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2024-05-20 11:50:31

Gene list

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COG category: Cell wall/membrane biogenesis
Genomic element: chromosome

Number of genes found: 105

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Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PMM1259 pyridoxal-phosphate-dependent aminotransferaseSubName: Full=Pyridoxal-phosphate-dependent aminotransferase; chromosome CDS1212680 1167 + 0.311911
NA PMM1221 Glycosyl transferase, group 1SubName: Full=Glycosyl transferase, group 1; EC=2.4.1.-; chromosome CDS1170519 1101 + 0.258856
NA PMM0752 Glycosyl transferase, family 2SubName: Full=Glycosyl transferase, family 2; chromosome CDS712410 918 + 0.308279
NA PMM1522 Glycosyl transferase, family 2SubName: Full=Glycosyl transferase, family 2; chromosome CDS1460832 963 - 0.29595
NA PMM1189 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1135214 1080 + 0.323148
NA PMM0718 possible Bacterial regulatory proteins, crp faSubName: Full=Possible Bacterial regulatory proteins, crp fa; chromosome CDS682867 537 + 0.208566
NA PMM1041 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS984821 585 + 0.292308
NA PMM0761 putative carboxypeptidaseSubName: Full=Putative carboxypeptidase; chromosome CDS724669 732 + 0.286885
NA PMM0915 putative lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS875954 462 + 0.190476
NA PMM1659 Glycosyl transferase, family 2SubName: Full=Glycosyl transferase, family 2; Flags: Precursor; chromosome CDS1591512 1302 - 0.301843
NA PMM0330 possible LysM domainSubName: Full=Possible LysM domain; chromosome CDS319348 762 - 0.249344
NA PMM0040 Putative penicillin-binding proteinSubName: Full=Putative penicillin-binding protein; Flags: Precursor; chromosome CDS38231 1791 + 0.315466
NA PMM0171 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; chromosome CDS164984 903 - 0.316722
NA PMM1211 possible polysaccharide export or synthesis proteinSubName: Full=Possible polysaccharide export or synthesis protein; Flags: Precursor; chromosome CDS1160596 1167 + 0.263068
NA PMM0748 possible ABC transporter componentSubName: Full=Possible ABC transporter component; Flags: Precursor; chromosome CDS709356 918 + 0.303922
NA PMM0635 small mechanosensitive ion channel, MscS familySubName: Full=Small mechanosensitive ion channel, MscS family; chromosome CDS603999 1032 - 0.271318
NA PMM1207 Putative fucose synthetaseRecName: Full=GDP-L-fucose synthase; EC=1.1.1.271; AltName: Full=GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; chromosome CDS1156082 954 - 0.292453
NA PMM1213 Glycosyl transferases group 1SubName: Full=Glycosyl transferases group 1; chromosome CDS1162468 1161 - 0.242033
NA PMM1219 putative nucleoside-diphosphate sugar epimeraseSubName: Full=Putative nucleoside-diphosphate sugar epimerase; chromosome CDS1168587 948 + 0.290084
NA PMM1139 possible membrane fusion proteinSubName: Full=Possible membrane fusion protein; Flags: Precursor; chromosome CDS1089194 1062 + 0.305085
NA PMM1377 similar to dihydroflavonol-4-reductaseSubName: Full=Similar to dihydroflavonol-4-reductase; chromosome CDS1324267 996 + 0.341365
NA PMM0616 Cell wall hydrolase/autolysinSubName: Full=Cell wall hydrolase/autolysin; Flags: Precursor; chromosome CDS586724 1089 + 0.331497
NA PMM0152 Putative sugar-phosphate nucleotidyl transferaseSubName: Full=Putative sugar-phosphate nucleotidyl transferase; chromosome CDS149447 1179 + 0.347752
NA PMM0866 possible SMC domain N terminal domainSubName: Full=Possible SMC domain N terminal domain; chromosome CDS822421 489 - 0.210634
NA PMM1338 chloroplast outer envelope membrane protein homologSubName: Full=Chloroplast outer envelope membrane protein homolog; Flags: Precursor; chromosome CDS1287534 2142 - 0.332866
NA PMM0029 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS29363 888 - 0.298423
NA PMM0427 putative penicillin binding proteinSubName: Full=Putative penicillin binding protein; chromosome CDS406258 1764 - 0.276077
NA PMM0757 D-ala-D-ala dipeptidaseSubName: Full=D-ala-D-ala dipeptidase; chromosome CDS718507 687 + 0.30131
NA PMM0647 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS617617 258 + 0.25969
NA PMM1254 putative glycosyl transferase, family 2SubName: Full=Putative glycosyl transferase, family 2; chromosome CDS1206280 975 - 0.290256
NA PMM0397 possible Glycosyl transferase, group 1SubName: Full=Possible Glycosyl transferase, group 1; chromosome CDS375753 1167 - 0.330763
NA PMM0097 possible RND family outer membrane efflux proteinSubName: Full=Possible RND family outer membrane efflux protein; chromosome CDS99535 1431 - 0.263452
NA PMM1227 putative UDP-N-acetylglucosamine-1-phosphate transferaseSubName: Full=Putative UDP-N-acetylglucosamine-1-phosphate transferase; chromosome CDS1178446 978 - 0.269939
NA PMM1210 Putative nucleotide sugar epimeraseSubName: Full=Putative nucleotide sugar epimerase; EC=5.1.3.-; chromosome CDS1159390 1026 - 0.308967
NA PMM0582 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS546886 984 - 0.310976
NA PMM1177 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS1124366 1806 - 0.326135
NA PMM1260 Nucleoside-diphosphate-sugar epimeraseSubName: Full=Nucleoside-diphosphate-sugar epimerase; chromosome CDS1213939 936 + 0.307692
NA PMM1379 putative dape gene and orf2SubName: Full=Putative dape gene and orf2; chromosome CDS1327594 885 + 0.296045
NA PMM1197 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS1143639 1362 + 0.26138
NA PMM1223 putative glycosyl transferase, group 1SubName: Full=Putative glycosyl transferase, group 1; chromosome CDS1172611 1149 + 0.246301
NA PMM1518 conserved hypothetical proeinSubName: Full=Conserved hypothetical proein; chromosome CDS1458799 756 + 0.260582
NA PMM1308 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS1261299 726 + 0.258953
NA PMM1222 possible glycosyl transferaseSubName: Full=Possible glycosyl transferase; chromosome CDS1171619 984 + 0.239837
NA PMM1497 Glycosyl transferase, family 2SubName: Full=Glycosyl transferase, family 2; chromosome CDS1435827 1092 + 0.279304
NA PMM1178 Glycosyl transferases group 1SubName: Full=Glycosyl transferases group 1; Flags: Precursor; chromosome CDS1126168 1095 - 0.319635
NA PMM0962 possible Vng0271cSubName: Full=Possible Vng0271c; chromosome CDS920161 1227 + 0.335778
NA PMM1496 Dolichyl-phosphate-mannose-proteinmannosyltransferaseSubName: Full=Dolichyl-phosphate-mannose-protein mannosyltransferase; chromosome CDS1434244 1548 + 0.264858
NA PMM1202 possible nucleoside-diphosphate-sugar epimeraseSubName: Full=Possible nucleoside-diphosphate-sugar epimerase; chromosome CDS1150171 855 - 0.290058
NA PMM0059 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS64160 1290 - 0.289922
NA PMM1238 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1189454 1008 + 0.234127
NA PMM1220 putative glycosyl transferaseSubName: Full=Putative glycosyl transferase; Flags: Precursor; chromosome CDS1169558 960 + 0.246875
NA PMM1200 Glycosyl transferase, family 2SubName: Full=Glycosyl transferase, family 2; EC=2.4.1.83; chromosome CDS1148064 954 - 0.309224
NA PMM1292 possible apolipoprotein n-acyltransferaseRecName: Full=Apolipoprotein N-acyltransferase; Short=ALP N-acyltransferase; EC=2.3.1.-; chromosome CDS1243947 1491 - 0.307847
NA PMM1216 Putative sugar-phosphate nucleotidyl transferaseSubName: Full=Putative sugar-phosphate nucleotidyl transferase; chromosome CDS1165667 720 + 0.268056
NA PMM1201 Putative CDP-tyvelose-2-epimerase (RfbE)SubName: Full=Putative CDP-tyvelose-2-epimerase (RfbE); EC=5.1.3.-; chromosome CDS1149095 1050 - 0.300952
NA PMM1257 possible dTDP-glucose 4,6-dehydrataseSubName: Full=Possible dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; chromosome CDS1210385 990 - 0.287879
NA PMM1256 putative glycosyl transferase, family 2SubName: Full=Putative glycosyl transferase, family 2; chromosome CDS1209114 879 - 0.287827
NA PMM1205 NDP-hexose 3,4-dehydrataseSubName: Full=NDP-hexose 3,4-dehydratase; chromosome CDS1152958 1200 - 0.305833
NA PMM1258 pyridoxal-phosphate-dependent aminotransferaseSubName: Full=Pyridoxal-phosphate-dependent aminotransferase; chromosome CDS1211578 1149 + 0.319408
NA PMM0677 carboxyl-terminal processing proteaseSubName: Full=Carboxyl-terminal processing protease; EC=3.4.21.-; chromosome CDS645013 1290 + 0.307752
NA PMM0563 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS530222 684 - 0.27193
NA PMM0797 possible mRNA binding proteinSubName: Full=Possible mRNA binding protein; chromosome CDS757849 921 + 0.273616
alr PMM1527 putative Alanine racemaseRecName: Full=Alanine racemase; EC=5.1.1.1; chromosome CDS1469701 1188 - 0.309764
ctpA PMM0324 carboxyl-terminal processing proteinase precursorSubName: Full=Carboxyl-terminal processing proteinase; EC=3.4.21.-; Flags: Precursor; chromosome CDS308446 1290 - 0.345736
dacB, pbp PMM0885 putative D-Ala-D-Ala carboxypeptidase 3 (S13) familySubName: Full=Putative D-Ala-D-Ala carboxypeptidase 3 (S13) family; EC=3.4.16.4; chromosome CDS845218 972 - 0.264403
dapA PMM1653 Dihydrodipicolinate synthetaseRecName: Full=4-hydroxy-tetrahydrodipicolinate synthase; Short=HTPA synthase; EC=4.3.3.7; chromosome CDS1584044 909 - 0.366337
ddhA, rfbF PMM1204 glucose-1-phosphate cytidylyltransferaseSubName: Full=Glucose-1-phosphate cytidylyltransferase; EC=2.7.7.33; chromosome CDS1152143 768 - 0.348958
ddlA PMM1306 D-alanine--D-alanine ligaseRecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; chromosome CDS1259813 1068 + 0.291198
degT PMM0284 putative pleiotropic regulatory proteinSubName: Full=Putative pleiotropic regulatory protein; chromosome CDS273321 1206 + 0.309287
dgkA PMM0183 Prokaryotic diacylglycerol kinaseSubName: Full=Prokaryotic diacylglycerol kinase; EC=2.7.1.107; Flags: Precursor; chromosome CDS175302 417 + 0.2494
ftsI PMM0518 putative peptidoglycan synthetase (pbp transpeptidase domain)SubName: Full=Putative peptidoglycan synthetase (Pbp transpeptidase domain); Flags: Precursor; chromosome CDS488884 1752 + 0.320776
galE PMM1209 UDP-glucose-4-epimeraseSubName: Full=UDP-glucose-4-epimerase; EC=5.1.3.2; chromosome CDS1158248 1092 - 0.28663
gidB PMM1475 putative glucose inhibited division protein BRecName: Full=Ribosomal RNA small subunit methyltransferase G; EC=2.1.1.-; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase; chromosome CDS1408674 720 + 0.281944
glmS PMM1606 Glutamine--fructose-6-phosphate transaminase (isomerizing)RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; chromosome CDS1535851 1896 - 0.327532
glmU PMM0611 UDP-N-acetylglucosamine pyrophosphorylaseRecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; chromosome CDS581401 1350 - 0.305926
gmd PMM1208 GDPmannose 4,6-dehydrataseRecName: Full=GDP-mannose 4,6-dehydratase; EC=4.2.1.47; AltName: Full=GDP-D-mannose dehydratase; chromosome CDS1157069 1074 - 0.328678
gumB PMM1224 putative polysaccharide export proteinSubName: Full=Putative polysaccharide export protein; Flags: Precursor; chromosome CDS1174288 1056 - 0.283144
lepA PMM0420 GTP-binding protein LepARecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; chromosome CDS398179 1809 + 0.341625
lpxA PMM1335 UDP-N-acetylglucosamine acyltransferaseSubName: Full=UDP-N-acetylglucosamine acyltransferase; EC=2.3.1.129; chromosome CDS1285386 843 - 0.313167
lpxB PMM1334 Lipid-A-disaccharide synthetaseSubName: Full=Lipid-A-disaccharide synthetase; EC=2.4.1.182; chromosome CDS1284211 1179 - 0.289228
lpxC PMM1337 UDP-3-0-acyl N-acetylglucosamine deacetylaseSubName: Full=UDP-3-0-acyl N-acetylglucosamine deacetylase; EC=3.5.1.-; chromosome CDS1286697 837 - 0.317802
lpxD PMM0787 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferaseRecName: Full=UDP-3-O-acylglucosamine N-acyltransferase; EC=2.3.1.-; chromosome CDS748841 1035 - 0.298551
lytB PMM0264 LytB protein homologRecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; chromosome CDS254182 1197 + 0.319967
menC PMM0175 putative O-succinylbenzoate synthaseSubName: Full=Putative O-succinylbenzoate synthase; chromosome CDS168789 966 - 0.281574
mraY PMM1709 Putativephospho-N-acetylmuramoyl-pentapeptide-transferaseRecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; chromosome CDS1646698 1080 + 0.25
mreC PMM1621 putative rod shape-determining proteinSubName: Full=Putative rod shape-determining protein; Flags: Precursor; chromosome CDS1550453 750 - 0.310667
murB PMM0021 UDP-N-acetylenolpyruvoylglucosamine reductaseRecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; chromosome CDS21634 891 - 0.294052
murC PMM0022 Probable UDP-N-acetylmuramate-alanine ligaseRecName: Full=UDP-N-acetylmuramate--L-alanine ligase; EC=6.3.2.8; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; chromosome CDS22532 1422 - 0.26301
murD PMM1364 UDP-N-acetylmuramoylalanine--D-glutamateligaseRecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; chromosome CDS1311601 1422 + 0.291842
murE PMM0413 UDP-N-acetylmuramyl-tripeptide synthetaseRecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; EC=6.3.2.13; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; chromosome CDS391211 1536 + 0.295573
murF PMM0610 Cytoplasmic peptidoglycan synthetaseRecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; EC=6.3.2.10; chromosome CDS580028 1371 + 0.272794
murG PMM0197 Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferaseRecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; chromosome CDS190852 1095 + 0.261187
murI PMM0617 Putative aspartate and glutamate racemases:Glutamate racemaseRecName: Full=Glutamate racemase; EC=5.1.1.3; chromosome CDS587809 795 + 0.262893
putative murA PMM1300 UDP-N-glucosamine 1-carboxyvinyltransferaseRecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT; chromosome CDS1251103 1374 + 0.329694
rfaE PMM1218 putative ADP-heptose synthaseSubName: Full=Putative ADP-heptose synthase; EC=2.7.-.-; chromosome CDS1167016 1503 + 0.301397
rfbD PMM1233 putative dTDP-4-dehydrorhamnose reductaseSubName: Full=Putative dTDP-4-dehydrorhamnose reductase; EC=1.1.1.133; chromosome CDS1185213 840 + 0.233333
rfbG PMM1203 CDP-glucose 4,6-dehydrataseSubName: Full=CDP-glucose 4,6-dehydratase; EC=4.2.1.45; chromosome CDS1151041 1083 - 0.297322
som PMM0709 possible porinSubName: Full=Possible porin; Flags: Precursor; chromosome CDS674137 1359 - 0.395879
sps PMM1711 Sucrose phosphate synthaseSubName: Full=Sucrose phosphate synthase; EC=2.4.1.14; chromosome CDS1647967 1407 - 0.314144
sqdB PMM1665 sulfolipid (UDP-sulfoquinovose) biosynthesis proteinSubName: Full=Sulfolipid (UDP-sulfoquinovose) biosynthesis protein; chromosome CDS1596609 1194 + 0.340871
sqdX PMM1666 SqdXSubName: Full=SqdX; chromosome CDS1597831 1134 + 0.361552
ugd PMM1261 UDP-glucose 6-dehydrogenaseSubName: Full=UDP-glucose 6-dehydrogenase; EC=1.1.1.22; chromosome CDS1214864 1425 + 0.30807
ycf39 PMM0801 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS760257 660 - 0.293939
ycf39 PMM1152 putative chaperon-like protein for quinone binding in photosystem IISubName: Full=Putative chaperon-like protein for quinone binding in photosystem II; chromosome CDS1103512 963 - 0.340602
yvoC, lgt, umpA PMM0460 putative prolipoprotein diacylglyceryl transferaseRecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; chromosome CDS438912 894 - 0.287472