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2024-04-28 22:29:52

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Salinibacter ruber DSM 13855, DSM 13855; M31

Number of genes found: 174

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Salinibacter ruber DSM 13855, DSM 13855; M31
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SRU_1295 peptidase, M23/M37 familychromosome CDS1632203 1194 + 0.694305
NA SRU_0291 peptidoglycan N-acetylmuramoylhydrolasechromosome CDS384848 1938 - 0.716718
NA SRU_2402 glycosyl transferasechromosome CDS2995559 1173 - 0.707587
NA SRU_1967 TonB family C-terminal domain proteinchromosome CDS2433337 714 - 0.70028
NA SRU_0475 efflux transporter, RND family, MFP subunitchromosome CDS644373 1185 - 0.729958
NA SRU_1371 TonB, putativechromosome CDS1721257 735 - 0.632653
NA SRU_0383 epimerase/reductase, putativechromosome CDS523934 1008 - 0.702381
NA SRU_1978 outer membrane efflux family protein, putativechromosome CDS2444664 1413 + 0.69356
NA SRU_0927 outer membrane efflux proteinchromosome CDS1188889 1743 - 0.679862
NA SRU_0445 putative sulfolipid synthasechromosome CDS595679 1506 - 0.697875
NA SRU_0555 penicillin-binding protein 3chromosome CDS729827 1947 + 0.711351
NA SRU_0601 perosamine synthetase , putativechromosome CDS791369 1197 + 0.582289
NA SRU_0976 hypothetical proteinchromosome CDS1243338 1482 + 0.668691
NA SRU_0939 peptidase, M50 family proteinchromosome CDS1204241 1248 + 0.66266
NA SRU_2850 outer membrane efflux proteinchromosome CDS3527963 1413 - 0.679406
NA SRU_0654 hypothetical proteinchromosome CDS853483 465 + 0.68172
NA SRU_1174 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family proteinchromosome CDS1482716 1020 - 0.708824
NA SRU_1192 TonB family C-terminal domain proteinchromosome CDS1503584 1695 - 0.687316
NA SRU_1183 putative membrane efflux proteinchromosome CDS1494328 1323 - 0.668934
NA SRU_0084 putative transport/efflux transmembrane proteinchromosome CDS100404 1176 + 0.706633
NA SRU_0261 osteoblast specific factor 2-related proteinchromosome CDS348791 564 + 0.634752
NA SRU_2709 probable nucleotide sugar dehydrogenasechromosome CDS3345544 1389 - 0.650828
NA SRU_1840 transporter, small conductance mechanosensitive ion channel (MscS) familychromosome CDS2274471 1035 + 0.649275
NA SRU_1960 hypothetical proteinchromosome CDS2424397 1299 + 0.681293
NA SRU_0199 glycosyl transferasechromosome CDS274156 411 + 0.652068
NA SRU_0620 putative colanic acid biosynthesis glycosyl transferasechromosome CDS816448 1368 + 0.619152
NA SRU_2808 dopamine receptor D4chromosome CDS3466589 498 + 0.710843
NA SRU_0906 conserved proteinchromosome CDS1164139 972 - 0.653292
NA SRU_0602 UDP-N-acetylglucosamine 2-epimerasechromosome CDS792693 1173 + 0.526854
NA SRU_2318 glycosyl transferase, group 2 family proteinchromosome CDS2888253 828 - 0.708937
NA SRU_2659 N-acetylmuramoyl-L-alanine amidasechromosome CDS3296230 597 + 0.730318
NA SRU_2197 D-alanine--D-alanine ligasechromosome CDS2721540 1305 - 0.699617
NA SRU_0616 glycosyl transferase, group 1 family proteinchromosome CDS809851 1197 + 0.422723
NA SRU_1690 3-beta hydroxysteroid dehydrogenase/isomerase familychromosome CDS2099074 1065 + 0.71831
NA SRU_0346 OmpA family proteinchromosome CDS464218 693 - 0.686869
NA SRU_1569 Outer membrane lipoprotein carrier protein LolAchromosome CDS1951443 642 + 0.697819
NA SRU_0724 putative HlyD-like secretion proteinchromosome CDS936579 1113 + 0.705301
NA SRU_0608 CMP-N-acetlyneuraminic acid synthetasechromosome CDS798197 711 + 0.575246
NA SRU_0281 glycosyl transferase, group 1 family proteinchromosome CDS377533 1164 - 0.737972
NA SRU_0083 cation efflux system protein, putativechromosome CDS98069 2361 + 0.740788
NA SRU_2414 beta-Ig-H3/Fasciclin domainchromosome CDS3012621 921 - 0.62975
NA SRU_0019 membrane protein, putativechromosome CDS19634 1260 + 0.684127
NA SRU_0634 NAD dependent epimerase/dehydratase family proteinchromosome CDS832683 984 + 0.653455
NA SRU_1262 outer membrane protein, OMP85 family, putativechromosome CDS1589489 2124 - 0.675141
NA SRU_0621 probable glycosyltransferasechromosome CDS818100 1827 + 0.650246
NA SRU_2751 outer membrane efflux proteinchromosome CDS3406023 1617 - 0.705628
NA SRU_0619 UDP-glucuronate 5'-epimerasechromosome CDS815116 984 + 0.594512
NA SRU_0510 TonBchromosome CDS683629 495 + 0.618182
NA SRU_2018 conserved hypothetical proteinchromosome CDS2498447 864 - 0.66088
NA SRU_2118 hypothetical proteinchromosome CDS2619389 405 + 0.68642
NA SRU_0726 putative outer membrane protein TolCchromosome CDS941052 1404 + 0.692308
NA SRU_0452 M23 peptidase domain proteinchromosome CDS606864 1137 - 0.690413
NA SRU_2849 membrane fusion efflux protein, putativechromosome CDS3526547 1398 - 0.69671
NA SRU_1848 membrane-associated zinc metalloprotease, putativechromosome CDS2282874 1443 - 0.659044
NA SRU_0392 TonB-dependent receptor domain proteinchromosome CDS534054 2184 + 0.688187
NA SRU_0594 Chain length determinant proteinchromosome CDS781369 1308 + 0.578746
NA SRU_1325 nucleotidyl transferase, putativechromosome CDS1668363 882 - 0.71542
NA SRU_1671 hypothetical proteinchromosome CDS2073878 1149 + 0.664056
NA SRU_0061 glucose inhibited division protein Bchromosome CDS59754 648 + 0.694444
NA SRU_1427 glycosyl transferase, group 2 family proteinchromosome CDS1780784 1101 - 0.672116
NA SRU_0600 nucleoside-diphosphate-sugar epimerasechromosome CDS790352 996 + 0.624498
NA SRU_2822 hypothetical proteinchromosome CDS3485357 612 - 0.55719
NA SRU_0908 peptidase, M23/M37 familychromosome CDS1166105 783 + 0.679438
NA SRU_2167 outer membrane protein, OMP85 family, putativechromosome CDS2679769 2709 - 0.693983
NA SRU_2176 fasciclin domain proteinchromosome CDS2693199 1224 - 0.570261
NA SRU_2003 NAD dependent epimerase/dehydratase familychromosome CDS2476043 852 - 0.687793
NA SRU_2666 glycosyl transferase, group 1 family proteinchromosome CDS3305054 1074 - 0.743948
NA SRU_0891 transporter, small conductance mechanosensitive ion channel (MscS) familychromosome CDS1142856 1116 + 0.696237
NA SRU_1135 D-ala D-ala ligase C-terminus superfamilychromosome CDS1428220 885 - 0.705085
NA SRU_2705 small-conductance mechanosensitive channel, putativechromosome CDS3342582 825 + 0.638788
NA SRU_2168 putative peptidasechromosome CDS2682543 1059 - 0.639282
NA SRU_0224 putative colanic acid biosynthesis glycosyl transferasechromosome CDS292776 1257 + 0.67144
NA SRU_0926 efflux transporter, RND family, MFP subunitchromosome CDS1187630 1203 - 0.684954
NA SRU_0296 peptidase, S41 familychromosome CDS389188 1920 - 0.654167
NA SRU_1507 conserved hypothetical proteinchromosome CDS1876321 915 - 0.648087
NA SRU_1003 glycosyl transferase, group 1 family protein, putativechromosome CDS1280800 1059 + 0.646837
NA SRU_2085 glycosyl transferase, group 1 family proteinchromosome CDS2580063 1149 + 0.640557
NA SRU_0881 hypothetical proteinchromosome CDS1124501 795 - 0.651572
NA SRU_0618 sugar epimerase BlmGchromosome CDS813785 1143 + 0.620297
NA SRU_0266 putative glycosyl transferase N-acetylglucosaminyltransferase), RgpGchromosome CDS356818 1263 - 0.682502
NA SRU_2209 osteoblast specific factor 2-related proteinchromosome CDS2740042 540 + 0.672222
NA SRU_0254 glycosyl transferase, group 2 family proteinchromosome CDS338747 1305 + 0.591571
NA SRU_1332 hypothetical proteinchromosome CDS1677060 1440 - 0.663889
NA SRU_2600 soluble lytic murein transglycosylase precursorchromosome CDS3228614 684 - 0.730994
NA SRU_1641 cell shape-determining protein MreC, putativechromosome CDS2042243 753 + 0.678619
NA SRU_2825 cation efflux system protein CzcB-like proteinchromosome CDS3490298 1110 + 0.717117
NA SRU_2423 putative glucosyltransferasechromosome CDS3025906 1533 + 0.720809
NA SRU_1271 pilin glycosylation enzyme, putativechromosome CDS1603943 1521 + 0.613412
NA SRU_0998 conserved hypothetical proteinchromosome CDS1275465 1203 + 0.684123
NA SRU_1306 transporter, small conductance mechanosensitive ion channel (MscS) familychromosome CDS1646054 927 - 0.61165
NA SRU_1854 dTDP-4-dehydrorhamnose reductasechromosome CDS2290114 924 + 0.681818
NA SRU_0444 glycosyl transferase, group 1 family proteinchromosome CDS594438 1146 - 0.732984
NA SRU_2707 transmembrane proteinchromosome CDS3344199 306 + 0.69281
NA SRU_1198 transporter, small conductance mechanosensitive ion channel (MscS) familychromosome CDS1509440 942 - 0.680467
NA SRU_2342 Mur ligase family, glutamate ligase domain proteinchromosome CDS2915221 1632 + 0.682598
NA SRU_0262 TonB, putativechromosome CDS352939 390 - 0.674359
NA SRU_1071 conserved hypothetical proteinchromosome CDS1342818 1152 - 0.669271
NA SRU_2497 N-acetylmuramoyl-L-alanine amidase-like proteinchromosome CDS3102053 1287 - 0.671329
NA SRU_1939 conserved hypothetical proteinchromosome CDS2397738 1290 - 0.717054
NA SRU_2576 putative poly-gamma-glutamate biosynthesis enzymechromosome CDS3200844 1059 + 0.708215
NA SRU_0893 hypothetical proteinchromosome CDS1146515 2766 + 0.723066
NA SRU_0476 putative outer membrane efflux proteinchromosome CDS645682 1449 - 0.719807
NA SRU_0622 putative glycosyltransferasechromosome CDS820642 753 + 0.569721
NA SRU_0596 UDP-glucose dehydrogenasechromosome CDS784284 1320 + 0.65303
NA SRU_0909 Protein of unknown function, DUF583 familychromosome CDS1166938 501 + 0.630738
NA SRU_1845 outer membrane protein OmpH, putativechromosome CDS2278507 609 - 0.655172
NA SRU_2841 putative outer membrane protein, probably involved in nutrient bindingchromosome CDS3511699 3045 + 0.602627
NA SRU_0361 putative alpha-amylasechromosome CDS490677 4029 + 0.608588
NA SRU_1023 NAD dependent epimerase/dehydratase familychromosome CDS1302475 1530 - 0.682353
NA SRU_1979 acriflavin resistance protein AcrE, putativechromosome CDS2446098 1122 + 0.706774
NA SRU_0918 nucleoside-diphosphate-sugar epimerasechromosome CDS1174474 1467 + 0.702795
NA SRU_2117 outer membrane protein, OMP85 family, putativechromosome CDS2617579 1812 - 0.714128
NA SRU_1126 hypothetical proteinchromosome CDS1418131 924 - 0.602814
NA SRU_0562 ftsQ protein, putativechromosome CDS740099 780 + 0.729487
NA SRU_2407 glycosyl transferase, group 2 family proteinchromosome CDS3002042 963 - 0.668743
NA SRU_1407 outer membrane efflux proteinchromosome CDS1759861 1497 - 0.672679
NA SRU_2665 hypothetical proteinchromosome CDS3303262 1785 + 0.705882
NA SRU_0597 UDP-glucuronate decarboxylasechromosome CDS785762 969 + 0.649123
NA SRU_2867 hypothetical proteinchromosome CDS3548671 366 + 0.636612
NA SRU_2248 osteoblast specific factor 2-related proteinchromosome CDS2786587 1404 + 0.625356
NA SRU_2708 UDP-glucuronate decarboxylasechromosome CDS3344530 966 - 0.663561
NA SRU_2824 probable cobalt-zinc-cadmium outer membrane resistance protein, putativechromosome CDS3488914 1287 + 0.738928
NA SRU_1846 outer membrane protein, putativechromosome CDS2279173 2535 - 0.639053
NA SRU_2474 transmembrane proteinchromosome CDS3075988 1524 + 0.700131
NA SRU_0686 transglycosylase domain proteinchromosome CDS891778 2376 + 0.673401
NA SRU_2036 fasciclin domain proteinchromosome CDS2520369 588 + 0.714286
NA SRU_1930 glycosyl transferasechromosome CDS2387901 1308 + 0.69419
NA SRU_1972 glycosyl transferase, group 2 family proteinchromosome CDS2439217 882 + 0.670068
NA SRU_0599 NDP-sugar dehydrogenase, putativechromosome CDS788880 1476 + 0.579268
NA SRU_1408 HlyD family secretion proteinchromosome CDS1761407 1206 - 0.692371
NA SRU_0201 putative colanic acid biosynthesis glycosyl transferasechromosome CDS275875 648 + 0.623457
NA SRU_0592 capsule polysaccharide export system periplasmic proteinchromosome CDS775936 2955 + 0.60643
NA SRU_0808 transporter, small conductance mechanosensitive ion channel (MscS) familychromosome CDS1027509 879 - 0.643914
NA SRU_0104 LysM domain proteinchromosome CDS136108 1056 + 0.730114
NA SRU_0995 NAD dependent epimerase/dehydratase familychromosome CDS1270179 645 + 0.696124
NA SRU_2435 Protein of unknown function, DUF583 familychromosome CDS3042241 720 + 0.681944
NA SRU_1435 putative dihydrodipicolinate synthasechromosome CDS1786944 939 - 0.70181
NA SRU_1516 putative permease domain proteinchromosome CDS1885132 1359 - 0.621045
NA SRU_0784 conserved hypothetical proteinchromosome CDS994617 3000 - 0.665333
NA SRU_1194 glycosyl transferase-related proteinchromosome CDS1505782 714 - 0.691877
alr SRU_0573 alanine racemasechromosome CDS754644 1353 + 0.719143
ctp SRU_1943 carboxyl-terminal proteasechromosome CDS2404732 1611 - 0.647424
dacB SRU_1748 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidasechromosome CDS2159220 1497 - 0.693387
dacB SRU_1078 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidasechromosome CDS1348178 1434 + 0.670851
dapA SRU_1080 dihydrodipicolinate synthasechromosome CDS1350168 909 - 0.69967
dfrA SRU_0829 dihydroflavonol 4-reductasechromosome CDS1050649 1035 + 0.727536
galE SRU_1772 UDP-glucose 4-epimerasechromosome CDS2189042 987 - 0.646403
glmS SRU_1363 glucosamine--fructose-6-phosphate aminotransferase, isomerizingchromosome CDS1711732 1944 + 0.647119
graD SRU_0651 glucose-1-phosphate thymidylyltransferasechromosome CDS848219 1176 + 0.688776
ispH SRU_1880 4-hydroxy-3-methylbut-2-enyl diphosphate reductasechromosome CDS2321348 1242 + 0.644928
lepA SRU_0405 GTP-binding protein LepAchromosome CDS548658 1815 + 0.646832
lgt SRU_0984 prolipoprotein diacylglyceryl transferasechromosome CDS1257439 828 - 0.648551
lnt SRU_0260 apolipoprotein N-acyltransferasechromosome CDS346834 1536 - 0.66276
lspA SRU_0404 signal peptidase (SPase) IIchromosome CDS547763 738 + 0.689702
manC SRU_0567 mannose-1-phosphate guanylyltransferasechromosome CDS747297 1071 + 0.666667
menC SRU_1354 o-succinylbenzoic acid (OSB) synthetasechromosome CDS1702374 1101 + 0.710263
mpl SRU_0923 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS1180608 1476 - 0.713415
mraW SRU_0553 S-adenosyl-methyltransferase MraWchromosome CDS728212 1011 + 0.707221
mraY SRU_0557 phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS733374 1158 + 0.647668
mrdA SRU_2384 penicillin-binding protein 2chromosome CDS2966166 1941 + 0.690366
murA SRU_1859 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS2295679 1428 + 0.678571
murB SRU_2184 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS2709327 1158 + 0.672712
murC SRU_0561 UDP-N-acetylmuramate--alanine ligasechromosome CDS738524 1428 + 0.684174
murD SRU_0558 UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS734603 1383 + 0.680405
murE SRU_0556 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligasechromosome CDS731748 1569 + 0.713193
murG SRU_0560 undecaprenyldiphospho-muramoylpentapeptidebeta-N-acetylglucosaminyltransferasechromosome CDS737331 1113 + 0.716981
prc SRU_0779 carboxy-terminal peptidasechromosome CDS989874 1656 + 0.708333
rfbA SRU_0589 glucose-1-phosphate thymidylyltransferasechromosome CDS773169 933 + 0.66881
rfbB SRU_0588 dTDP-glucose 4,6-dehydratasechromosome CDS771918 1029 + 0.654033
rfbC SRU_0590 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS774130 561 + 0.675579
rfbD SRU_0591 dTDP-4-dehydrorhamnose reductasechromosome CDS774703 909 + 0.743674
rfbQ SRU_1001 rhamnosyl transferasechromosome CDS1279576 945 - 0.635979
rlpA SRU_2140 rare lipoprotein Achromosome CDS2646943 624 - 0.660256
spsE SRU_0605 sialic acid synthasechromosome CDS795442 1071 + 0.583567