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2024-05-06 02:01:52

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough

Number of genes found: 203

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA DVU0411 heptosyltransferase family proteinchromosome CDS459998 1674 - 0.657109
NA DVU1464 heptosyltransferase family proteinchromosome CDS1542988 1236 + 0.668285
NA DVU3205 transglycosylase SLT domain proteinchromosome CDS3368755 1446 + 0.668741
NA DVUA0048 exopolysaccharide production protein, putativepDV CDS58360 1398 + 0.703147
NA DVU1673 acyltransferase, putativechromosome CDS1753258 843 + 0.60261
NA DVUA0076 ABC transporter, ATP-binding proteinpDV CDS102804 1395 - 0.597133
NA DVU2668 UDP-N-acetylglucosamine pyrophosphorylase, putativechromosome CDS2779417 1368 + 0.644737
NA DVU0786 penicillin-binding proteinchromosome CDS872482 1788 - 0.616331
NA DVU2455 NAD-dependent epimerase/dehydratase family proteinchromosome CDS2557897 951 + 0.560463
NA DVU2501 cell division protein FtsQ, putativechromosome CDS2612553 837 - 0.584229
NA DVU3176 UDP-glucose/GDP-mannose dehydrogenase family proteinchromosome CDS3332256 1323 + 0.65155
NA DVU2052 glycosyl transferase, group 2 family proteinchromosome CDS2129341 723 + 0.607192
NA DVU0074 polysaccharide biosynthesis domain proteinchromosome CDS90988 444 + 0.682432
NA DVU0144 cytidyltransferase-related domain proteinchromosome CDS179041 603 + 0.66335
NA DVU3188 NLP/P60 family proteinchromosome CDS3347482 720 - 0.668056
NA DVU3356 NAD-dependent epimerase/dehydratase family proteinchromosome CDS3527452 1008 + 0.598214
NA DVU1013 type I secretion outer membrane protein, TolC familychromosome CDS1115282 1371 - 0.592268
NA DVU0872 glycosyl transferase, group 2 family proteinchromosome CDS964110 768 - 0.621094
NA DVU0064 hypothetical proteinchromosome CDS75950 909 + 0.640264
NA DVU2336 carboxyl-terminal proteasechromosome CDS2431992 1287 - 0.634033
NA DVU0948 conserved hypothetical proteinchromosome CDS1042559 429 - 0.659674
NA DVU2373 outer membrane protein, OMP85 familychromosome CDS2468564 2376 - 0.603114
NA DVU3254 PDZ domain proteinchromosome CDS3426297 1365 + 0.698169
NA DVU1879 glycosyl transferase, group 1 family proteinchromosome CDS1947269 1101 - 0.647593
NA DVU3046 glycosyl transferase, group 1 family proteinchromosome CDS3171427 1107 - 0.680217
NA DVU0170 methyl-accepting chemotaxis proteinchromosome CDS211427 2070 + 0.642995
NA DVU0633 penicillin-binding proteinchromosome CDS699680 2424 - 0.650165
NA DVU0294 glycosyl transferase, group 2 family proteinchromosome CDS338182 2145 + 0.680186
NA DVU0635 dolichyl-phosphate-mannose-protein mannosyltransferase family proteinchromosome CDS702696 1587 - 0.664146
NA DVU1060 glycosyl transferase, group 1 family proteinchromosome CDS1160947 1104 - 0.653986
NA DVU2815 outer membrane efflux proteinchromosome CDS2918385 1611 - 0.666667
NA DVU2326 conserved domain proteinchromosome CDS2422922 903 - 0.662237
NA DVU2996 NAD-dependent epimerase/dehydratase family proteinchromosome CDS3106817 924 - 0.678571
NA DVU1128 lysozyme, putativechromosome CDS1230114 666 - 0.68018
NA DVU0292 hypothetical proteinchromosome CDS336275 1107 - 0.65673
NA DVU1956 heptosyltransferase family proteinchromosome CDS2029188 1056 - 0.658144
NA DVUA0046 glycosyl transferase, group 2 family proteinpDV CDS55465 1449 + 0.714286
NA DVU2390 TonB domain proteinchromosome CDS2492313 909 + 0.685369
NA DVUA0125 transglycosylase, SLT familypDV CDS163070 1353 + 0.702143
NA DVUA0071 glycosyl transferase, group 1/2 family proteinpDV CDS94115 2157 - 0.630505
NA DVU3140 capsular polysaccharide transport protein, putativechromosome CDS3287614 1614 - 0.646221
NA DVU0554 NAD-dependent epimerase/dehydratase family proteinchromosome CDS623355 939 + 0.505857
NA DVU0670 exopolysaccharide production protein, putativechromosome CDS742386 1272 + 0.562107
NA DVU3158 vacJ lipoprotein, putativechromosome CDS3315162 888 + 0.665541
NA DVU0544 hypothetical proteinchromosome CDS615721 402 + 0.584577
NA DVU0552 conserved hypothetical proteinchromosome CDS622064 966 + 0.498965
NA DVU2655 D-alanyl-D-alanine carboxypeptidase family proteinchromosome CDS2768362 1326 + 0.599548
NA DVU0327 exopolysaccharide biosynthesis protein, putativechromosome CDS370217 1266 - 0.633491
NA DVU0517 peptidase, M23/M37 familychromosome CDS590194 1833 + 0.704855
NA DVU1892 glycosyl transferase, group 2 family proteinchromosome CDS1964430 750 - 0.666667
NA DVU1536 transglycosylase, SLT familychromosome CDS1603093 1137 + 0.616535
NA DVU2817 multidrug resistance proteinchromosome CDS2923238 1254 - 0.675439
NA DVU1061 glycosyl transferase, group 1 family proteinchromosome CDS1162060 1062 - 0.640301
NA DVU1147 alginate o-acetyltransferase AlgI, putativechromosome CDS1241837 1380 + 0.425362
NA DVU0062 RND efflux system, outer membrane protein, NodT familychromosome CDS73877 1515 + 0.682508
NA DVU1242 vacJ lipoprotein, putativechromosome CDS1329456 822 - 0.605839
NA DVU3395 peptidase, M23/M37 familychromosome CDS3569404 1311 - 0.601068
NA DVU1687 glycosyl transferase, group 2 family proteinchromosome CDS1766095 708 + 0.586158
NA DVU1256 heptosyltransferase family proteinchromosome CDS1342002 1089 - 0.634527
NA DVU0690 conserved hypothetical proteinchromosome CDS764349 672 + 0.610119
NA DVU0351 cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis proteinchromosome CDS397873 1635 - 0.652599
NA DVU0134 glycosyl transferase, group 2 family proteinchromosome CDS170444 1038 - 0.680154
NA DVU1487 conserved domain proteinchromosome CDS1565472 429 - 0.585082
NA DVU0561 glycosyl transferase, group 1 family proteinchromosome CDS627172 1104 + 0.51087
NA DVU1537 lipoprotein, putativechromosome CDS1604359 567 + 0.59612
NA DVU0437 efflux transporter, RND family, MFP subunitchromosome CDS490755 1461 + 0.681725
NA DVU2428 lipoprotein, putativechromosome CDS2532467 459 - 0.660131
NA DVUA0039 chain length determinant family proteinpDV CDS46451 1503 + 0.652029
NA DVU0998 heptosyltransferase family proteinchromosome CDS1092123 1056 + 0.641098
NA DVUA0069 GtrA family protein, selenocysteine-containingpDV CDS90871 1158 - 0.593264
NA DVU2151 conserved hypothetical proteinchromosome CDS2250828 360 - 0.602778
NA DVUA0080 glycosyl transferase, group 2 family proteinpDV CDS106366 882 + 0.659864
NA DVU0125 hypothetical proteinchromosome CDS158213 1134 + 0.700176
NA DVU0954 organic solvent tolerance protein, putativechromosome CDS1047731 2295 - 0.610893
NA DVUA0037 sugar transferase domain proteinpDV CDS44190 1455 + 0.692784
NA DVU3104 peptidoglycan-associated lipoprotein, putativechromosome CDS3244295 504 + 0.613095
NA DVU1347 peptidase, M23/M37 familychromosome CDS1425518 915 + 0.642623
NA DVU2370 outer membrane protein OmpH, putativechromosome CDS2465783 528 - 0.623106
NA DVU3010 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS3122956 1179 + 0.673452
NA DVU0319 NAD-dependent epimerase/dehydratase family proteinchromosome CDS362485 1026 - 0.654971
NA DVU3006 polysaccharide biosynthesis protein/methyltransferase, putativechromosome CDS3118306 1362 + 0.673275
NA DVU2371 N-acetylmuramoyl-L-alanine amidase, putativechromosome CDS2466461 1632 - 0.625613
NA DVU0335 3-deoxy-D-manno-octulosonic-acid transferase, putativechromosome CDS378977 1593 + 0.685499
NA DVU0336 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS380770 1341 - 0.683072
NA DVU1392 NLP/P60 family proteinchromosome CDS1464357 798 + 0.58396
NA DVU2439 efflux transporter, RND family, MFP subunitchromosome CDS2544684 1236 - 0.651294
NA DVU3240 peptidase, M23/M37 familychromosome CDS3410878 990 - 0.624242
NA DVU1264 transglycosylase SLT domain proteinchromosome CDS1352419 762 - 0.632546
NA DVU3192 glycosyl transferase, group 1 family proteinchromosome CDS3352605 1161 + 0.672696
NA DVU2353 glycosyl transferase, group 2 family proteinchromosome CDS2449172 1809 + 0.676617
NA DVU0677 transglycosylase domain proteinchromosome CDS749238 1050 - 0.627619
NA DVUA0072 glycosyl transferase, group 1 family proteinpDV CDS96400 1338 - 0.586697
NA DVU1803 glycosyl transferase, group 1 family proteinchromosome CDS1865370 1089 - 0.652893
NA DVU2375 lipoprotein releasing system, permease proteinchromosome CDS2471933 1236 - 0.634304
NA DVU1804 glycosyl transferase, group 1 family proteinchromosome CDS1866458 1830 - 0.639891
NA DVU3361 ADP-heptose synthase, putativechromosome CDS3531411 1026 + 0.620858
NA DVU2510 penicillin-binding proteinchromosome CDS2623154 2073 - 0.643994
NA DVU1018 type I secretion membrane fusion protein, HlyD familychromosome CDS1119444 1290 + 0.604651
NA DVU1214 dolichyl-phosphate-mannose-protein mannosyltransferase family proteinchromosome CDS1303706 2004 - 0.661677
NA DVU0865 membrane-associated zinc metalloprotease, putativechromosome CDS957331 1065 - 0.638498
NA DVU3008 NeuB family proteinchromosome CDS3120890 1077 + 0.696379
NA DVU2994 glycosyl transferase, group 2 family proteinchromosome CDS3104200 1029 + 0.669582
NA DVUA0050 conserved hypothetical proteinpDV CDS61246 1257 + 0.698488
NA DVU2699 transglycosylase SLT domain proteinchromosome CDS2808534 648 + 0.699074
NA DVU0076 glycosyl transferase, group 2 family proteinchromosome CDS92949 1005 + 0.671642
NA DVU0060 efflux transporter, RND family, MFP subunitchromosome CDS69540 1185 + 0.669198
NA DVU2992 glycosyl transferase, group 2 family proteinchromosome CDS3099901 1617 + 0.648114
NA DVU2627 conserved domain proteinchromosome CDS2744482 378 - 0.62963
NA DVU0328 glycosyl transferase, group 1 family proteinchromosome CDS371560 1146 - 0.672775
NA DVU0072 glucose-1-phosphate cytidylyl-transferasechromosome CDS89105 780 + 0.619231
NA DVU0407 rare lipoprotein A family proteinchromosome CDS455770 645 + 0.603101
NA DVU0397 rare lipoprotein A, putativechromosome CDS445073 732 - 0.631148
NA DVU2635 glycosyl transferase, group 1 family proteinchromosome CDS2750041 1134 + 0.659612
NA DVU3201 hypothetical proteinchromosome CDS3363813 1062 + 0.687382
NA DVU2995 glycosyl transferase, group 1 family proteinchromosome CDS3105499 1164 - 0.67268
NA DVU3246 RND efflux system, outer membrane protein, NodT familychromosome CDS3415791 1626 + 0.649446
NA DVU0815 AsmA family proteinchromosome CDS902205 2106 - 0.649573
NA DVU3097 outer membrane efflux proteinchromosome CDS3238096 1320 - 0.619697
NA DVUA0081 glycosyl transferase, group 1/2 family proteinpDV CDS107247 2115 + 0.649645
NA DVU0058 efflux transporter, RND family, MFP subunitchromosome CDS64527 1152 + 0.706597
NA DVU0073 CDP-glucose-4,6-dehydratase, putativechromosome CDS89894 1107 + 0.673893
NA DVU3196 twin-arginine translocation pathway signal sequence domain proteinchromosome CDS3358126 1152 - 0.643229
NA DVU3005 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS3117261 1035 + 0.66087
NA DVUA0021 conserved hypothetical proteinpDV CDS26632 1062 - 0.690207
NA DVU0352 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS399515 1182 - 0.630288
NA DVU0099 TonB domain proteinchromosome CDS129890 1161 - 0.681309
NA DVU0784 conserved hypothetical proteinchromosome CDS870985 348 - 0.591954
NA DVU2154 tail assembly protein, putativechromosome CDS2256245 426 - 0.671362
NA DVU0334 D-alanine--D-alanine ligasechromosome CDS377980 912 + 0.677632
NA DVU0265 membrane protein, putativechromosome CDS307760 660 - 0.643939
NA DVU2466 flocculin repeat domainchromosome CDS2572078 870 + 0.637931
NA DVUA0054 glycosyl transferase, group 1 family proteinpDV CDS65572 1401 + 0.713776
NA DVU1446 heptosyltransferase family proteinchromosome CDS1524125 1404 - 0.65812
NA DVU0896 lipoprotein, NLP/P60 familychromosome CDS988431 1395 + 0.665233
NA DVUA0045 aminotransferase, DegT/DnrJ/EryC1/StrS familypDV CDS53852 1617 + 0.734694
NA DVU0082 conserved hypothetical proteinchromosome CDS100383 1593 - 0.671061
NA DVU0117 glycosyl transferase, group 2 family proteinchromosome CDS150843 918 - 0.676471
NA DVU0349 NeuB family proteinchromosome CDS396098 1059 - 0.640227
NA DVU1410 conserved domain proteinchromosome CDS1478673 873 - 0.62772
NA DVU1851 peptidase, M23/M37 familychromosome CDS1918806 1323 + 0.603175
NA DVU0075 aminotransferase, DegT/DnrJ/EryC1/StrS familychromosome CDS91765 1134 + 0.674603
NA DVU0861 glycosyl transferase, group 1 family proteinchromosome CDS952490 1119 - 0.645219
NA DVU2165 lysozyme, putativechromosome CDS2264316 501 - 0.684631
NA DVU0887 transglycosylase, putativechromosome CDS976825 1275 + 0.687059
NA DVU2102 outer membrane protein, OMP85 familychromosome CDS2195285 2331 - 0.670099
NA DVU1668 outer membrane lipoprotein carrier protein, putativechromosome CDS1748249 678 + 0.59882
NA DVU1055 heptosyltransferase family proteinchromosome CDS1155824 1035 + 0.656039
NA DVUA0038 capsular polysaccharide transport proteinpDV CDS45644 807 + 0.653036
NA DVU2993 glycosyl transferase, group 1/2 family proteinchromosome CDS3101540 2664 + 0.682057
NA DVU1107 tail tape measure proteinchromosome CDS1212003 2343 - 0.670935
NA DVU3013 glycosyl transferase, group 2 family proteinchromosome CDS3126886 1707 + 0.660223
NA DVU0281 exopolysaccharide biosynthesis protein, putativechromosome CDS325641 1440 - 0.611806
NA DVU1415 AsmA family proteinchromosome CDS1487077 3585 + 0.642399
NA DVU2971 glycosyl transferase, family 8chromosome CDS3080514 912 - 0.625
NA DVU0041 transglycosylase, SLT familychromosome CDS47257 1764 - 0.659297
NA DVU2808 TonB domain proteinchromosome CDS2911653 510 + 0.678431
NA DVU0280 glycosyl transferase, group 1 family proteinchromosome CDS324397 1140 - 0.629825
NA DVU3247 efflux transporter, RND family, MFP subunitchromosome CDS3417458 1170 + 0.657265
NA DVU0342 NAD-dependent epimerase/dehydratase family proteinchromosome CDS387502 915 - 0.627322
NA DVUA0051 glycosyl transferase, group 1 family proteinpDV CDS62499 1389 + 0.717063
NA DVU3101 tonB protein, putativechromosome CDS3240930 1026 + 0.653021
NA DVU0341 3-deoxy-D-manno-octulosonatecytidylyltransferasechromosome CDS386419 771 - 0.608301
NA DVUA0077 ABC transporter, permease proteinpDV CDS104230 885 - 0.60226
alr DVU0955 alanine racemasechromosome CDS1050212 1131 + 0.650752
cutE DVU1860 apolipoprotein N-acyltransferasechromosome CDS1926819 1509 + 0.612326
dapA DVU1868 dihydrodipicolinate synthasechromosome CDS1933424 879 + 0.615472
dgkA DVU3377 diacylglycerol kinasechromosome CDS3550058 375 - 0.624
galE DVU1360 UDP-glucose 4-epimerasechromosome CDS1438843 996 + 0.630522
galU DVU1283 UTP-glucose-1-phosphate uridylyltransferasechromosome CDS1375922 879 + 0.584755
gidB DVU1250 methyltransferase GidBchromosome CDS1336980 657 + 0.628615
glmS DVU3156 glucosamine--fructose-6-phosphate aminotransferase (isomerizing)chromosome CDS3311611 1824 + 0.661732
gmd DVU0448 GDP-mannose 4,6-dehydratasechromosome CDS508293 1146 + 0.631763
ispH DVU0055 hydroxymethylbutenyl pyrophosphate reductasechromosome CDS61763 873 + 0.657503
kdsA DVU1624 3-deoxy-8-phosphooctulonate synthasechromosome CDS1709008 822 + 0.642336
kdsB DVU3114 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS3263483 759 - 0.656126
lepA DVU0703 GTP-binding protein LepAchromosome CDS782190 1806 + 0.616833
lgt DVU0015 prolipoprotein diacylglyceryl transferasechromosome CDS18804 792 - 0.623737
lpxA DVU2367 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS2463471 804 - 0.626866
lpxB DVU1361 lipid A disaccharide synthasechromosome CDS1439920 1131 - 0.65252
lpxC DVU2917 UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS3017229 927 + 0.62891
lpxD DVU2369 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamineN-acyl transferasechromosome CDS2464738 1035 - 0.633816
lpxK DVU2468 tetraacyldisaccharide 4'-kinasechromosome CDS2575998 1065 - 0.685446
lspA DVU1928 lipoprotein signal peptidasechromosome CDS2002720 498 + 0.600402
mraW DVU2512 S-adenosyl-methyltransferase MraWchromosome CDS2625531 972 - 0.662551
mraY DVU2507 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS2619204 1077 - 0.610028
mreC DVU0788 rod shape-determining protein MreCchromosome CDS874730 915 - 0.654645
mtgA DVU2296 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS2390172 747 + 0.619813
murA DVU3258 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS3432618 1254 - 0.667464
murB DVU2502 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS2613380 891 - 0.617284
murC DVU2503 UDP-N-acetylmuramate--alanine ligasechromosome CDS2614272 1365 - 0.638095
murD DVU2506 UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS2617887 1302 - 0.655914
murE DVU2509 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligasechromosome CDS2621697 1461 - 0.658453
murF DVU2508 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligasechromosome CDS2620270 1437 - 0.666667
murG DVU2504 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS2615647 1098 - 0.687614
murI DVU0768 glutamate racemasechromosome CDS858973 849 - 0.664311
rfaD DVU0481 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS547103 972 + 0.614198
rfbA DVU0925 glucose-1-phosphate thymidylyltransferasechromosome CDS1016369 909 - 0.606161
rfbB DVU1364 dTDP-glucose 4,6-dehydratasechromosome CDS1442920 1023 - 0.617791
rfbC DVU0698 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS773223 573 - 0.623037
rfbD DVU1363 dTDP-4-dehydrorhamnose reductasechromosome CDS1442048 876 - 0.643836
spsF DVU0350 spore coat polysaccharide biosynthesis protein spsFchromosome CDS397193 684 - 0.676901
ugd DVU1907 UDP-glucose 6-dehydrogenasechromosome CDS1982240 1338 - 0.624066
wcaG DVU0090 GDP-fucose synthetasechromosome CDS115316 972 + 0.628601