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# Dehalococcoides sp. CBDB1, CBDB1

>cbdbA1309 putative type IV pilus assembly family protein
MAKTTTLYIEDAEIKVLVNNGKKIEKWASSPLETGLVIDGLIQDETKVSE
AIKTLFSREKIPAGRVVAAMSGLKSIFRIITLPAVPKNILDEAIKNEANR
VIPTPMDQNYLSYQILPSAQSETKVFIVAHPKNTTDSVVRTINKAGLRLE
VLDIAPLALCRCANLEKVIIVSNWLDNVDIAIIIDRIPQVIRSLSLPIES
QSLAERISTIAEELARTITFYNSSHAESLLDESVPVLVSGELAKEPDSWP
LLLDELSNQISILPSPFVASEDFDPSVYIVNMGMAIRELPASTDNHNSLI
NFNAMPGFYKPKGTSPVAILVPTVIVLLVGGLVWGWFYIDDMKQKNNTLE
PQVQVQETALIQKRAELSAINIQLSNTQKSLTSIEPVVTVLNDMLWDMYQ
GRETITGDYKAIYNLHSSNIGFYTIDYGPYNGYKIVTKTNVLTIRGYGLT
KTAILEYAGVLRGSNRWQDVIITEIVKDISDSVSTYDFEIVLIN
>cbdbA1024 conserved domain protein
MTEETGKSAKESAEEYLKVTRIALKQAEDQAKAAKKAAEAAARDSQTAID
KADTTAKQYQDSMDKYTALYTQKAEEASRRSEEMLAKYTDLFEKAVKRAD
DTSRWAKDNCEAAVGQTKEAMLRIEDATRSAKQAAQDSIRTAKEMSDECI
RASRDAVSQSDETIDMLKKTADVSVRASESALLKMQENGARIRENVDTNV
KNSTKAIAEMNQLSQNSSAEISELINKLQNEICKAEAMNAQMKHLVDSSN
AHLKETVSRVEEVQQNTVQAVKQIQETSHKAADDAKAASAKAVEASRKAA
QEVSQTWVGVFKELISSVDTSKQIIAAVTKQTAEKLEAAASEPPVTRPAI
SPRPAHQPQVVTPEAIQADAAADNTQEETEAVSEENPYYSEPEEKNNRVD
FPAKEVNEVTQNRLEYLAKMYAANKARRQNEPGAKETDEDE
>cbdbA728 hypothetical protein
MENKSPALGQHVDQPGPKIMTKPLPIILDEMEANIRAAAEAARRAEEAAK
QASASAGTSMRAAEVAEKRAEDARLAGENAAAVAKKAAAEAVAKAAEATA
KAQEAILRSVEADRAAVKAAETFKKAAEEASEKARASAAEAAAQASLSAE
EAARRAEEAAMRAEETARAAIYAAEEATAKADEVARSSKEAALAAQRAAE
QAAIRAEEIAKAAKEALERLIKQAEKNSVEVAAAITAAKSAGKDATIKLT
TEAGKTADDAGRKAKEMAISALHLSEQLSHKAEMADVAGDEAIEAATKVS
GKLATAVDEAGRMAKESAANGFKIAENMAQQAVSADKAGDDAIRTAMSIL
QELASRAESTAKSAAERATGAEATAKAAAERATGAETTARAAADRAVAEV
SRVRQTAEEVAQSARRAAEEALAKAEEALVKAVIKRLTSWEWIVILVVIN
LSIVFAAVLIATALGALI
>cbdbA1305 putative type II secretion system protein
MRRFILKYSGKQAGFTLVEMLVALAITGLIMAGLTTSVFQLFTVTQRSND
HMTIIRHLDIVNSWLSNDIQMANIQPEWDPNTHSLTINQTRALADPTDPE
SNVTDYIVTYTYNPITGTLTRTELRLFDNSTQTSLIAEYVSGILFEDELA
PNEISGAVDIKITITLHTQTEDRLLHIKPRISST
>cbdbA1080 hypothetical protein
MILKQGLKLFSRLALTFALLFPTLLVISPVSTLSANTFSASSQLSVTDGV
YTDWGSMATPSQGVHVCTDYSNNGAGDGSGFTNTSSDITNIWVALSSSSN
GLLPASPSNLIENIYYRIDTRGTSMNPGQSYFIQLNLGIAPPARGW
>cbdbA294 conserved hypothetical protein
MKHKFLLRVLGVFSTLALLIVALPLSPVSAAASITLYPNSGPAGSLVNFS
IATDLTSGTAWILFNGVQLTSATVNGGNASGSFTVPTTVTRGTYTVSTHG
LETNASAIFTVTPSITLASATGYVGDSVAVTGSGFAPSTTVNFYLSGSTT
AFAHLNSSSTGTVSGTITIPPAKQGVLSITANDSGTPGTAPVNFTINPKI
TLSTDNPGVGDSITVTGSGFYEGIIQISVDSGTAANAGVSVGSNGGFSTT
FTIPALTRGIHTLTANDAWNKSAQATFDIAQKISVTPTSGTVGTSITVKG
SGFNTTGSVTLTYFGQSVTVALTSGTFTTTFVIPGVQAGVYTLSATDGSV
IATTTLTVTTNITMSPTNNASTPGSVGQEITLTGSGLKANDTVLVTFDSA
QLTITPSPIVDSNGGFSLIFKIPTTTAGPHTITVISGTTSKTFTFFVEGT
APATPAPLTPEMGLKAKQPVVFDWEDVTDPSGVTYVLEIATDENFATILY
QIKDLTDSTYTMTEAQKLESVSSDSPYWWRVKAVDGAGNASAYTGAGSFT
VGFSLDLPAWATYVLIGIGGLLLLALGFWLGRRNADY
>cbdbA1313 type IV prepilin leader peptidase family protein
MLISWIIFFFILGAILGSFINMLSDRLPAKKSIITPGSGCDVCGKRLGIA
DLIPIFSYIFLKGRCRYCGAGIPQRALWVEIATACLFGLFWVMLGPSVEL
GISLLYLCVFITLFVIDLEKGLILNVIIYPFMVLALLLSPLYLQGDGLLA
NLSSSFFGGLTGFGLFLLIYIASRGGMGEGDIKMAGFIGLVCGFPNIFVA
IFAGIVLGGLAAAGLMLSGKRRKGQTIPFGPFLAVGAVTAMLFGSQIMEW
YLALA
>cbdbA1302 gspE, type II secretion system protein GspE
MLQNKVKDTELRKLVSKRVADYLSSHNYQVESDVKITGQSGIEHIFDIVA
RRNDGFTARTMAVCIILGSNQEEESSSIFNFANKAFDTGINERILIAIPK
LTPETRNLAEKQRIKVFDEDRLEDLLITSTKRPNRLEGMNNISSREDLIK
ALTNLGYTIRENARIKGRSGISHVFDVVASDINTENYTLGIDILKKQPAL
ELQDVALFDAKAFDCGISDKVIATTAKITPDAQQFADAQKVKLIKLNPIP
ISTEESAAITTAEEVVKTSAKTESKNGKPAITDLRQSPRPEALKLIPEVL
ARRYTAIPLNIVGNTLEMAMADPSDILALEAFSAHSKRRIKPIPADAREI
RESIDFNYKGYGDIEKYLSRMSIPSEITDDRLAIDAAIDAPLAQALNLII
EEAVKARSSDVHIEPNEDRLRVRFRIDGTLQDMMSLPITAHRAIISRIKI
LGDMNIADHFHALDGQFSVNAGGREIDIRAATAPTVNGEMSVLRLLDKSR
ATIELSQLGFLPESLEKYNKMLKVPYGMILISGPTGAGKTTTLYASINSL
DIMRQNIITIEDPAEYRFKDINQIQVNVQAGITFASGLRSILRLDPDVIL
VGEIRDSETANIAVQAALTGHLMLSSIHANNTTGVLYRLIDLGVEPFLIA
SAVVGVVAQRMVRRVCPYCQHTIEVPVIEQVAYEREIGEKRTKFVYGSGC
KSCAFTGYLGRVGLFEIMSISDELRRLMLSGASPSEIHNQAIKDGMITMM
KDGMLKVKDNVTTPSEVLRSAYSPEEQY
>cbdbA1303 pilC, pilin biogenesis protein
MDFNYVAYGQDKRLVKGKIPATSMEAAQRLLSHSGYQILSIKPLTPFFNT
AGSFNFSKVKPREVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREI
IGEIVNDIRGGSSLSLAMSKHPKAFPPLYHRVIAAGEQGGSLEVVLRNLA
SFVQRNVETEKKVKSALTYPGVVAVVGILVLLLMVTFVLPAFTSLYSQMG
TELPTPTRILIGLSDFFESWGLYVIGIFIIAVTALVIYMRTPMGRYHRDR
IALKLPVIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLI
SNALADVQHDLIRGEGLSRPMTKNPLFLPMMVQMVSVGEETGKLDDTLAT
VSATYDTETDDRISAAIGMIQPVMTIAIGLVVGFIAVALVSSMYSLYGQI
G
>cbdbA873 pilT, twitching mobility protein
MRADELLKIAVDKKASDLHLRVPNPPVLRIDGALQPQTDWPVMYNKAIEQ
ILEEITTPEQREVFYAEKELDFAYSVPGVARFRVNVMRQRGSISIAFRQV
PFQIRSIDELGVPQICKELILKPRGLILITGPTGSGKSTTMAAMVDHLNR
TDARNIITIEDPIEYLYTNNRCIIAQRDLGDDTKSFSTALKHALRHDPDV
ILVGEMRDLETISTAISAAETGHLVVGTLHTTDAPQTIDRLIDIFPPDQQ
QQIRMQLSLVIEAVLVQTLLPKLGGKGRVAAFEIMVANTAVRNLIRDKKA
HELHNVMQLSVKDGMQTLDQSLANLVRQNMVSMEEALLKSSYPERLQKLL
QYQQTKQNPF
>cbdbA1178 pilT, twitching mobility protein
MIEIYELLKLVVDKDASDLHIKAPTSPVLRINGDLIRQPQYPPITPEDAE
QIFKSITTPHQQEVFASDNELDFVYSVTNLARFRVNVLRQRGSLSLAFRV
VPFVIRNVDELNLPPILKSLIIRPRGLLLVTGPTGSGKSTTQAAMIEHLN
NCRRSNVITIEDPIEYLFHDNECIISQRELGGDTRSFAIALKHALRHDPN
VIVIGEMRDLETISTAIAAAETGHLVIGTLHTTDAPQTVDRLIDMFPPSQ
QQQIRLQLSQVLEAIISQTLIPRMDNKGRVAAFEILIANNAARNLIREGK
TFELLTVMQLGKNDGMQTLDNELTRLAKEGIISVENAVLKSSNPERLRKS
LSNLGHGA
>cbdbA1310 pilT, twitching mobility protein
MDVIKLIYEAEEKKGSDLHLVAQSPPLVRVRGDLEALNGYEQLQPADIKT
AFEQLTTHEERETFYQEWELDFGYSLDGVGRLRCNAAMQRGAISLAIRLL
PPNIPTISELELPDICQKLVTKPRGLVIVTGPTGSGKSTTLAAMIQHLNN
TESKHVVTIEDPIEYVHPCIKCAVTQRQLGSDTLSFGHALKHVLRQNPDV
IMVGEMRDLDTAAAVLTIAETGHLVLSTSHAPSAYQALERIIDLFPPHER
HLAQTRLASLIEGVLCQTLIPRSNTDGRIVAVEIMLGSPAVRNLIREGKF
YQLPNVIRTSHDEGMITMDEALVELYRQQVISRENLFNYCQDASEVEKLI
NSSPSSQKRKKLIENSKSLLF