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2024-05-02 17:30:21

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236

Number of genes found: 172

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhodoferax ferrireducens DSM 15236, DSM 15236
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rfer_2426 MscS Mechanosensitive ion channelchromosome CDS2675605 816 - 0.589461
NA Rfer_3765 Lytic transglycosylase, catalyticchromosome CDS4201613 981 + 0.671763
NA Rfer_2346 Serine-type D-Ala-D-Ala carboxypeptidasechromosome CDS2579493 1041 + 0.535062
NA Rfer_0686 hypothetical proteinchromosome CDS722584 1116 - 0.585125
NA Rfer_0826 Cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS862202 1215 - 0.630453
NA Rfer_1308 carboxyl-terminal proteasechromosome CDS1400663 1473 - 0.577733
NA Rfer_3921 rod shape-determining protein MreDchromosome CDS4380277 531 - 0.636535
NA Rfer_3248 hydroxymethylbutenyl pyrophosphate reductasechromosome CDS3599943 963 - 0.617861
NA Rfer_3736 Twin-arginine translocation pathway signalchromosome CDS4167554 2184 - 0.630952
NA Rfer_2992 glycosyl transferase, family 51chromosome CDS3297274 3045 + 0.632184
NA Rfer_0663 UDP-N-acetylglucosamine 2-epimerasechromosome CDS687744 1197 + 0.598997
NA Rfer_2918 Penicillin-binding protein 1Achromosome CDS3227411 2394 - 0.566416
NA Rfer_0277 NmrA-likechromosome CDS281882 891 - 0.654321
NA Rfer_0098 Organic solvent tolerance proteinchromosome CDS100836 2400 - 0.602083
NA Rfer_2690 NAD-dependent epimerase/dehydratasechromosome CDS2960830 960 - 0.622917
NA Rfer_0673 GDP-mannose 6-dehydrogenasechromosome CDS701371 1317 + 0.567957
NA Rfer_1636 dihydrodipicolinate synthetasechromosome CDS1767391 936 - 0.571581
NA Rfer_3425 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS3811039 1167 - 0.663239
NA Rfer_0085 Nucleotidyl transferasechromosome CDS85846 819 + 0.650794
NA Rfer_3562 Curli production assembly/transport component CsgGchromosome CDS3961332 675 - 0.52
NA Rfer_4106 RND efflux system, outer membrane lipoprotein, NodTchromosome CDS4583146 1458 - 0.713992
NA Rfer_3424 UDP-N-acetylmuramate--alanine ligasechromosome CDS3808965 1434 - 0.642259
NA Rfer_2093 OmpA/MotBchromosome CDS2267778 534 + 0.565543
NA Rfer_4058 glycosyl transferase, family 51chromosome CDS4524662 2037 - 0.653412
NA Rfer_0670 glycosyl transferase, group 1chromosome CDS697011 1218 + 0.610837
NA Rfer_0435 NAD-dependent epimerase/dehydratasechromosome CDS440514 891 - 0.581369
NA Rfer_0194 OmpWchromosome CDS192375 684 + 0.587719
NA Rfer_1156 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1chromosome CDS1242123 849 + 0.484099
NA Rfer_0488 alanine racemasechromosome CDS504569 1125 + 0.662222
NA Rfer_3177 outer membrane lipoprotein carrier protein LolAchromosome CDS3514233 642 - 0.588785
NA Rfer_0771 glycosyl transferase, family 2chromosome CDS808088 1020 - 0.60098
NA Rfer_1614 glycosyl transferase, group 1chromosome CDS1746585 993 - 0.647533
NA Rfer_0702 Undecaprenyl-phosphategalactosephosphotransferasechromosome CDS740101 1383 + 0.567607
NA Rfer_3412 TonB-likechromosome CDS3796878 858 + 0.656177
NA Rfer_1235 NAD-dependent epimerase/dehydratasechromosome CDS1330447 963 + 0.602285
NA Rfer_0525 phospholipasechromosome CDS548359 1203 - 0.632585
NA Rfer_3762 Type I secretion outer membrane protein, TolCchromosome CDS4197041 1830 - 0.597268
NA Rfer_0741 NLP/P60chromosome CDS779356 504 + 0.585317
NA Rfer_0508 Lipopolysaccharide heptosyltransferase IIchromosome CDS526589 954 + 0.637317
NA Rfer_0759 rare lipoprotein Bchromosome CDS794128 492 + 0.605691
NA Rfer_2998 Lipopolysaccharide heptosyltransferase Ichromosome CDS3305098 1062 - 0.661017
NA Rfer_2912 peptidase M23Bchromosome CDS3222462 993 - 0.591138
NA Rfer_2657 Lytic transglycosylase, catalyticchromosome CDS2924375 804 + 0.574627
NA Rfer_3922 rod shape-determining protein MreCchromosome CDS4380804 921 - 0.663409
NA Rfer_1239 DegT/DnrJ/EryC1/StrS aminotransferasechromosome CDS1334045 1107 + 0.547425
NA Rfer_2091 glycosyl transferase, family 2chromosome CDS2265513 783 - 0.491699
NA Rfer_0050 methyltransferase GidBchromosome CDS53728 675 + 0.628148
NA Rfer_3184 RND efflux system, outer membrane lipoprotein, NodTchromosome CDS3521847 1428 + 0.654762
NA Rfer_0658 polysaccharide export proteinchromosome CDS681878 567 + 0.569665
NA Rfer_1315 Cyanophycin synthetasechromosome CDS1408237 2169 - 0.639465
NA Rfer_0672 glycosyl transferase, group 1chromosome CDS700160 1215 + 0.590946
NA Rfer_1592 surface antigen (D15)chromosome CDS1722838 1866 + 0.674169
NA Rfer_3801 Serine-type D-Ala-D-Ala carboxypeptidasechromosome CDS4241685 1185 - 0.58903
NA Rfer_2938 VacJ-like lipoproteinchromosome CDS3252070 834 + 0.592326
NA Rfer_2780 peptidase M23Bchromosome CDS3067681 879 - 0.613197
NA Rfer_2168 conserved hypothetical proteinchromosome CDS2363564 684 - 0.611111
NA Rfer_1253 DegT/DnrJ/EryC1/StrS aminotransferasechromosome CDS1346461 1119 + 0.449508
NA Rfer_3346 negative regulator of AmpC, AmpDchromosome CDS3714777 612 + 0.581699
NA Rfer_2097 dihydrodipicolinate synthasechromosome CDS2271011 894 - 0.589485
NA Rfer_2159 Conserved TM helixchromosome CDS2349236 693 - 0.590188
NA Rfer_3819 outer membrane chaperone Skp (OmpH)chromosome CDS4262498 513 + 0.549708
NA Rfer_2064 RND efflux system, outer membrane lipoprotein, NodTchromosome CDS2234832 1500 - 0.671333
NA Rfer_3173 conserved hypothetical proteinchromosome CDS3509725 663 - 0.627451
NA Rfer_2676 polysaccharide export proteinchromosome CDS2943385 2550 + 0.588627
NA Rfer_1074 glucosamine--fructose-6-phosphate aminotransferase, isomerizingchromosome CDS1147882 1884 - 0.619958
NA Rfer_2152 MscS Mechanosensitive ion channelchromosome CDS2335674 1134 + 0.567019
NA Rfer_2428 large conductance mechanosensitive channel proteinchromosome CDS2677476 429 - 0.529138
NA Rfer_1250 Nucleotidyl transferasechromosome CDS1344138 774 + 0.471576
NA Rfer_0206 OmpA/MotBchromosome CDS205013 654 - 0.626911
NA Rfer_2679 polysaccharide biosynthesis protein CapDchromosome CDS2947642 1944 + 0.602366
NA Rfer_1275 Lytic transglycosylase, catalyticchromosome CDS1368389 558 + 0.650538
NA Rfer_3423 D-alanine--D-alanine ligasechromosome CDS3807928 1041 - 0.652257
NA Rfer_0365 MltAchromosome CDS366160 1371 - 0.653538
NA Rfer_0727 peptidase M23Bchromosome CDS766405 1398 - 0.600858
NA Rfer_0714 dTDP-4-dehydrorhamnose reductasechromosome CDS755627 903 - 0.681063
NA Rfer_0850 Lytic murein transglycosylasechromosome CDS886897 1299 + 0.672055
NA Rfer_0483 Lytic transglycosylase, catalyticchromosome CDS500120 900 + 0.676667
NA Rfer_1259 glycosyl transferase, group 1chromosome CDS1353266 1116 + 0.564516
NA Rfer_1995 Peptidase M50, putative membrane-associated zinc metallopeptidasechromosome CDS2150342 1362 + 0.600587
NA Rfer_1461 Lytic transglycosylase, catalyticchromosome CDS1571071 1530 - 0.614379
NA Rfer_1923 prolipoprotein diacylglyceryl transferasechromosome CDS2065317 828 + 0.611111
NA Rfer_1998 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferasechromosome CDS2154582 990 + 0.584848
NA Rfer_3428 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS3814957 1179 - 0.592875
NA Rfer_3419 Monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS3803628 783 - 0.619413
NA Rfer_3430 UDP-N-acetylmuramyl-tripeptide synthetaseschromosome CDS3818229 1617 - 0.660482
NA Rfer_4237 KpsF/GutQ family proteinchromosome CDS4703476 1002 - 0.59481
NA Rfer_0920 Serine-type D-Ala-D-Ala carboxypeptidasechromosome CDS966327 1245 - 0.637751
NA Rfer_3851 putative capsule biosynthesis proteinchromosome CDS4300235 1140 - 0.673684
NA Rfer_0413 outer membrane efflux proteinchromosome CDS422676 1272 - 0.605346
NA Rfer_1854 Substrate-binding region of ABC-type glycine betaine transport systemchromosome CDS1995526 927 + 0.601942
NA Rfer_2691 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS2961843 1107 - 0.633243
NA Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS3813434 1521 - 0.662064
NA Rfer_0604 LrgB-like proteinchromosome CDS629533 726 - 0.688705
NA Rfer_1562 RfaE bifunctional protein, domain Ichromosome CDS1688216 951 - 0.61409
NA Rfer_1242 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS1337447 771 + 0.508431
NA Rfer_0319 OmpWchromosome CDS318065 702 - 0.574074
NA Rfer_0715 dTDP-glucose 4,6-dehydratasechromosome CDS756634 1062 - 0.617702
NA Rfer_3570 beta-lactamasechromosome CDS3969782 1440 + 0.667361
NA Rfer_3431 Peptidoglycan glycosyltransferasechromosome CDS3819845 1743 - 0.598394
NA Rfer_3422 cell division protein FtsQchromosome CDS3807146 786 - 0.643766
NA Rfer_1083 UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS1157165 1446 - 0.630705
NA Rfer_0079 AsmAchromosome CDS79028 2010 - 0.644279
NA Rfer_1153 OmpA/MotBchromosome CDS1238237 546 - 0.501832
NA Rfer_1791 peptidoglycan-binding LysMchromosome CDS1926798 2634 - 0.601367
NA Rfer_1314 Cyanophycin synthetasechromosome CDS1405656 2577 - 0.638339
NA Rfer_3997 glycosyl transferase, family 2chromosome CDS4459868 789 - 0.61597
NA Rfer_0453 dihydrodipicolinate synthetasechromosome CDS459314 930 - 0.629032
NA Rfer_2597 Glutamate racemasechromosome CDS2860702 816 + 0.628676
NA Rfer_3303 N-acetylmuramoyl-L-alanine amidasechromosome CDS3666648 1425 + 0.631579
NA Rfer_2678 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS2946962 552 + 0.581522
NA Rfer_0713 UDP-glucose 4-epimerasechromosome CDS754572 1020 - 0.647059
NA Rfer_1237 GDP-mannose 4,6-dehydratasechromosome CDS1331945 1104 + 0.577899
NA Rfer_2649 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS2914900 858 + 0.587413
NA Rfer_0451 NAD-dependent epimerase/dehydratasechromosome CDS456764 1056 - 0.641098
NA Rfer_1997 outer membrane chaperone Skp (OmpH)chromosome CDS2154035 525 + 0.531429
NA Rfer_1572 OmpA/MotBchromosome CDS1700935 639 + 0.533646
NA Rfer_1255 hypothetical proteinchromosome CDS1348669 1239 + 0.368039
NA Rfer_2997 Three-deoxy-D-manno-octulosonic-acidtransferase-likechromosome CDS3303740 1362 - 0.657122
NA Rfer_0689 DegT/DnrJ/EryC1/StrS aminotransferasechromosome CDS725343 1110 - 0.52973
NA Rfer_1263 sugar transferasechromosome CDS1357372 561 + 0.57041
NA Rfer_3429 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligasechromosome CDS3816125 1443 - 0.656272
NA Rfer_1251 NAD-dependent epimerase/dehydratasechromosome CDS1344920 1104 + 0.501812
NA Rfer_2545 Lytic murein transglycosylase Bchromosome CDS2805990 1071 + 0.64239
NA Rfer_2000 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS2156126 795 + 0.578616
NA Rfer_2784 glycosyl transferase, family 2chromosome CDS3071417 1983 - 0.640948
NA Rfer_1264 O-antigen polymerasechromosome CDS1358008 1668 - 0.598921
NA Rfer_0712 Nucleotidyl transferasechromosome CDS753416 1131 - 0.599469
NA Rfer_0677 O-antigen polymerasechromosome CDS706234 1311 + 0.537757
NA Rfer_3433 methyltransferasechromosome CDS3821925 930 - 0.61828
NA Rfer_2001 lipid-A-disaccharide synthasechromosome CDS2156944 1170 + 0.595726
NA Rfer_1996 surface antigen (D15)chromosome CDS2151696 2340 + 0.547863
NA Rfer_1260 NAD-dependent epimerase/dehydratasechromosome CDS1354551 1149 + 0.550914
NA Rfer_0675 glycosyl transferase, group 1chromosome CDS703735 1131 + 0.569408
NA Rfer_3356 UDP-N-acetylmuramatechromosome CDS3725928 1401 + 0.613847
NA Rfer_1088 Lytic transglycosylase, catalyticchromosome CDS1162563 1962 + 0.633537
NA Rfer_2500 membrane bound O-acyl transferase, MBOATchromosome CDS2762538 1473 - 0.629328
NA Rfer_4052 RfaE bifunctional protein, domain IIchromosome CDS4516782 513 + 0.666667
NA Rfer_2604 Type I secretion outer membrane protein, TolCchromosome CDS2868402 1329 + 0.629797
NA Rfer_0327 Lytic murein transglycosylasechromosome CDS326141 1305 - 0.669732
NA Rfer_1026 dihydrodipicolinate synthetasechromosome CDS1085585 930 - 0.632258
NA Rfer_3735 Twin-arginine translocation pathway signalchromosome CDS4165088 2184 - 0.599817
NA Rfer_3697 apolipoprotein N-acyltransferasechromosome CDS4130083 1725 - 0.652174
NA Rfer_2085 glycosyl transferase, group 1chromosome CDS2259845 1206 + 0.556385
NA Rfer_2100 NLP/P60chromosome CDS2274106 606 - 0.562706
NA Rfer_1514 RND efflux system, outer membrane lipoprotein, NodTchromosome CDS1630281 1452 + 0.636364
NA Rfer_0667 UDP-glucose/GDP-mannose dehydrogenasechromosome CDS692624 1281 + 0.552693
NA Rfer_0687 glycosyl transferase, family 2chromosome CDS723713 978 - 0.566462
NA Rfer_0668 glycosyl transferase, group 1chromosome CDS693905 1179 + 0.628499
NA Rfer_3727 Aspartate racemasechromosome CDS4158484 732 + 0.60929
NA Rfer_0191 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidasechromosome CDS188463 1500 + 0.678667
NA Rfer_1561 ADP-L-glycero-D-manno-heptose-6-epimerasechromosome CDS1687197 1023 - 0.57478
NA Rfer_2189 beta-lactamasechromosome CDS2387936 1209 - 0.611249
NA Rfer_0711 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerasechromosome CDS751893 1488 - 0.627688
NA Rfer_2944 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS3255905 1266 + 0.617694
NA Rfer_1882 OmpA/MotBchromosome CDS2018400 1164 + 0.575601
NA Rfer_1256 glycosyl transferase, family 2chromosome CDS1350323 876 + 0.341324
NA Rfer_3298 NAD-dependent epimerase/dehydratasechromosome CDS3661846 918 - 0.643791
NA Rfer_0917 Penicillin-binding protein 1Achromosome CDS961083 2259 - 0.572377
NA Rfer_3414 UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS3798640 924 + 0.626623
NA Rfer_1765 NmrA-likechromosome CDS1897283 1101 - 0.634877
NA Rfer_3108 Aspartate racemasechromosome CDS3447747 780 + 0.625641
NA Rfer_0656 NAD-dependent epimerase/dehydratasechromosome CDS680042 1008 + 0.5625
NA Rfer_0769 glycosyl transferase, family 39chromosome CDS806214 1569 + 0.634799
NA Rfer_1623 glycosyl transferase, family 2chromosome CDS1755675 675 + 0.586667
NA Rfer_3157 3-deoxy-D-manno-octulosonatecytidylyltransferasechromosome CDS3493414 774 + 0.667959
NA Rfer_2307 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthasechromosome CDS2530393 1275 - 0.552157
NA Rfer_2527 MscS Mechanosensitive ion channelchromosome CDS2785956 1284 - 0.622274
NA Rfer_2963 large conductance mechanosensitive channel proteinchromosome CDS3270266 429 - 0.561772
NA Rfer_2417 Cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS2660841 1245 - 0.606426
NA Rfer_3920 Peptidoglycan glycosyltransferasechromosome CDS4378252 2022 - 0.623145
NA Rfer_1401 GCN5-related N-acetyltransferasechromosome CDS1512352 525 - 0.6
NA Rfer_2677 glucose-1-phosphate thymidylyltransferasechromosome CDS2946076 879 + 0.590444