TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-14 20:48:40

Gene list

Applied filters:

COG category: Cell wall/membrane biogenesis
Genomic element: chromosome

Number of genes found: 166

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Saccharophagus degradans 2-40, 2-40
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Sde_3798 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS4797422 1263 - 0.437055
NA Sde_2449 Outer membrane protein-likechromosome CDS3096455 1434 - 0.495816
NA Sde_1100 lipopolysaccharide heptosyltransferase-1, putativechromosome CDS1412734 1062 - 0.483051
NA Sde_0603 bifunctional penicillin-binding protein 1Cchromosome CDS760473 2424 + 0.520627
NA Sde_3254 transcriptional regulator, GntR familychromosome CDS4153099 630 + 0.528571
NA Sde_0132 putative polysaccharide export protein, outer membranechromosome CDS163930 621 + 0.487923
NA Sde_2585 Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS3279674 777 - 0.477477
NA Sde_1293 Poly(R)-hydroxyalkanoic acid synthase, class Ichromosome CDS1658124 1293 + 0.463264
NA Sde_0071 Outer membrane protein/protective antigen OMA87-likechromosome CDS89135 1842 - 0.482085
NA Sde_3797 Undecaprenyl-phosphategalactosephosphotransferasechromosome CDS4796478 681 - 0.43906
NA Sde_2989 Ricin B lectinchromosome CDS3798591 1425 + 0.422456
NA Sde_1958 Aconitate hydratase 1chromosome CDS2463117 1269 - 0.532703
NA Sde_1252 lipoprotein NlpDchromosome CDS1602290 783 + 0.471264
NA Sde_0246 conserved hypothetical proteinchromosome CDS310589 858 + 0.440559
NA Sde_4011 glucose inhibited division protein Bchromosome CDS5049923 672 - 0.49256
NA Sde_2670 N-acetylmuramoyl-L-alanine amidasechromosome CDS3386354 1344 - 0.470238
NA Sde_2622 Cellulose binding, type IVchromosome CDS3318321 876 - 0.512557
NA Sde_0848 Undecaprenyldiphospho-muramoylpentapeptidebeta-N-chromosome CDS1101473 1170 + 0.482906
NA Sde_1477 extracellular solute-binding protein, family 3chromosome CDS1898937 1506 - 0.450863
NA Sde_0256 hypothetical proteinchromosome CDS320556 1683 + 0.442068
NA Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-likechromosome CDS2258260 2439 - 0.450184
NA Sde_3249 Rhs family protein-likechromosome CDS4139754 7542 - 0.44219
NA Sde_0131 Undecaprenyl-phosphategalactosephosphotransferasechromosome CDS162437 1410 + 0.487234
NA Sde_0842 Peptidoglycan glycosyltransferasechromosome CDS1093152 1707 + 0.49092
NA Sde_0485 putative glycosyl transferasechromosome CDS597173 1416 - 0.485876
NA Sde_3791 Glycosyltransferases involved in cell wall biogenesis-likechromosome CDS4789454 954 - 0.406709
NA Sde_0825 Mutator MutTchromosome CDS1075024 2334 + 0.494859
NA Sde_0869 response regulator receiver domain protein (CheY-like)chromosome CDS1125882 1122 - 0.434046
NA Sde_2512 Periplasmic protein TonB links inner and outer membranes-likechromosome CDS3182790 1236 + 0.464401
NA Sde_0844 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligasechromosome CDS1096411 1377 + 0.487291
NA Sde_1848 NAD-dependent DNA ligasechromosome CDS2338168 588 - 0.447279
NA Sde_0143 Glycosyltransferase-likechromosome CDS176120 1116 + 0.451613
NA Sde_0435 5,10-methylenetetrahydrofolate reductasechromosome CDS537817 1029 + 0.385811
NA Sde_1434 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthasechromosome CDS1852727 1113 + 0.455526
NA Sde_0618 Oligopeptide transporter OPTchromosome CDS780820 1008 - 0.47619
NA Sde_0266 Small-conductance mechanosensitive channel-likechromosome CDS332263 1518 - 0.430171
NA Sde_0386 3-deoxy-D-manno-octulosonic-acid (KDO) transferasechromosome CDS475843 1284 - 0.492212
NA Sde_3766 cation efflux system proteinchromosome CDS4766007 1248 + 0.487179
NA Sde_2133 ATPasechromosome CDS2723070 1056 - 0.444129
NA Sde_2229 conserved hypothetical proteinchromosome CDS2832761 1062 - 0.455744
NA Sde_0699 Periplasmic protease-likechromosome CDS904988 1515 + 0.444884
NA Sde_0586 OmpA domain proteinchromosome CDS724500 1146 + 0.45637
NA Sde_3339 Zn-finger, DksA/TraR C4 typechromosome CDS4267002 1026 - 0.489279
NA Sde_3309 Protein of unknown function DUF163chromosome CDS4221368 513 + 0.48538
NA Sde_3304 apolipoprotein N-acyltransferasechromosome CDS4214445 1566 + 0.501277
NA Sde_1988 DNA polymerase 3, epsilon subunitchromosome CDS2497816 2613 - 0.432836
NA Sde_1694 periplasmic chaperone LolAchromosome CDS2165801 627 + 0.414673
NA Sde_2588 hypothetical proteinchromosome CDS3281998 507 - 0.408284
NA Sde_3368 putative D,D-carboxypeptidase-related proteinchromosome CDS4295998 660 - 0.495455
NA Sde_2119 glycosyl transferase, group 2 family proteinchromosome CDS2708035 762 - 0.387139
NA Sde_0914 Alanine racemasechromosome CDS1179342 1230 + 0.539837
NA Sde_0854 UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS1108779 912 + 0.445175
NA Sde_0119 hypothetical proteinchromosome CDS150254 570 - 0.484211
NA Sde_2131 Sigma-70 factorchromosome CDS2720245 1077 - 0.390901
NA Sde_2589 Dihydrodipicolinate synthase subfamilychromosome CDS3282556 2691 - 0.450762
NA Sde_2563 Elongation factor Tschromosome CDS3252735 936 - 0.522436
NA Sde_0876 Prolyl-tRNA synthetasechromosome CDS1135167 600 + 0.475
NA Sde_1778 Lipoprotein releasing system, transmembrane protein, LolC/E familychromosome CDS2268126 2010 - 0.490547
NA Sde_2123 CheW proteinchromosome CDS2711718 885 - 0.376271
NA Sde_1428 Uncharacterized protein involved in outer membrane biogenesis-likechromosome CDS1846295 2136 - 0.440543
NA Sde_3020 hypothetical proteinchromosome CDS3846071 8289 - 0.422367
NA Sde_2118 HAD-superfamily hydrolase subfamily IAchromosome CDS2707271 768 - 0.372396
NA Sde_2056 UDP-N-acetylmuramate dehydrogenasechromosome CDS2635921 1044 - 0.443487
NA Sde_3170 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS4046757 1263 - 0.505938
NA Sde_2895 Helix-turn-helix, AraC typechromosome CDS3671272 795 + 0.442767
NA Sde_1110 Surface lipoprotein-likechromosome CDS1438734 777 + 0.491634
NA Sde_2220 conserved hypothetical protein, predicted glycosyl transferase family 2chromosome CDS2821191 687 - 0.442504
NA Sde_1921 Cation efflux proteinchromosome CDS2422281 828 + 0.449275
NA Sde_2692 penicillin-binding proteinchromosome CDS3416329 2541 + 0.499803
NA Sde_2545 putative mRNA-binding proteinchromosome CDS3227738 984 + 0.488821
NA Sde_0161 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis-likechromosome CDS198963 1128 + 0.492908
NA Sde_0148 Glycoside hydrolase, family 10chromosome CDS182788 1335 + 0.344569
NA Sde_1791 small-conductance mechanosensitive channelchromosome CDS2282468 1110 + 0.437838
NA Sde_2134 Flagellar biosynthesis protein FlhAchromosome CDS2724273 1395 - 0.470968
NA Sde_2614 TonB-like periplasmic proteinchromosome CDS3311155 630 - 0.45873
NA Sde_3338 Sugar fermentation stimulation proteinchromosome CDS4266066 894 - 0.542506
NA Sde_2115 DNA gyrase, subunit Achromosome CDS2703010 1167 - 0.446444
NA Sde_3174 Arabinose-5-phosphate isomerasechromosome CDS4050496 972 + 0.539095
NA Sde_0152 hypothetical proteinchromosome CDS188819 1170 - 0.384615
NA Sde_0840 S-adenosyl-methyltransferase MraWchromosome CDS1091819 939 + 0.479233
NA Sde_0561 Surface lipoprotein-likechromosome CDS691785 879 + 0.477816
NA Sde_0619 Cellulose binding, type IVchromosome CDS781831 1284 - 0.504673
NA Sde_3002 TonB-dependent receptorchromosome CDS3826588 1893 - 0.453249
NA Sde_2466 Cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS3117042 1281 - 0.433255
NA Sde_1613 Glutamate racemasechromosome CDS2074704 819 - 0.503053
NA Sde_1772 putative glycosyltransferase transmembrane proteinchromosome CDS2262411 1044 - 0.462644
NA Sde_1296 peptidase, M23/M37 familychromosome CDS1685641 831 + 0.499398
NA Sde_2427 putative outer membrane proteinchromosome CDS3072544 969 - 0.51806
NA Sde_0123 Sortase (surface protein transpeptidase)-likechromosome CDS155086 735 + 0.563265
NA Sde_3910 conserved hypothetical proteinchromosome CDS4929669 906 - 0.443709
NA Sde_0851 Chaperonin Cpn60/TCP-1chromosome CDS1105032 858 + 0.432401
NA Sde_3472 Small-conductance mechanosensitive channel-likechromosome CDS4422865 1092 + 0.417582
NA Sde_0585 conserved hypothetical small-conductance mechanosensitive channelchromosome CDS723554 834 + 0.429257
NA Sde_1771 conserved hypothetical proteinchromosome CDS2260831 1578 - 0.470849
NA Sde_0997 dTDP-4-dehydrorhamnose reductase-likechromosome CDS1279011 900 + 0.48
NA Sde_0850 D-alanine--D-alanine ligasechromosome CDS1104079 945 + 0.480423
NA Sde_3209 conserved hypothetical proteinchromosome CDS4085115 1221 + 0.459459
NA Sde_3341 PAS/PAC sensor signal transduction histidine kinasechromosome CDS4269232 1860 - 0.508602
NA Sde_3361 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS4288575 1368 - 0.516813
NA Sde_2655 Agarasechromosome CDS3365912 4008 - 0.458583
NA Sde_2082 Tfp pilus assembly protein FimV-likechromosome CDS2662284 3738 - 0.467095
NA Sde_3786 Uncharacterized protein involved in formation of curli polymers-likechromosome CDS4784663 966 + 0.460663
NA Sde_0366 putative secretion proteinchromosome CDS452979 1365 - 0.502564
NA Sde_0908 soluble lytic murein transglycosylase-likechromosome CDS1173172 528 - 0.482955
NA Sde_0135 glycosyl transferases-likechromosome CDS167440 960 + 0.411458
NA Sde_3041 Glutamine-fructose-6-phosphate transaminase (isomerizing)chromosome CDS3888106 1053 - 0.493827
NA Sde_3636 conserved hypothetical proteinchromosome CDS4614033 885 + 0.508475
NA Sde_3795 Cold shock proteinchromosome CDS4794160 1302 - 0.481567
NA Sde_3402 hypothetical proteinchromosome CDS4337666 1296 - 0.463735
NA Sde_0349 prolipoprotein diacylglyceryl transferasechromosome CDS434257 825 + 0.507879
NA Sde_3191 Twin-arginine translocation protein TatA/Echromosome CDS4068402 765 - 0.537255
NA Sde_0492 C-terminal processing peptidasechromosome CDS604224 1389 - 0.516919
NA Sde_1725 diacylglycerol kinasechromosome CDS2198558 360 + 0.480556
NA Sde_0849 UDP-N-acetylmuramate-alanine ligasechromosome CDS1102635 1425 + 0.484912
NA Sde_3719 Phosphate transport system permease protein 1chromosome CDS4706520 891 + 0.526375
NA Sde_1087 3'-5' exoribonuclease, VacB and RNase IIchromosome CDS1389354 1383 - 0.494577
NA Sde_0160 glycosyl transferase, group 2 family proteinchromosome CDS197824 1140 + 0.476316
NA Sde_0144 Glycosyltransferase-likechromosome CDS177254 1107 + 0.428184
NA Sde_3408 aminoglycoside phosphotransferase-likechromosome CDS4343737 792 + 0.426768
NA Sde_0157 Glycosyltransferase-likechromosome CDS194498 1209 - 0.427626
NA Sde_2058 Chorismate synthasechromosome CDS2637538 768 - 0.457031
NA Sde_2024 Low molecular weight phosphotyrosine protein phosphatasechromosome CDS2548465 1632 + 0.467524
NA Sde_3337 Serine-type D-Ala-D-Ala carboxypeptidasechromosome CDS4264763 1182 - 0.498308
NA Sde_0843 N-acetylmuramoyl-L-alanine amidase, family 2chromosome CDS1094855 1557 + 0.466924
NA Sde_0285 conserved hypothetical proteinchromosome CDS354273 1095 - 0.432877
NA Sde_2587 UDP-3-O-(3-hydroxylauroylchromosome CDS3280944 1026 - 0.45809
NA Sde_0742 Transaldolase ABchromosome CDS958648 693 + 0.53824
NA Sde_0419 dolichyl-phosphate mannose synthasechromosome CDS517323 837 + 0.44325
NA Sde_2116 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2705111 960 - 0.423958
NA Sde_2590 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferasechromosome CDS3285312 1401 - 0.481085
NA Sde_2528 peptidoglycan-associated lipoproteinchromosome CDS3200801 492 - 0.449187
NA Sde_2117 Ubiquinone biosynthesis O-methyltransferasechromosome CDS2706147 1125 - 0.426667
NA Sde_1576 ClpX, ATPase regulatory subunitchromosome CDS2024224 2502 - 0.483613
NA Sde_2402 conserved hypothetical proteinchromosome CDS3046208 840 + 0.45
NA Sde_3959 UDP-N-acetylglucosamine diphosphorylasechromosome CDS4988895 1356 - 0.478614
NA Sde_2584 Lipid-A-disaccharide synthasechromosome CDS3278486 1167 - 0.472151
NA Sde_3741 putative glycosyltransferasechromosome CDS4741223 828 - 0.437198
NA Sde_0740 organic solvent tolerance protein, putativechromosome CDS954667 2583 - 0.532327
NA Sde_1244 Fructose-bisphosphate aldolase, class IIchromosome CDS1595283 852 + 0.457746
NA Sde_2121 Glycosyltransferase-likechromosome CDS2709962 1176 - 0.390306
NA Sde_0846 UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS1098911 1371 + 0.473377
NA Sde_0845 Phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS1097787 1083 + 0.446907
NA Sde_0286 hypothetical proteinchromosome CDS355736 1641 + 0.449116
NA Sde_0145 conserved hypothetical proteinchromosome CDS178362 1245 + 0.428112
NA Sde_2617 OmpA family proteinchromosome CDS3314136 678 - 0.483776
NA Sde_3802 glucosyltransferasechromosome CDS4802631 1026 + 0.439571
NA Sde_3520 Glycosyltransferases involved in cell wall biogenesis-likechromosome CDS4474633 972 + 0.443416
NA Sde_3740 lipopolysaccharide core biosynthesis mannosyltransferasechromosome CDS4740139 1050 - 0.489524
NA Sde_0855 Fe-S type hydro-lyases tartrate/fumarate alpha regionchromosome CDS1110048 933 + 0.511254
NA Sde_1000 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS1282263 825 + 0.442424
NA Sde_2615 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component-likechromosome CDS3311890 1404 - 0.452991
NA Sde_0734 ATPasechromosome CDS949241 1020 + 0.498039
NA Sde_0147 Helix-turn-helix, AraC typechromosome CDS181595 1188 + 0.382155
NA Sde_0356 periplasmic protein TonBchromosome CDS439959 600 + 0.47
NA Sde_2128 CheW proteinchromosome CDS2717311 1137 - 0.365875
NA Sde_2570 conserved hypothetical OmpA family proteinchromosome CDS3261092 693 + 0.463203
NA Sde_3190 rod shape-determining protein MreDchromosome CDS4067905 489 - 0.470348
NA Sde_1929 outer membrane efflux proteinchromosome CDS2430413 1344 + 0.473214
NA Sde_1994 C-terminal processing peptidasechromosome CDS2508503 2112 + 0.446496
NA Sde_0668 putative salt-induced outer membrane proteinchromosome CDS852720 780 + 0.424359
NA Sde_0868 Ribonuclease BNchromosome CDS1124909 957 - 0.414838
NA Sde_2130 response regulator receiver domain protein (CheY-like)chromosome CDS2719367 867 - 0.404844
NA Sde_3948 PDZ/DHR/GLGFchromosome CDS4976518 1836 - 0.480392
NA Sde_0493 ATPasechromosome CDS605660 1125 - 0.48
NA Sde_2113 3-phosphoshikimate 1-carboxyvinyltransferasechromosome CDS2700189 1086 - 0.418048
NA Sde_3591 HAD-superfamily hydrolase subfamily IA, variant 3chromosome CDS4550837 1143 - 0.468066