRLINESGESSLIRSRIEAQLYDLEQSLQD
LGESVDRMRGQLREIELLAETRIPSGALPSVTDEADFDPLELDHFTRFQE
LTRLMAESMDDVVTIHKSLREMRRAADMAVDQQAHLNRRLQQDLVHIRTV
PFRHYSERLYRVVRQAAKDTGKQASLTIQGEDIELDRSVIDKIGSPLEHL
LRNALVHGIETPQERLQAGKVETGQITLDLHQEGSEIVMVLRDDGIGLDA
GRIRDKAHQLGLDDPENAQNDEQWYPLIFTHGFSTLDNVTDMAGRGVGLD
IVRNELGEIGGNITVTSEKNRGVTFTLRLPVTLAVTQALMVRAADSTYAI
PAANVVHVLEMNSETLGMAYREHHLTWNDDRFPLIYLPHLLGVPHTFPEI
RRHNRIVLLQAGHERLAVHADALVGQCEVVVKNVGPQLSRAPGIEGATIT
GDGSVVLIIDPIRLLQREQVQELLSAGPVAPVNASDIHPSAIAPVVMIVD
DSLTVRKVTSRLLERQGYEILIAKDGVGALQLLRETTPAIMLVDIEMPHM
DGFELIRAVRDNPQLHTLPIIIISSRTADKHRKVAEELGVNEFMGKPYQE
EELLYHIERLIKG
>NE1253 possible general secretory pathway protein I precursor
MAVQRGFSLLETLITLAVAALFFGVLLPSIVTNLDRIKADTLRAEALLVA
QNQMEAHAVIATEMEGHFEGQDGPFSWTATIEPSEKKDRSAGTAGPFSLR
RVHVDVFFQGGQPLVSLEAYSVGAIR
>NE1864 HAMP domain:Bacterial chemotaxis sensory transducer
MLQNMTIKSRLIFIVGLLSLALISVGSVGLYGLYQSKTKLETIYQDRVVV
LGHFSQILDSLLQVRMYALLVTNLRDTGVARQRAAQVVDEDAKINELWRK
FTQTYMTPEEQSLAGRFTEQWKVYQAARNQTLNHAINGNFDAAVEVTLQD
AGPKYEAVHGSLMQLIGLQESVTAQEYEQLQAMTSIIFATTITLTVLGIL
LAGGVGFVLIRGVSRSINQAMEVADGIANGRLDQRIEVTGRDEISRLLQS
MTKMVEVLNGFMSAQQKMSQQHDAGAISYRIPASQFPGSYGEIANSINEL
VKAHIAVKMRVVEVVARYAQGDLSVDMDRLPGEKAKVTETMDKVKASLQA
INGEIKYLVEGATAGDFSRRGKADKYQHDFHAMVSNLNQLMQTCETSLED
VIRIMDALAEGDLTQKITREYQGMFATMKDDANITVGQLASIVRQIKDAT
GLISTASKEIADGNSDLSQRTEEQAANLEETAASMEELTSTVKQNADNAR
QANQLAASASDVAVKGGEVVSQVVQTMSAINDSSKKIVDIISVIDGIAFQ
TNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAREIKELISNS
VHKVEDGTQLVDQAGRTMEEVVLSVKRVTDIMGEISAASQEQSLGIEQVN
QAISQMDEITQQNAALVEEAAAASESMREQADQLSRAVAAFKLEHGMAAA
HTDSQPFVERRGPNRATNVERLPQQVKGHRKTASPGASSSIPTGTDGDWE
EF
>NE2551 conserved hypothetical protein
MARFNKKLRLRSRWQSGIFTALFLILVGTLGYLAQEFRIQWDISQNNRNS
LSQASIDLLQTLDDPLHVTVYATQQDLQLGDIRGIISNFISVYQRIKPDL
TLNFIDPVEQPQQAQSAGVRLNGEIVISYKQRKERLTSINEQAFSNALVR
LARTEKKQLLILSGHGERKMDGITQRDLGNFGKKLQETGFESTLFSLTDP
PEIPDTGVLVIASPQIELLEGEVKKILDYLARGGNLLWLVDIGSLNGLLP
LAEKLGIVFTPGVIVDPQANRLRVPTTFALATRYGAHAVTENFDYITVFP
FARQLILEEGTDWHRTILAEAAPEGWVETGSTDSSEGEITFDEENDVSGP
ISVAVALSRVVEDREQRIIVAGSGHFLANGYLGNGGNLDLGMNMINWLAG
DEAFIPIQPRATLDSQLALSELQLTLIVTGFLIILPLVFLIGGISINWYR
KRR
>NE1748 hypothetical protein
MDANFSADFSSKEDQFFKPQRAAAPAARHVSLTVKIRFLHNDPGKSLQTM
PELAALAPRTKHHELRCSPLAAIENRVRRHFCTWVSRLLSPTLLVRHDLK
SLAMTSQLTKTSKLLLQRMHATGFVTQQSTIIASCAAAQRSGTFITPSTG
LLHTTGIRNDGYVIARQRGAVLVTGLIFLVILMLLGTTAMQGTLLEERMA
GNLRDEMLAFQAAEAALRSGERFLEQVTLPEFNGKNGLYHHACSDEAVDE
DIDESFLCTTTPDPVAEMKWNAGDSREIDVVAMDGVASQPRYFIEQLPSV
PLMGDGGSAQQSGTSLNANMFRIVARGTGGTETAAILLQSTYRR
>NE2290 Bacterial type II secretion system protein E:GAF domain
MSISLASEAGSGIIPGNGIPSDSAGRLQSVIDRIQAAGNVDEIIFETSRD
ICEIFNADRLTVYTLGDDKTSLTSRVKTGLDSWQNLKLPINEHSIAGFVG
LHKQAVNFRDVYDRCELREQSEYLRFLQEVDKRTGYRTKQMLVVPILNAG
DNDLLGVVQLINNKADEPFSQRVVDELSEICQALAVAIRQRQMQQLLGRT
RYDQLIVNALISASEFELATRQARETGRDLEDVLIDEFGISVTQVGGALA
VFFGVRYERYRPDRIKPMDLLKNLKREFVESNSWLPIDDGTEGLMVLTLD
PERIRALRIVNQIFPKRKIIYAVCTRREFQAMLDLFYGGNETENLGGSID
EMLSNLGEGDGGEETRETDTDEASAAADNELVKLVNRIIMDAYKTGASDI
HVEPLPGKGKTSIRFRKDGSLMPYIEIPASYRNPLVTRIKIMCDLDISEK
RKPQDGKIKFRKFAPLDIELRVATIPSAGGVEDVVMRILAAGEPIPLEKM
GFTSFNLERLKSIISKPYGLFFVCGPTGSGKTTTLHSILKYLNRPETKIW
TAEDPVEITQKGLRQVQINPKAGLTFATIMKSFLRADPDIIMVGEMRDKE
TTSIGIEASLTGHLVFATLHTNSAPESIIRLLDMGMDPFNFADALLGILA
QRLAKRLCKCKKPHVASREEIRALLVEYCEELKNIGSFKADPDAACREIE
SRWVQQYGDENGQITLYEPVGCEHCTQTGYAGRVGLHELLTATDALKKNI
QEHARVAEMLVTALHDGMRTLKQDGIEKVLQGITDIHQVRAVCIK
>NE1255 Bacterial general secretion pathway protein G
MLELLVVLVIMGLLTAVVTPQVMNMFSGAKSDTAALQVETITTALNYYRI
DTGSYPDMEHGLRALWEAPPGVNRWRGPYVRKQQHLVDPWGRSYRYRLPG
KHGPVDVFSLGADDKEGGSGEDTDIGNWDKQ
>NE1256 Bacterial type II secretion system protein
MTRFTVRAITPEGGSRIFTREADDERQLTVQLIGENLTPIRIIEQDGSLN
DLLSRPVTLNRRIPIRDVALFCEQIGTMVGSGLNIEQALQVVSRQKGNRP
SARMARHLLPRIQAGGPLSDALDIEVGMPRYLPSMIRAAESGGRLAEGLE
TAGRYLQRQASTRAEIANALTYPVIVLVTVMIALLIVLTVVIPGFEPIFA
GEEHRLPGMTRFVLWLSDLAVNHAITSLLWMGAILAIGFLLYRRSVRFGD
WVAASIMRLPPVRIIDQLNVSRVLNVLGMLFQSGVEASEAVLLAAQAAGS
RRLRVALEGASRKLREGGTIGTTLGAIYVIPDETCALIEVGEHTGELGKT
TLRAAQLLERDTSEQLERMLALVNPLAIAFLGIVVGLVVGGVMLGILSIN
QLALRS
>NE0512 conserved hypothetical protein
MNKKLIGIVLALAFPLAVTANPGEHKHDHEQYRAKKIERLDKELSLTDDQ
KSRIDTLFKQNGEKFKAIREETQSQLKTILTPEQYSKLQELKQRRQEQWH
KKHQEKLQERKQEQSGTTQ
>NE1746 Fimbrial protein pilin
MSRTRTYTGNSGFTLIEVMVVVAIVGILAAIAYPSYQEHVRRANRAEARG
ILLEMAQLLERNYTEANNYENFVLPVSQSPRTGTARYTVQFSADTLTRNT
YTLEAVPEGSMAGDACGTLTLTQTGVRGSDGVVAECWQR
>NE0705 General (type II) secretion pathway (GSP) D protein
MNRFQTFFIGTAMLAGLNACSTTRPPEPAPISTWKIMPAVPMQPSDAASS
TSTTPEHPTGISTEYFEAGWRGPSSSKVGKFAFADTGERFELNFNEADIR
GVIDVVLGEMLKLDYVVSPAVQGRITLRTSRPVSKASLLSALEAALGTVS
AVILKDEQTISVLPWSEAPQRVRPAQRFASAMPPTPGYAVEIIPLRYINA
NDMQAILDSFVPKGIVLQADTRHGHLVVAGSSQDRGAILHTIENFDVDWL
NGMTFALYKLSQSRLEAIVTELREIFQGEIDLFTTRIHLVPLERMQAVLG
VAQNKSDLELLREWIERLDVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT
GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVA
IEENNSLMFYGTEDEFRVIQEALKQIDVLPRQVMIEAFLAEVTLNNNLRY
GVQWFFDSGENTVTLSATDVGSVASQFPGFSYIYAGKANARIVLNALQSK
TEVKILSAPKISVLNNQKASLQVGDQVPIVTQTSQGTVVSGAPVINTIQM
RDTGVILEVIPRVNDNGNVILDVTQEVSEVAQTTSSGIDSPTIQRRKIHS
VIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSNTSDIRRT
ELVVLLVPHVMRNQMETQSVADALVDGLEAASRLAERARLPAPSRAQ
>NE1252 hypothetical protein
MHGTCKAEKGFTLLELLIAMIIGSGLVYLTSEVFSLIQRGVEQSRQAADQ
VMTEQRAIAVVREALSNLIPPVTSDKRYRIVATESVFEFAAVPVDGRSQW
GSMNTRIVIEPSDSGNFMIVFEQWKSEAGSSFTIPKSRLILFKDLKSASL
QYLYHTSRGFHTQPEEPEQHPELVTLRWTKADYVGQTGAESLSVRTRIDA
GANCQLDLQSLSCR
>NE1609 Bacterial type II secretion system protein E
MQTNVALPDKPAIDPVMLSQAREQAIARSTSLIRVLEETYQGTPDELVTV
LGEVLRMPVLTMNDLYALHPAFDRLPFALAAKRECMLLQKQDQSYLLAVS
DPFRTGLRDWVEEYVPVDALWHLVHPADLAAFFVQQEQTMRAMDNVLSSV
QENLIQSGIEELSLKTIHEGTSQVVRLVHSTLYDAHKSQASDIHLETTPG
ALSIKYRIDGVLTSIGTMQEANLAEQVISRIKVMSDLDIAERRIPQDGRF
KVSIQGREIDFRVSVMPSIFGEDAVLRILDRQALTDHVEGLTLNQLGFNA
TSIASVRRLSAEPYGMLLVTGPTGSGKTTSLYAAISEVNHGHDKIITIED
PIEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKIMVGEIRDAETAQI
AIQAALTGHLVFTTVHANNVFDVIGRFAHMGVDPYSFVSALNGIVAQRLV
RLLCPNCMVAEQPDQQMIADSGITPEQAEQFDFRSAKGCGHCRGSGYRGR
SAIAEILLLNDEIRELIIAQAPIRRIKEAARLNGTRFLREAALDMVKTGQ
TSLQEANRVTVVA
>NE1866 cheA, probable chemotaxis sensor histidine kinase transcription regulator protein
MSTDLEQFYEIFFEEAGELLAEMETRLLRLDILSPDPEDLNAIFRVAHSI
KGGAGTFGFTDMAELTHVLESLLDRLRRNELELRAEMVDAFLHARDVLKH
QLDGHKGNGSADPAEVEAVNRKLKELERDTGSSHTPSECLSETIESASVE
ESASAVGAAVPVAVAELSVAVAQPVSVPENAATYRIEFDCTNLARPVMEK
LLADLSRQGQLKNLTEPGNETVCTLQLSTQISEEDVWESLAFLVDPTSLS
IEIAGKIADDSPLAAVVPEPVIECEQKHPPAIDQTAATVVEVQEEKEETI
TPVLSNAASPVPVSLVSSGAKQPAGATAGAPRSKSSAEQSSANSESSSIR
VSVEKVDQMINLVGELVITQAMLAQTASQIDPVIFEKLLNGLNQLERNTR
DLQEAVMSIRMMPISFVFSRFPRVVRDVASKLGKQVDLKTVGEGTELDKG
LIEKITDPLTHLIRNSLDHGIETPEKRRELGKPARGTITLRASHQGGSVI
IEVADDGGGLNREKILAKAQSRSLPVNENMTDQEVWMLIFEAGFSTADVV
TDVSGRGVGMDVVKRNIEGLGGRVEIDSITGQGTRISIRLPLTLAILDGL
SVAVGDQMFIIPLTYITESLKPAAEDIRTIQGQGRVVQVRGEYLPVIALH
EIFNLEPTVKNIHEGILVILDAEGSKAAMFVDTLVGQHQVVIKSLESNYR
RVAGVSGATIMGDGSVALILDAVGLVNVTKQRMIHAA
>NE1859 cheB, CheB methylesterase:Response regulator receiver domain
MKKISVLIIDDSALIRKLLTEIINARPDMEVIGAAPDPIVAREMIRTLNP
DVLTLDVEMPKMDGLEFLEKLMRLRPMPVVMVSTLTERGSEVTFRALELG
AVDFVAKPKMDIRNSLEAYTDEITGKIRTASTARIHRLEPVASNGAASGS
IVQMPRHHGISTEKLIIIGASTGGTEAIKDVLIHLPPDCPGILITQHMPE
GFTRSFAERLDRLCKIRVKEAEGGERVLPGHAYLAPGHSHLLLKKSGANY
VTELSQTDPVNRHRPSVDVLFQSAAHCAGKNAVGVILTGMGKDGAAGMLD
MHHAGAYNLAQDETSCVVFGMPKEAITLGAVDEIVPLQDMARRILARLVG
AGKQAVRV
>NE1861 cheR, CheR-type MCP methyl-transferase:Generic methyl-transferase
MNARASGEHNTREYAFSSHDFECVKKLIYARAGIALAENRQEMVYTRLSK
RLRATGTNNFNDYLQRLERDSEDVEWESFTNALTTNLTSFFREAHHFPML
AEHVKKRQPGHTVKLWCSAASTGEEPYSMAMTMVETFNSMKPPVRILATD
IDTEVLAAAREGVYPLDRLESMSSERIRRFFLKGKSSTSGYARVRQELRD
LVTFRPFNLLDPKWPMRGPLDAIFCRNVMIYFDKPTQYRILQKFVPLLDR
DGLLFMGHSEVFQHASDLIRLIDRTVYKPVKK
>NE1865 cheW, CheW-like domain
MLLTQAAAAGESLNPVGNLASSEFLIFRLGKEEYGIEILKVQEIRGYDAI
TRIANAPEFIKGVINLRGVIVPIVDMRIKFNLGEALYDQFTVVIILNLSG
RVIGIVVDGVSDVINLDTEHLRPAPEFGGVIDTEYIIGLGTMEERMLILV
DIEKLMSSSEMGLLEQTGK
>NE1924 cheZ1, putative chemotaxis protein CheZ
MNNSFDTDKKTIDHPGQLARVLHNCLSELGYDWRLRQASHGISNSKDGLN
YIASKTTQAAECSLLAVENARPILNNLSADAANLHKLWCQIPETTAAIIA
NQPTLNNALKQTLDFLNNVSSQAASTQACLTEIMIAQNFHDLTGQVIQNI
SRTIETVEQEMLQLLANDSANEEKEIKLDNGLLNGPVVNPQKQDDVYVNQ
AQADNL
>NE0301 flgA, putative flagella basal body P-ring formation protein
MKIKFLLIVLVYALTPMAATASEDSSASTILEVVNDFVRNETRHLPGKVI
IKSNRPDTRQTPRSCRQPQPFLPTGGRVWGKFSVGVRCQDEATWTLYVPV
EIEVITRVVHAAQPVSMGKQLEAQDIVSKEADLVRIPGEVATDPDQVIGK
VATTFLASGQPIRTHQLRAPHVISRGQKVRLTATGAGFAVSMEGEALAAA
AAGEVVQVRNHTGRIIRGIARAGGVVEIKQ
>NE0302 flgB, Flagella basal body rod protein
MISKLENLVGFNQRALGLRATRQELLSGNIANADTPGFKARDFDFAKAMQ
NVQSPQRVQHSSLATTAPGHIGMADFRSITSVPKQYRVPQQPSIDGNTVD
MDTERMQFMDNAMRYDAGLTFISGQFRTLLSAIKEGN
>NE0303 flgC,flaW,flaFIII, Flagella basal body rod protein
MSLFSVFNVAGSSMAAQSQRLNVVASNLANADSATSSTGEAYRSRQVVFR
TIDVTADKAKGVKVAGVVNDPSPMRVVYDPKHPMANEKGYVTLPNVNVVD
EMVNMMSASRSYQNSVDMMNVTKTLLQKALTIGQ
>NE0304 flgD,flaV,FlaFIV, putative basal-body rod modification protein FlgD
MSQVQNNSSVSELLASNSGSIKSYRKDEEDPQDRFLKLLVTQMQNQDPLS
PMDNAEVTSQMAQISTVSGIDKLNTTLEKLVADSDARRSFEAATMIGRGV
LVPGTDMQLENQAAIGGFELAESVDKLTVTVKDSAGITVREIDLGAQAAG
VGTFVWDGMANNGNAAADGQYSFALKAIRADKEVSSSALAFGSVSSAQAG
KDGALLEVGRLGYVGMDAVKKIF
>NE0305 flgE, Flagella basal body rod protein
MGFQHGLSGLKAASAKLDVTGNNIANANTVGFKQSQAQFADVYANALGGG
RNQIGIGTQLAAVAQEFNQGNVTPTNNPLDVAITGNGFFRMDNNGSISFT
RNGQFHLDKDGFLVNASNYNVTGFGADASGQIIPNIPVNLRLPTADMTPN
PTTSFMTGVNLDARADVVTDPFNVANPDTYTHSTSGEIFDSFGNSHILNL
YFQKTAASTWGVYTAVDGTVVDPSTGLSGTDSPITLSFNPSGIMTSTGSS
TINVAASVLGAGVSPLAFELDLTRSTQFGSKFGVNVMSQDGFASGRLAGY
SISDDGQIRASYSNNVTRTVGQLVLAGFSNPNGLKPLGSNQWGETAESGL
PLVGTPETGVLGSLQSSAVEESNVDLTTELVTLIMTQRVYQANAKTIETQ
DAVMQTIMNI
>NE0306 flgF, Flagella basal body rod protein
MDRLIYTAMTGALHTMTQQATVSHNLANASTTGFRAQTDAFRAVPVYGES
LPTRAFVLDSTTGADFTPGAIQQTNRPLDVAVQGSGWIAVQLENGEEAYT
RHGNLKMDANGILQTQQGFNIKGESGPITIPPDSRIAIGKDGSVSVLPSD
SRMTAVSIVGRIKLVDPPAEQLVRGEDGLFRLKEGGQAPVSEKVALIDGA
LESSNVNVISEMVKMITLARQFDMQMKMLENAQQNAQQAGEIMTLRG
>NE0307 flgG, Flagella basal body rod protein
MVRSLWISKTGLDAQQTKMDVIANNLANISTNGFKRMRPVFEDLLYQTIR
QPGAQSSERTRLPSGLQLGTGVRPVATENIFLQGNLQQTGNTRDVAIQGE
GFFQILLPDGTLAYTRDGAFQSDQDGQMVTASGFPLQPSITIPPNTLNIT
IGRDGTVSVLTPGSALPVPVGNIQLTTFINPAGLQRFGENLYLETMSSGV
PNPGIPGTNGIGLLNQGFVETSNVNVVEELVEMIQTQRAYEINSRSISTS
DQMLARLTQL
>NE0308 flgH, Flagellar L-ring protein
MGDSGFSVFSPDRAAPEFVDGQCSGVMESFMRNRGHLVLPVLIVMICVVS
GCAITPTPKVQQPMSVRPPDLPVIPPSQTSGGIYQAVFDYQGRGRYIPLF
EDRRARSIGDTIIVALNEKTNASKKTGSNAQRAGEIGLSVPSFLGLPFKS
IFQDLDLEATSSNKFDGKGESSSNNNFTGTIAVTVLDILPNGNLLVSGEK
QIGINQGHEFIRLSGVINPINIINNTVSSIQVADARIEYRGNGYLDEVQT
MGWLSRFFLSISPF
>NE0309 flgI, Flagellar P-ring protein
MTLSKWILSFGLSVCLIVSHPVSAERIKDLANIQGVRANQLIGYGLVVGL
DGTGDQTQQTPFTVQSILSMLGQLGVNLPPGTNLQLRNVASVMVTATLPA
FAKPGQQIDVTVSSMGNAKSLRGGTLLMTPLKGIDNQVYAVAQGSLVIGG
AGASSAGSSVQINHLGAGRISAGAIVERAVPTVLGQGEYINLELRDTDFT
TARRIVDTINSRFSYGTATALDGRVIQLRAPLNNNQRVTFISQIEDLDVI
PAQGIAKVIINARTGSVVMNQMVTLESSAVAHGNLSVIINTQPIVSQPGP
FAQRGETVVVPQSQIEVRSEEGNLMLLPGSASLADVVKALNAIGATPQDL
LAILQALKASGSLRAELEII
>NE0310 flgJ, Mannosyl-glycoproteinendo-beta-N-acetylglucosamidases
MINSADLSGQLAIDAQAVDQLRTRARHDPQEALKQTAKQFEALFLNMMVK
SMREATPKGGLFDSDQSRFYTQMLDQQLVQNLSEKGIGLADVLVQQLSKT
MGEEQSPGNAIDQAESLLTTITGKSGEPLVSLAPGQTKDLPSQLWSNLNR
SSVKPSFSTVSPTMPAGRVGIASSSGGIGSAESVAAHPREFVRDVLPHAR
KVARETGIPEHFMIAQAALETGWGRHQIRRADNQPSFNLFGIKASGNWRG
GVVETVTTEYVDGKPQKLREKFRTYDSYEDAFRDYAKLLQNNPRYAAVLK
SRSATAFAWGLQQAGYATDPSYAEKLLKIINSDALSI
>NE0311 flgK, Flagella basal body rod protein
MANGIMNVGVSGLRAAQVALLTTSHNISNATTPGYNRQQAIQSASTPLAN
SDGFIGRGVQITTVQRIYNQHLVSQSLQAQSQSSQLDSHYNEIKQIDNLL
ADTTSGLTPALHNFFNAVQDVASNPASISSRQAMLSNAEALTARFQQMDQ
RLSEMREGVNSQITGSVTEINSLAQQIAGLNMNIQAVESSANGQPANDLL
DQRDALVRDLSRIINVDVVRQNNGHYNVFIGNGQSLVVGSSAMTLKAVPS
SSDPQRLVVAMDQQGGEIVLPEHQLQGGSLGGLLAFRSETLDSVQNSFDQ
LAWGIADTFNTQHQVGFDLQSVAGSNFFEGTDPSDPSQAARNIRVAISDP
AKIAAADNNDGGVTNNINALKLAGLQTENTLQGGTASYQSAYARLVSQVG
NKTRELEVTSKAQESMLNQTDQALQSLSGVNLEEEAANLLRYQQMFQASS
KVIEIGNSLFDSLLRI
>NE0312 flgL, Flagellin, N-terminus
MRVSTSTLYDQGTRSMLQQQDSLFRLQQHLSTGKRIMTPSDDPIGAARAH
ELAQSLSLNTQYADNRYRAADSLQQVDSTLGSVSNLIQSVRTMAVAVGNS
AFSDSERKMMAVELRGHFDELLGLANTKDEQGNYLFSGFKGNTRPFEQTA
NGVEYKGDQEQRLIQVSSSRQLPVSETGDAIFEPGGLSLFQTIEDFIDEL
ETPGGAALGGAVSTALQDLDIALDNVLAKRAAVGSRLQEVDALQQIGEDT
AIQYQQSLSRLQDLDFAQAISDMTRQQALLEAAQKTFTRVSGLSLFNLI
>NE2488 flhA, Bacterial export FHIPEP family
MNNILSLSTLVRGGQLQSLAGPMLIIMILAMMVLPLPPFVLDVLFTFNIA
LAVIVLLVSLYSRNALEFAVFPTVLLITTLLRLSLNVASTRVVLMHGHTG
PDAAGKVIEAFGHFLVGGNYTVGLVVFIILVVINFVVITKGAGRIAEVSA
RFTLDAIPGKQMAIDADLNAGLIREDEARKRREQVAQEADFYGSMDGASK
FVRGDAIAGILIMLITIIGGLAVGVLQHDLSFGDAAKNYTLLTIGDGLVA
QIPALIISTAAGLVVSRVSTDEDLSQQFVSQLLSKPQVLWLTAGILGSLG
LVPGMPHFVFLLLAGMIGTLAYYVTHRPASPAEKSEEPEVVSSEGQDASW
EDVVQVDTLGLEVGYRLIPLVDKQRQGDLLKRINGIRKKFAQEIGFLPPV
VHIRDNLELRPNGYRITMKGSVIGQGESYNGMHLAINPGQVTMALPGNNT
EDPAFGLPAVWIETEQRELAQTSGYTVVDASTVVTTHLNHLIRMHASELL
GREELQKLLDHLGQRSPKLAEDLIPKLLPLATVQKILQHLLEEGVNIRDM
RTIIDTLTEHAGRTQDISELLALVRIALGRAIVEQCFPSDAEMQVMSLHP
ELETILLQVVQSDPVADGGIEPGLADTLTREASNAVKRLEQIGLPVVLVV
PDPIRLLLSRFLRRSLPQLRVLAHSEIPDTRKIKFISIIGGNKK
>NE2487 flhB, FlhB HrpN YscU SpaS Family
MADDNDLERTEPASPRRLEKAREEGQVARSQELTTFTLLIAASSSLWVIG
SIIIQKLSAVLESGLRMEQEVAFNPALLLPRLFQLALDGLLAIAPLLGWL
VIIALVAPMLLSGWLFSSKALFPDLKRLNPVNGLKRIFSSRGLIELVKAI
AKVMVIGGVAAGIIWSHKQDVLDLVGMPLDTSLISMSRLIGLTFMLIVGA
MLLIVVIDVPFQIWNHARQLRMSREDLRKEAKEDEGDPQVKGRIRNMQRQ
IARRRMMAEVPKADVVVTNPTHYAVALKYQDRSMRAPKVVAKGTQLIAAR
IRELADEHHIPVLEVPPLARALYHHVELDTEIPETLYTAVAHVLAYIFQL
KRYQTTGGIAPQLSSEIAVPEEMDHA
>NE2489 flhF, possible flhF; flagellar biosynthetic protein FlhF
MKVRKFLAATSHEVLRKVKDELGPDAVILSNKQVPGGIEIMALAGKDISS
LTSDTPPEATSPAVKTTAAPRQKPASEKKQAPPVQKQPAVADIQSANILQ
EIHAMRQLLEEQLITMGWSNFSQRDPGGMKVLRTLLSAGFSPLLSRHLLE
KLPADRDFEQSLKKTIALLTLNLRTTAGDEIIEQGGIYALIGPTGVGKTT
TTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGISVRSIKD
IDDLQLMLHELRGKHMVLIDTVGMSQRDQMLAEQITMLSQCGTEVKHLLL
LNATSSGDTLDEVISAYQQHGIHGCIITKVDEAASLGIALDAVIRRKLVL
HYVTNGQKVPEDLHEANSRYLLHRIFKPSAENSPFSLQDPEFAMLMAGNY
ADQSVTRQQTRVEASHDQS
>NE1595 fliD,flbC,flaV, Flagellar hook-associated protein 2
MISAPGIGSGLDVSGIISKLMEIEQQPLTQLNTKEAKQQAQLSAFGSLKS
VLSTFQDSVKALAKPALFNGYKATLADTTAATVSTSSSASAGTHDIEVQS
LAQAQKIKSEAFATTDTVIGSGTLTIEFGTYNEDGTFTANAEKTAKTITI
DPAKSTLADIRSAINEANAGVTASIVNDGSGNRLVISSKDSGLANALKIS
VNDTDGNHTDNAGLSKLAFDASTGGVSNMTETVAARNAVMVIDGIPVTKS
SNTINDALEGVTFNLLKANPGTTTTLTVEKDKSNVEAAVNAFVKAYNDLE
KTIGNLSRYDAANKQASVLTGDSTMRMIQNRMRAMLGGNQSAAGGINSLS
ELGISFQKDGTLALDNNKLSAVLNNPDKNIAAFFTTQGGDDTTSVEGFAS
RLSELIDGMTRSDGLISSRMDGINSTIKGIGKQREALEFRLESVEKRLRA
QFTALDTMIASMNQTSNYLQQQLANLPKIGE
>NE2080 fliE, Flagellar hook-basal body complex protein FliE
MNVTSGMDQILAQLKATSDLAAGGSKPSATVSTVSQADFGQLLKSAVDQV
NTVQQTASQLSREFVGGNQDVELHDVMISLQKANVSFQSMIQVRNRLVTA
YQEIMNMQV
>NE2083 fliF, fliF; flagellar M-ring transmembrane protein
MATVQEEIQEEKKTFSQLDKIKQLPTQKKLGLMVAAAAVIALIAGTWLWS
QSPDYRVLYASLSDQEGGAIIEALQKMNVPYQFSESGGSILIPASQVHEV
RLRLAGQGLPKGNLSGFEILENQKFGSSQFLEQVNYQRALEGELSRSIQS
LSAVQGARVHLAIAKPSVFTRERPQPRVSVLLNLHPGRMLSTEQVSAIVH
LISSSIPDMPVKNVTVVDQQGNLLSGQKDNQAETGLDPGQLKYVQDMEQN
FVRRIEAILTPITGEDNVHAQVTADVDFSRIERAEEIYKPNNNPAEAAAV
RSQQQSESVSISQPEGGVPGALSNRPPAPAEAPIEAKQSSEAAAKTTPTD
TRRESTTNYEVDKTISHTRQATGRINRLSAAVVINYRTKLDTEGNPANEP
LSGEEIEKITALVKQTIGFDETRGDTLTVTNSQFNLKGDSLEELPPWKDP
DTVLLAKDIGKQLLIAAIVLFFLQKIFRPFLRNLLPPPPPPPVPALAVKN
GLEHSEAEVSTVRVVTLEENLEKARLLAVTEPAIVANVVKGWVSGNER
>NE2084 fliG, Flagellar motor switch protein FliG
MSDEGIFKSAILLMSLGEEEASRVFRHLGPKEVQKLSEAMAALNDIKQET
IESVLEEFCHLANGKTSLGQGALDYLRTVLTKALGEEKAAGLMDRISQGD
DTSGIESLKWMDAASAAELIKNEHPQIIATILVHLERDQSSAILALFTER
LRNDVLLRIATLDSVQPTALRELNGVLSKLLSGTDSIKKPRMGGIRTTAE
ILNFMPTALESNIIENFNQYDEEIAQKIMDEMFVFDDLLHVDDQGIQLLL
REIQSDALITALKGAKEELRIKIFKNMSQRAAETLREDLESKGPVRVSEV
ETEQKKILKTLRQLADDGRIALGGKEGDGFI
>NE2085 fliH, Flagellar assembly protein FliH
MEAAYVIPKKELSSWQKWEFGSLDPLKSRQKTESPEKTPHTARSADQPEN
QIAAGAKTTAHEAIVLPTAEQIEQIYQQAREEGKTAGYQEGMQQAKHAAL
VEVKHLQSLTGALEQELKQIDQTMAQDLLTLAIDLARKITSHALEIKPEL
ILPVVEEALRQLPAVSQSIRLTLHPDDAARIRDHLENHPAHPKWHIYEDT
QIEPGGCRIESGGCEVDATLATRWQRTLAVLGQEQPWLV
>NE2086 fliI, Flagellar ATP synthase
MTIPDGYHDHVDTTGSVHTPLWRDFLQNCQRLIEPANSFLVSGTLTRVAG
LVMEAVGLKLAVGTSCIVFLPNGNSVTAEVVGFSGERLFLMPSGDIYGLT
PGAKVVPTEYTGAVPRIGTLQHPRRRAADRTKHISVGPELLGRVLNGSGD
PLDRYGPLHCGHSVPLYSRPFNPLERAPIEKTLDVGVRAINTLLSVGRGQ
RMGLFAGSGVGKSVLLGMMARYTSADVIVVGLIGERGREVQEFIEHILGP
EGLARSVVVAAPADTSPLMRLHGAAYATAIAEYFRDEGKHVLLIMDSLTR
VAMAQREISLAIGEPPATKGYPPSVFARLPQLVERAGNGRRGSGSITAFY
TVLTENDDPNDPIADNARAILDGHIVLSRRLAEAGHYPAIDIEASISRVM
ASLVTREQLGQAQRFKALYSRYQRSHDLISVGAYASGSDPQLDRAIELYP
VLESFLQQGMFEQESYIESMEKLSALQL
>NE2087 fliJ, Flagellar FliJ protein
MATPHSLKLLLDHARKQTDDAAINLGKLNLKQQEAEKTLQLLVEYRENYQ
SQFMESAGSGISPVEWRNFKAFICKLDTAIQSQQRLVTMTQQHTEAGSTQ
YHAHRQKLKSYDTLSQRAELHHQARLQKQEQRQLDEHTAHNFSKQQKNAD
>NE0465 fliL, putative flagellar fliL transmembrane protein
MSEATLPAGTGNKKKMILFVLIGVLSVGAGIGGTWYYMKQQQEEGSEVTV
EKKKKKKPTTFIKLESFTVNLQSDDREPHYLQVELSLKVNESDAVKIIED
KKPEVRNQILLLLSSKKPSEINTLEGKQKLSEDIIQAVRSKIDSEELEDD
ILDVLFTSFIIQ
>NE0464 fliM, Flagellar motor switch protein FliM
MAENFLTQDEVDALLNFENGSKHQQTAQKENEVSYPGGVRPYNMATQERI
VRGRMPALEIINARFANSLQIGLYNFLRRGVDISAGSIKTIKYSEFTRSL
VVPANINLVSMKPLRGTALFTIDPNLIFLIVDNMFGGDGRFHTRVEGREF
TLTEQGIIRRLLDVLFEHYEKAWQSVYPVKFEYIRAEMNPQFANIVTPTD
IVVASAFELNLGGNRGEFYTCIPYTMLEPIRDLLNNSMQEDRAEVDKNWI
KSLTRQVQGAEIEIIANLGQTQVTLHQILNMQEGDVIALDIPDTVVAIAN
NVPIMDCHYGILNGHYALKVKTVRSPNETD
>NE0463 fliN, possible flagellar motor switch FliN
MNESTVTEPQTEQDDWAAAMAEQQAADAQPTTDDDNGSPPPSSAHLAGDS
LTKPSPVFEQFSRNDVLNDTRNDIDMILDIPVQLTVELGRTRIAIKNLLQ
LAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSE
RIRKLNR
>NE0461 fliP, Flagella transport protein FliP family
MNDKLPAHPKTSFRHSLPKRSINCGILLLVAGIGVAGPVLAQKTGFPAVT
STPAAGGGATYTLSLQTLLLLTSLTFLPAVILMMSSFTRIIIVLSLLRQA
MGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYLPFSEDKISIVEAM
EKAGDPLKSFMLRQTREADIALFARIAENGEIESPDQVPMKILVPAYITS
ELKTAFQIGFVVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFV
LVDGWNLLIGSLTQSFYV
>NE0460 fliQ,flaQ, Bacterial export proteins, family 3 (FliQ)
MNPEQAMTIGRQALEVTFTIAAPLLLAALVTGLVISIFQAATQINEMTLS
FIPKLLAIFITLTLAGPWILQIMLDYITRLYTSIPWIISGG
>NE0459 fliR, Bacterial export protein, family 1
MFSITTEQLNSWLSTLIWPLARILALLASTPLLGSSSIPTQTKLGLAVLL
AILIAPLLPPLPQIDPGSGVGLIVLMQQIIIGLAMGFSMRIVFTAVEMAG
EITGLQMGLGFATFFDPQQSGQVQLVGRFYGLLATLTFLAIDGHLQVIAI
LAHSFTTLPIGAEGMSTTSFTALVNWGIKIFMLGLHLSLPVLTALLITNL
ALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPLLNQLFQESFS
VMRSLSSKASVAGIP
>NE1596 fliS, Flagellar protein FliS
MFTESPSRAISSYQRVGVESGVVSADPHKLILMLFEGARQALDCSLLYIQ
QNRIAAKGEMISKAIMIIDHGLKASLDKTAGGELANRLEQLYDYMTARLL
TANLQNDAVIIEEISCLLGELHEAWASIGNQPAGKTDVQTATRNTIEDTA
GTGAMA
>NE1593 hag, hag; flagellin
MPQVINTNIASLNAQRNLNVSQNSLSTALQRLSSGLRINSAKDDAAGLAI
SERMTSQIRGMNQAARNANDGISLAQTAEGALVEIGNNLQRIRELAVQSA
NATNSEDDREALQKEVTQLIDEIQRVGEQTSFNGTKLLDGSFASQIFQVG
ANEGETIDFTDIADVTASGLSVDSVDITGTDGTAAASVITTIDDALKIVN
STRADLGAIQNRFSSAIANLQTSAENLSASRSRIQDADFAAETAALTRAQ
ILQQAGVAMLSQANALPNNVLSLLR
>NE0046 motA, probable chemotaxis (motility protein A) transmembrane
MLVAIGYVVVIVSVFGGFAMAGGHLGSLFQPVELIMIAGAAVGAFFVGNS
GKAIKATFKALPYIFRDANYTKSVYMELMTLLYEILGKIRKEGLMSIEAD
VDDPGKSPLFGKYPKILSDHHATEFITDYLRLMVGGNLNPLEIENLMDGE
IETHHQEGEVPVHVISKMGDALPAFGIVAAVMGVVHTMESVGIPPAELGK
LIAAALVGTFLGILLAYGFIGPLANRLEQRLHESGKLLECVKVTLLANLN
GYAPALAVEFGRKVLFSTERPSFAELEKHIKQSKAK
>NE0045 motB, Bacterial outer membrane protein
MAEDISQKPIIIKRIKKIAGQHHGGAWKIAYADFVTAMMAFFLLMWLLGS
TTQGDKEGIAEYFKTPLKVALLGGDGSGDSTSVVKGGGDDISKKIGQMKR
SDFDDLKRSIDMDALQALQDRFELEQLEKLKARIEDTINSNPALNKFKSQ
LLLDITSEGLRIQIVDEKNRPMFSMGRAELQSYTKMILHEIGKMLNDVGN
KISLSGHTDATPYPTGEKSYSNWELSADRANASRRELIAGGMSPEKMLRV
VGLSSAVMFDKADPFSPFNRRISIIVMNKKAEDAITRESLGEVDIHSKEE
VDSQIIQ
>NE0596 pilC, Bacterial type II secretion system protein
MATVAASEKKIKEFNFLWEGKDKAGKAVKGEMRAAGTVVVTSTLRRQGIR
VTKITKARAGGKITDKDITLFTRQLATMMKSGVPLLQAFDIVGKGHSNRA
VGKLLMDIKSDVETGNSLANAFRKHPLYFDSLFCNLVAAGEAAGILDSLL
DRLATYKEKIQAIKGKIKSALFYPISIIVVAFVITAVIMIFVIPAFKELF
QGFGADLPAPTLMVMAISDFFVDYWWAIFGCVGGGLYAFFYTWKRSTVMQ
HVMDRLALRLPIFGEVIRKATIARWSRTLSTMFAAGVPLVEALNSVAGAA
GNQVYFEATRNIQNEVSTGSSLVDAMTATNVFPSMVLQMVSIGEESGSLD
AMLSKIADFFEAEVDDAVEALSSLMEPIIMVVLGTLIGGMVVAMYLPIFK
MGQVVG
>NE0597 pilD, Prepilin cysteine protease (C20), type IV
MNFLDTLQASSLFFVSFISIIGLLLGSFLNVVIYRLPEMLKREWQQQCAE
LRGEQIKALPVYNLAIPGSGCPQCGHKISILENIPIISYLFLRGQCSGCH
TRIPFSYPLVEALTAILSGLAAWHFGFGGLLFAVLVFVWAMIVLTFIDLN
TQLLPDSITQPLLWTGLIVNLNNGFTDVHSAVVGAVAGYLTLWSVYWLFR
LLTGKEGMGYGDFKLLAAIGAWLGWQLLPLVILFSSVVGAVVGTVLILSA
GHSKNMTLPFGPYLAGGGLIALFWGKQINQAYLAMF
>NE0146 pilF, TPR repeat
MNRLIRTGVLGFLVWLAGCGHAPVQEKPTPEELKQRALQSAKIHTELAGQ
YYHRGQYRVAIEEAEIALQKKTDYAPAYNMLGLVYMDLQEDDRAEWNFER
GLGITPNDPDIRNNFGWFLCQRKPDGIEQAIGHFMAAVRDPLYETPERTY
TNAGLCVLKQNDFERAQSYFQEALVIRPGYPLARLGLVELDFSRGEVKKA
WAAINRYLQTYPPAPGSLWLAVRIARANGDVNAETNYAFQLQKRFPDSRE
ARESRAGRLNHER
>NE1006 pilI, CheW-like domain
MTINAMPERQSSLTEQINKKAQETSATIPVLGITIGEDRWLIPMSNISEI
LPVPKITPVFLTQPWFLGVINVRGNVYGLCDLSHYLDNTSTCISAKNRVF
LTIPRLGVSYAMLAGSVLGIRNLMEFVPQSDHEDKRPVVAGIYKDRQDRL
WRMLNLPALLQLESFQRAGS
>NE1251 pilJ, Bacterial chemotaxis sensory transducer
MTGYNNANNMTVLLPVTRYLQIFRQSWFSGVLSVLFLSIALIMLRIDTQQ
ARTHTASLEIVGRIHANIQHLTIVSPEALRGNEQAFVQLRNNLDQLNHYA
TLLQYGGEYQRETLPAIAELLPADLFKTFRNTLHIKENRARQILESREAL
VSLAEILKRVDLVNHGLQKKLQEFSVELTQTGHASNQAVAVETVKILVQF
ITGSVRSLIEGGFQVSSTADQQSVESEQITGMIQTLIKGRDWLYSTVQGN
QLSSGTLSQIRVQFNALEDLLRVAQRLTPEVTGAWHAIHETFSASDSLST
LVSQIEQAITEHNNNAGMLTTVLFYLTAVLTIISGLVFIHLFSTSLRKHI
HQGEQNVETTQKAILRLLDEMEIPAGGDLTARMSVTEDITGTIADSINLT
IEALQELVRKVNHASSQVMSASHQAESISSDLLDATREQAGKIEDATVAV
LGIAESLEAVSGSAEECADVARQTLHAAESGANAVQDAMAGMNEIRVYIQ
ETSKRIKRLGESSQEIGEIVTLISDITEQTNILALNASIQATAAGDAGKG
FSVIAQEIQRLAEHSAEATRQISTLIRNIRGDAQDTIIAMERSTAGVVEG
ARRANTTGSALEEIETVSKRLAQLVIRITEATHKQTRVSNKVAKSMEDIL
SITRQTSRGTQQNADSIKQITEHVTDLKSSVASFKV
>NE2316 pilM, putative type 4 fimbrial biogenesis protein PilM
MALSSSILKKPLDIKFDIDFSLLAGTARMLGVDISASSIKVVELSRKGRL
PHSYRLERYVIEPMPVDALQDGGINQIEQVSECLRRAVKRMGARQKKIVM
ALPLTSVITKKINVPAGLREDDLEFQVETEANQYVPFALDEVNLDFQVIG
PVPGHPEEVEVLLAAARKDKVEDRVATAVSAGLKVMVMDVEQFTAQAVSA
RAIRQQLPDDGKDKVIALIDIGASVTRVNVLLNGESVYMRDLSFGGDQLT
QEIQNQFNLSPEEAEIAKRNGTLPENYRNDVLQPFCETVALEVSRALQFF
FTSTQYIQVDYIFLSGGCAAIPGLEEIISERTKVITQIINPFADMELSGR
VAPRQLKMDAPVLLTACGLAMRGFDPS
>NE2315 pilN, putative type 4 fimbrial biogenesis protein PilN
MIRINLLPHRELKRKARQQQFAVLAGLTVILGMLIIWGVHEMVLDKIDYQ
NGRNQYLKDEIAVLDRQIAEIRSIREKIQEMLARKGIVESLQGNRAKVVH
MLDEVARRVPEGVYLKGFKQTNEHLRLAGYAQSNAWVSTLMRNLDASSWM
ESPLLIEIKAATANGIRLSEFDLNVRLTELPEEGSHTGGEEMTSKITAAA
GQP
>NE2314 pilO, putative fimbrial type-4 assembly membrane transmembrane protein
MNLLEELRHVNPNEPGSWPAVIKAGALALLLATLMVAGYFLDWEEQWTTL
EQVREEENTLRSTFLAKKTSAVNLDVLRQQLAEVQQTLGTLLKQLPNKSE
LDALLVDINRAGLGRGLQFELFKPDARETVREFYAELPVTIRVTGNYHDI
GAFASDVAQLPRIVTLHNIEITPGKDHQLIFNATAKTFRYLDDEEIAAHK
REMSEKDKQKNPKGAS
>NE2313 pilP, putative type 4 fimbrial biogenesis protein PilP
MSSRFSWWIAVMMLSLVGACSQEGYEDLESFVRESGAGLKGKVDPLPEIR
PLEHFVYQAFDIPDPFSNRKNKPGKPDRNELEPDLKRPKEALESFPLENL
VMVGSLRRGNNVFGLVRAPDNSVHRVRTGNYLGQNFGLITGVSEVEIKLR
EITRDSGDEWSERASVLMLQTQEQKQ
>NE0965 pilT, pilT; twitching mobility protein transport fimbria
MNIVELLSFVVKNNASDLHLSAGMPPMIRVHGEIRRINLPALEHKDVHDM
VYDIMNDSQRKHYEEHLECDFSFAIPDLARFRVNAFNTQRGAASVLRTIP
SRVLTLEELKAPKIFAEIAQQPRGVVLVTGPTGSGKSTTLAAMVNDINEN
QYGHILTLEDPIEFVHESKKCLINQREVGRDTHSFSNALRAALREDPDII
LVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRIIDVFPAEEKE
MVRAMLSESLRAVISQALLKTKDGKGRVAAHEIMIGTPAIRNLIREGKVA
QMYSAIQTGQGVGMQTLDQNLTDLVKRGVISAVEARTKAMNKDNFRG
>NE0964 pilU, Bacterial type II secretion system protein E
MEKEQALKFMHDLLRLMLSKKASDLFITAGYPPAMKIDGKMTPVTQQLLS
SAHTAALARAIMNDKQAVEFESSKECNFAIHPEGIGRFRVNTFVQQQRTG
IVLRTITTKIPNFDDLGLPQVLKEVVMSKRGLVIFVGGTGSGKSTSMAAL
IGHRNQNSHGHIITIEDPVEFVHEHINCVVTQREVGVDTESWEAALKNTL
RQAPDVILIGEIRDRETMEHAIAFAETGHLCMGTLHANSANQALDRIINF
FPEERRAQLLMDLSLNMRALVAQRLIPKKSGSGRAAAIEVMLNSPLISDL
IFKGNVHEIKEIMKKSSELGMQTFDMALFELYENGTISYEDALRNADSMN
ELRLQIKLHGSEARKISAETNIEHLTIT
>NE1747 pilY1, putative type 4 fimbrial biogenesis protein PilY1
MKTIRTAMGIRLLMALFILVPIRTEAALSLSDVPLFLTTAVDPNIIFTLD
DSGSMQFEIMPDDLIPSTNSNSNTGDVRFVYPVREGTYGGSTYSNYVVGF
DANNGYTAKLRSSHVNTIYYDPTVRYLPWSKADGSLMIDAKITCAPHNPW
LIPNKNDPAKDCRNLTVNNSQSAGWLQSNNTLKTESRTFYPAVYFHYKGS
GNINSASSYDQIEIKPENAPFNGGENRTDCANSSACTYDEEIQNFANWYT
YYRSRVLLARAGVGRAFAAQGGNMRIGFGAINKGSSTIDGKSTATLITGV
RQFSGTDRTNFFDQLYKHTIPQQGTPLRNAIKDVGEYLKRSDDQGPWSDT
PGQTGGTQPVCRQNYHILMTDGYWDGTDSPGIGNSDGADGSVIINHFPNA
APATYQYKPVLPYSDNRSDTLADVAMHYWKNDLRSNLANKVPTNAKDPAF
WQHMVNFTVGLGVQGSLTSLPGSPGGPTGWPNPTSSDSAKIDDLWHAAVN
SRGEFFSAQDPATFAAGLTNALTNITARVSSAAAVTTNTSRLNTGAQIYQ
AKFNSADWSGQLLAFNLESDASLGELQWEASEQLPAHADRSIFTHNGTNG
LAFTVANFSSLSTAQQAALDKNDGQGMARIGWLRGDKSGEISQGGSFRNR
NNGVLGDIVNSDLLYIKSLDFSYDSLPAATPGQASYHSYRQSNNSRTPVV
YTGANDGMLHAFNAETGVELFAYVPAAVYSGLNRLTASSYTHRYFVDGNA
YVGDAYMGATPAWKTVLLGTLGGGGKSVFALDITDPVNFSEPDVLWEFTD
ADLGYVHGQAKIARLNDGSWAAIIGNGYNGNSDRAWLFIVDLQTGALIKK
IPTNASTSNGLSTPALVDTNGDKIIDVVYAGDLRGNVWKFDLSQSDSTQW
DVAYKSGSASVPLFTARNASNQAQPITSPLEVGYHKQGGYMIFFGTGQFV
AESDKTDKKVQSLYGIWDKGSPIAETNRSVLQQQTITAETVIPPFERTVS
DHSVDWSTKRGWYIDLLQSPEGTQQGERSVIMPMLNFGRIIFTTLIPSID
PCEAGGRNWLMLLDAETGGMMPKPQFDTNGDGKLNNNDRVIAAVGSDGIR
SESVAISAGSLTHLIAATTTGAVEKVTISNGAPPPRRSWKQLQ