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2024-05-04 06:48:13

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 177

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSHAb0370 putative lipoprotein component of a efflux transporterchromosome II CDS431562 1170 + 0.440171
NA PSHAb0237 putative glycosyltransferasechromosome II CDS280359 1230 - 0.415447
NA PSHAa0364 putative carboxyl-terminal proteasechromosome I CDS379928 1266 - 0.383096
NA PSHAa2698 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV) with frame shiftchromosome I CDS2855365 600 - 0.373333
NA PSHAa1240 conserved protein of unknown functionchromosome I CDS1292413 1176 - 0.434524
NA PSHAa2082 conserved protein of unknown functionchromosome I CDS2206204 636 + 0.382075
NA PSHAa2826 putative substate-binding protein involved in drug resistancechromosome I CDS2999124 1164 + 0.405498
NA PSHAa2182 putative mechanosensitive ion channelchromosome I CDS2318586 861 - 0.360046
NA PSHAa1983 conserved protein of unknown function ; putative outer membrane proteinchromosome I CDS2085854 1770 - 0.39322
NA PSHAa0401 putative polysaccharide biosynthesis proteinchromosome I CDS419833 1956 + 0.403374
NA PSHAa1779 putative Capsular polysaccharide biosynthesis, capCchromosome I CDS1868307 729 - 0.371742
NA PSHAa0715 conserved protein of unknown function ; putative inner membrane proteinchromosome I CDS750681 744 - 0.387097
NA PSHAa2452 putative glycosyl transferasechromosome I CDS2598757 1122 - 0.355615
NA PSHAa0851 conserved protein of unknown function ; putative MltA-interacting MipA family ; putative signal peptidechromosome I CDS879974 852 + 0.376761
NA PSHAa2023 conserved protein of unknown function ; putative rlpA-like lipoprotein precursorchromosome I CDS2138316 390 - 0.402564
NA PSHAb0524 putative TonB2 proteinchromosome II CDS590148 606 + 0.453795
NA PSHAa1788 putative membrane proteinchromosome I CDS1878237 1188 - 0.292929
NA PSHAa0704 conserved protein of unknown functionchromosome I CDS734316 1518 - 0.394598
NA PSHAa0528 conserved protein of unknown function ; putative TonB domain proteinchromosome I CDS543575 1098 - 0.416211
NA PSHAa0397 putative orphan proteinchromosome I CDS415431 783 + 0.375479
NA PSHAa2520 putative mechanosensitive channel protein (MscS family)chromosome I CDS2673561 1080 + 0.394444
NA PSHAb0108 putative membrane proteinchromosome II CDS129136 1554 - 0.439511
NA PSHAa0544 putative peptidase, M23/M37 familychromosome I CDS557303 1314 - 0.407915
NA PSHAa2958 putative multidrug resistance proteinchromosome I CDS3139775 1185 - 0.420253
NA PSHAa1780 putative Exopolysaccharide biosynthesis proteinchromosome I CDS1869039 2214 - 0.36766
NA PSHAa1072 putative glycine betaine transporterchromosome I CDS1105775 1566 + 0.409323
NA PSHAa0398 putative polysaccharide export familychromosome I CDS416337 984 + 0.394309
NA PSHAa1038 putative proteasechromosome I CDS1075227 3243 + 0.432316
NA PSHAa2320 putative glycosyl transferasechromosome I CDS2460085 1086 - 0.379374
NA PSHAb0398 putative protein with Glycosyl transferase domainchromosome II CDS455479 750 + 0.433333
NA PSHAa0303 putative outer membrane cation efflux proteinchromosome I CDS313832 1326 + 0.427602
NA PSHAa1056 putative Outer membrane lipoprotein LolBchromosome I CDS1093159 609 - 0.377668
NA PSHAa2318 putative ADP-heptose:LPS heptosyltransferasechromosome I CDS2458170 1059 - 0.428706
NA PSHAa2567 putative Outer membrane porinchromosome I CDS2713454 939 - 0.391906
NA PSHAa2486 putative acetyltransferasechromosome I CDS2638547 486 - 0.384774
NA PSHAa2171 putative Integral membrane proteinchromosome I CDS2308229 483 + 0.372671
NA PSHAa1786 putative glycosyl transferase, WecB/TagA/CpsF familychromosome I CDS1876662 729 - 0.352538
NA PSHAa2430 putative orphan proteinchromosome I CDS2582003 807 - 0.384139
NA PSHAa0559 putative Secretion proteinchromosome I CDS576961 1302 + 0.407066
NA PSHAa1789 putative glycosyl transferase, family 2chromosome I CDS1879478 915 - 0.342077
NA PSHAb0417 putative quaternary ammonium permeasechromosome II CDS476307 1218 - 0.358785
NA PSHAa0289 conserved protein of unknown function ; putative signal peptidechromosome I CDS302810 1566 - 0.43742
NA PSHAb0390 putative dihydrodipicolinate synthase (dapA-like)chromosome II CDS450141 918 + 0.422658
NA PSHAa0420 putative orphan proteinchromosome I CDS434045 141 + 0.475177
NA PSHAa2331 putative transport binding proteinchromosome I CDS2475502 1413 + 0.395612
NA PSHAa1023 putative Rare lipoprotein Achromosome I CDS1059457 678 - 0.415929
NA PSHAa0690 putative lipoprotein NlpD precursorchromosome I CDS715276 825 + 0.361212
NA PSHAb0363 putative outer membrane porinchromosome II CDS423072 960 + 0.391667
NA PSHAa1330 putative D-alanyl-D-alanine carboxypeptidasechromosome I CDS1381965 726 - 0.403581
NA PSHAb0069 putative membrane protein with TonB domainchromosome II CDS81613 810 + 0.364198
NA PSHAb0487 putative substrate binding periplasmic component of a multidrug resistance protein (metabolite exporter)chromosome II CDS551744 1068 - 0.390449
NA PSHAa0337 putative orphan proteinchromosome I CDS349546 291 - 0.333333
NA PSHAa0863 conserved protein of unknown function ; putative outer membrane proteinchromosome I CDS891074 858 - 0.409091
NA PSHAa1125 putative lipoprotein-34 NlpBchromosome I CDS1167268 1059 + 0.387158
NA PSHAa0577 putative metal ion efflux outer membrane factor protein familychromosome I CDS595995 1248 + 0.432692
NA PSHAa2557 putative mechanosensitive channel protein (MscS family)chromosome I CDS2704205 951 - 0.382755
NA PSHAa1436 Choline-glycine betaine transporterchromosome I CDS1511313 1581 - 0.40291
NA PSHAa1787 conserved protein of unknown function ; putative glycosyl transferasechromosome I CDS1877403 798 - 0.323308
NA PSHAa0304 putative cation efflux system proteinchromosome I CDS315147 1749 + 0.424814
NA PSHAb0176 putative mechanosensitive channel family protein (MscS family UPF0003)chromosome II CDS216149 867 + 0.395617
NA PSHAa1872 putative TolA proteinchromosome I CDS1974378 906 - 0.428256
NA PSHAa1621 putative TonB-dependent receptor protein with OmpA-like transmembrane domainchromosome I CDS1685341 570 + 0.403509
NA PSHAb0242 putative transglycosylasechromosome II CDS286376 1275 - 0.332549
NA PSHAa2170 putative peptidase family M23/M37 proteinchromosome I CDS2307076 1164 + 0.398625
NA PSHAa1324 conserved protein of unknown function; putative secreted protein, conserved in gamma-proteobacteriachromosome I CDS1377977 468 - 0.418803
NA PSHAa2844 putative transport proteinchromosome I CDS3014939 1254 - 0.397927
NA PSHAa0629 conserved protein of unknown function ; putative outer membrane proteinchromosome I CDS650249 735 + 0.432653
NA PSHAa0719 conserved protein of unknown functionchromosome I CDS753547 813 + 0.377614
NA PSHAa1575 putative outer membrane porinchromosome I CDS1642630 1212 + 0.385314
NA PSHAb0372 putative lipoprotein, possibly associated with the outermembranechromosome II CDS435886 1413 + 0.424628
NA PSHAa2155 putative protein W (OmpW) familychromosome I CDS2282044 654 + 0.392966
NA PSHAa2832 putative multidrug efflux system (AcrA/AcrE family)chromosome I CDS3003739 1086 - 0.430939
NA PSHAa2272 conserved protein of unknown function; putative membrane proteinchromosome I CDS2415435 1053 + 0.401709
NA PSHAb0509 putative periplasmic lytic murein transglycosylasechromosome II CDS573800 1017 + 0.409046
NA PSHAa1781 putative polysaccharide export-related proteinchromosome I CDS1871273 510 - 0.372549
NA PSHAa0621 putative orphan proteinchromosome I CDS642833 543 + 0.394107
NA PSHAb0325 putative outer membrane protein oprM precursor of a metabolite export systemchromosome II CDS377978 1413 + 0.43666
NA PSHAa0288 putative orphan protein ; putative signal peptidechromosome I CDS302423 384 - 0.424479
NA PSHAa0714 conserved protein of unknown function ; putative mechanosensitive channel protein (MscS family)chromosome I CDS749816 828 - 0.402174
NA PSHAa2575 conserved protein of unknown functionchromosome I CDS2721618 570 + 0.389474
NA PSHAa2741 conserved protein of unknown function ; putative enzyme with NAD(P)-binding domainchromosome I CDS2909027 681 - 0.453745
NA PSHAa0049 conserved protein of unknown function ; putative methylasechromosome I CDS49800 591 + 0.392555
NA PSHAa0287 putative mandelate racemase/muconate lactonizing enzyme familychromosome I CDS301177 1176 + 0.434524
NA PSHAa0358 conserved protein of unknown function ; putative membrane proteinchromosome I CDS372508 837 - 0.363202
NA PSHAa1384 putative transport proteinchromosome I CDS1449969 222 + 0.351351
NA PSHAa0400 putative aminotransferase, DegT/DnrJ/EryC1/StrS\tfamilychromosome I CDS418169 1179 + 0.424088
NA PSHAa0183 putative outer membrane protein; signal peptidechromosome I CDS192148 1065 + 0.39061
NA PSHAa1797 conserved protein of unknown functionchromosome I CDS1887786 1326 + 0.355958
NA PSHAa2630 Mannose-1-phosphate guanyltransferase-related proteinchromosome I CDS2782111 654 - 0.422018
NA PSHAa1494 putative peptidase, M23/M37 familychromosome I CDS1570884 819 + 0.421245
NA PSHAb0458 putative cyclopropane-fatty-acyl-phospholipid synthasechromosome II CDS517077 1263 + 0.360253
NA PSHAb0439 putative multidrug resistance protein (substrate binding lipoprotein)chromosome II CDS501377 1083 - 0.421053
NA PSHAa0558 putative outer membrane transport proteinchromosome I CDS575553 1419 + 0.411557
NA PSHAa2842 putative lipoproteinchromosome I CDS3013006 630 - 0.406349
NA PSHAa0948 conserved protein of unknown function; putative membrane proteinchromosome I CDS976695 834 - 0.418465
TonB2 PSHAa1191 TonB2 protein; iron acquisition via a siderophore-mediated active transport.chromosome I CDS1237837 618 + 0.470874
acrE PSHAb0323 putative lipoprotein component of efflux protein (exporter)chromosome II CDS373671 1164 + 0.430412
alr PSHAa2434 alanine racemase 1, PLP-binding, biosyntheticchromosome I CDS2584082 993 - 0.432024
amiB PSHAa0268 N-acetylmuramoyl-l-alanine amidase II, murein hydrolasechromosome I CDS280889 1296 + 0.417438
asmA PSHAa2821 putative AsmA proteinchromosome I CDS2993689 1950 - 0.383077
bcsA PSHAa2162 Cellulose synthase catalytic subunit [UDP-forming]chromosome I CDS2289550 2655 + 0.370998
betT PSHAa2041 putative high-affinity choline transport proteinchromosome I CDS2157296 2028 + 0.410749
blc PSHAb0044 outer membrane lipoprotein (lipocalin)chromosome II CDS51833 525 - 0.350476
csgG PSHAb0194 putative assembly or transport protein for curli synthesischromosome II CDS231998 774 - 0.386305
cutE PSHAa1042 apolipoprotein N-acyltransferase copper homeostasis proteinchromosome I CDS1080016 1551 - 0.431979
czcB PSHAa0578 putative Cobalt-zinc-cadmium resistance protein ; (cation efflux system protein)chromosome I CDS597239 1248 + 0.425481
dacA PSHAa1022 D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5chromosome I CDS1057979 1164 - 0.393471
dapA PSHAa0180 putative dihydrodipicolinate synthasechromosome I CDS188207 885 - 0.441808
ddlB PSHAa2502 D-alanine-D-alanine ligase B, affects cell divisionchromosome I CDS2652934 921 - 0.446254
dgkA PSHAa2786 Diacylglycerol kinase (DAGK) (Diglyceride kinase) (DGK)chromosome I CDS2965444 381 - 0.401575
dgkA PSHAa2773 putative diacylglycerol kinase (DAGK)chromosome I CDS2949604 372 + 0.397849
dsbE PSHAb0163 putative thiol:disulfide interchange proteinchromosome II CDS202612 822 + 0.414842
ecfE PSHAa2029 membrane-associated proteasechromosome I CDS2144240 1359 - 0.410596
ecfK PSHAa2028 putative outer membrane protein assembly factorchromosome I CDS2141672 2472 - 0.403722
flgJ PSHAa0777 putative flagellar biosynthesischromosome I CDS807725 996 + 0.414659
ftsI PSHAa2510 division-specific transpeptidase, penicillin-binding protein 3chromosome I CDS2662821 1818 - 0.441694
ftsQ PSHAa2501 cell division protein, needs FtsK for localisation at septum, FtsL, FtsB and FtsQ form a complex in vivochromosome I CDS2652153 780 - 0.398718
galE PSHAa0469 UDP-galactose 4-epimerasechromosome I CDS488463 1014 - 0.427022
galU PSHAa0750 UTP-glucose-1-phosphate uridylyltransferasechromosome I CDS785388 879 + 0.418658
gidB PSHAa3018 putative S-adenosyl-L-methionine-dependent methyltransferase domain, could be a tRNA or lipid methylasechromosome I CDS3206077 621 - 0.380032
glmS PSHAa2994 L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome I CDS3182692 1821 - 0.434377
glmU PSHAa3006 bifunctional: N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal)chromosome I CDS3195591 1359 - 0.428256
imp PSHAa2632 organic solvent tolerance proteinchromosome I CDS2783880 2223 + 0.403059
ispH PSHAa0921 4-hydroxy-3-methylbut-2-enyl diphosphate reductasechromosome I CDS950039 930 + 0.452688
kdsA PSHAa1063 3-deoxy-D-manno-octulosonic acid 8-P synthetasechromosome I CDS1099738 855 + 0.405848
kdsB PSHAa1658 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome I CDS1726404 762 - 0.41601
kdtA PSHAa2325 putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome I CDS2466328 1284 + 0.403427
lepA PSHAa0730 GTP-binding membrane protein of unknown functionchromosome I CDS761765 1791 + 0.402568
lgt PSHAa0748 phosphatidylglycerol-prolipoprotein diacylglyceryl transferasechromosome I CDS783699 804 + 0.424129
lolA PSHAa1715 putative periplasmic chaperone effects translocation of lipoproteins from inner membrane to outer membranechromosome I CDS1793036 627 - 0.419458
lolC PSHAa1388 transport protein of outer membrane lipoproteins (ABC superfamily, membrane)chromosome I CDS1453551 1233 + 0.395783
lolE PSHAa1390 putative lipoprotein releasing system transmembrane proteinchromosome I CDS1455464 1245 + 0.414458
lpxA PSHAa2024 Lipid A biosynthesis, UDP-N-acetylglucosamine acetyltransferasechromosome I CDS2138859 771 - 0.409857
lpxB PSHAa2017 tetraacyldisaccharide-1-P synthasechromosome I CDS2130433 1158 - 0.412781
lpxC PSHAa2498 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase)chromosome I CDS2648637 912 - 0.392544
lpxD PSHAa2026 UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome I CDS2140112 1023 - 0.407625
lpxK PSHAa1660 tetraacyldisaccharide 4' kinase (lipid A 4'kinase)chromosome I CDS1727340 981 - 0.393476
lpxL PSHAa2593 Lipid A biosynthesis lauroyl acyltransferasechromosome I CDS2738042 924 + 0.419913
lspA PSHAa0919 lipoprotein signal peptidase (SPase II)(Prolipoprotein signal peptidase)chromosome I CDS949102 501 + 0.377246
mdoB PSHAa2774 putative phosphoglycerol transferasechromosome I CDS2949966 1980 + 0.384848
mdoH PSHAa2938 putative glucosyltransferase for synthesis of periplasmic glucanschromosome I CDS3112093 1962 + 0.399592
mipA PSHAa2838 putative scaffolding protein for murein-synthesizing holoenzyme, outer membrane proteinchromosome I CDS3009445 738 + 0.394309
mltD PSHAa0293 putative membrane-bound lytic murein transglycosylase D [Precursor]chromosome I CDS306586 1470 - 0.405442
mltD PSHAa1967 lytic murein transglycosylase C, membrane-boundchromosome I CDS2070750 1584 + 0.417929
motY PSHAa2115 putative Component of sodium-driven polar flagellar motorchromosome I CDS2235151 879 + 0.372014
mpl PSHAa2299 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (Murein peptide ligase)chromosome I CDS2443485 1356 - 0.408555
mraW PSHAa2512 S-adenosyl-dependent methyltransferasechromosome I CDS2664958 939 - 0.440895
mraY PSHAa2507 phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome I CDS2658889 1083 - 0.406279
mrcA PSHAa2721 Murein polymerase, bifunctional murein transglycosylase (N-terminal) and transpeptidase (C-terminal); penicillin-binding protein PBP1Achromosome I CDS2883941 2511 + 0.410992
mrcB PSHAa2256 Murein polymerase, bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein PBP1B; dimericchromosome I CDS2394016 2343 - 0.426376
mrdA PSHAa1025 cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase)chromosome I CDS1061333 1869 - 0.403959
mreC PSHAa2681 putative rod shape-determining protein (partial)chromosome I CDS2836279 834 - 0.432854
mreD PSHAa2680 rod shape-determining proteinchromosome I CDS2835807 417 - 0.386091
mscS PSHAa0396 putative mechanosensitive channel protein (MscS family)chromosome I CDS414580 819 + 0.387057
murA PSHAa2538 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome I CDS2689845 1260 - 0.442857
murB PSHAa2914 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome I CDS3082923 1011 - 0.406528
murC PSHAa2503 UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzymechromosome I CDS2653851 1362 - 0.449339
murD PSHAa2506 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome I CDS2657548 1341 - 0.42431
murE PSHAa2509 UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligasechromosome I CDS2661350 1479 - 0.439486
murF PSHAa2508 D-alanine:D-alanine-adding enzymechromosome I CDS2659971 1383 - 0.418655
murG PSHAa2504 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome I CDS2655303 1077 - 0.435469
murI PSHAa0252 glutamate racemasechromosome I CDS264077 798 + 0.407268
nanA PSHAb0156 N-acetylneuraminate lyase (aldolase)chromosome II CDS190981 906 - 0.43819
pal PSHAa1870 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNAchromosome I CDS1972432 543 - 0.421731
pldA PSHAa0175 putative outer membrane phospholipase A precursorchromosome I CDS183849 1035 - 0.388406
prc PSHAa1678 periplasmic carboxy-terminal protease with specificity for non-polar C-terminichromosome I CDS1757681 2025 - 0.406914
rfaE PSHAa2323 bifunctional ADP-L-glycero-D-manno-heptose synthase: putaive kinase (N-terminal); putative sugar nucleotide transferase (C-terminal)chromosome I CDS2464060 1440 - 0.422917
rffE PSHAa0466 UDP-N-acetyl glucosamine-2-epimerasechromosome I CDS485171 1071 - 0.4155
rlpB PSHAa1030 putative minor lipoproteinchromosome I CDS1065830 492 - 0.396341
skp PSHAa2027 periplasmic molecular chaperone for outer membrane proteinschromosome I CDS2141142 420 - 0.369048
slt PSHAa0012 secreted lytic murein transglycosylasechromosome I CDS15000 1887 + 0.414414
tolC PSHAa2592 Outer membrane protein tolC precursorchromosome I CDS2736584 1356 + 0.412979
ugd PSHAa0444 UDP-glucose 6-dehydrogenasechromosome I CDS464254 1167 + 0.380463
vacJ PSHAa0831 lipoprotein precursorchromosome I CDS859987 732 + 0.409836
wcaJ PSHAa1783 UDP-glucose lipid carrier transferasechromosome I CDS1872992 1404 - 0.358262
ybdG PSHAa2445 putative membrane proteinchromosome I CDS2592651 1272 + 0.392296
yraR PSHAa2764 putative NADH dehydrogenase with NAD(P)-binding domainchromosome I CDS2938284 657 - 0.398782