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2024-05-08 04:51:38

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 194

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_2396 Secretion protein HlyDchromosome CDS2469164 1041 + 0.696446
NA Tbd_2697 type I secretion outer membrane protein, TolCchromosome CDS2778336 1314 + 0.677321
NA Tbd_2207 putative TonB proteinchromosome CDS2287280 873 - 0.682703
NA Tbd_1777 dTDP-4-dehydrorhamnose reductasechromosome CDS1876923 894 - 0.689038
NA Tbd_2584 apolipoprotein N-acyltransferasechromosome CDS2659209 1563 + 0.692898
NA Tbd_0848 hypothetical proteinchromosome CDS896951 1089 - 0.660239
NA Tbd_0614 glycosyltransferasechromosome CDS643360 978 - 0.696319
NA Tbd_1505 3-deoxy-D-manno-octulosonatecytidylyltransferasechromosome CDS1594649 759 - 0.695652
NA Tbd_0620 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS652259 843 + 0.660735
NA Tbd_2454 outer membrane proteinchromosome CDS2525239 1209 - 0.713813
NA Tbd_1874 conserved hypothetical proteinchromosome CDS1970800 750 - 0.602667
NA Tbd_1867 conserved hypothetical proteinchromosome CDS1962818 984 + 0.695122
NA Tbd_1109 cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS1166790 1209 + 0.659222
NA Tbd_1897 putative Outer membrane proteinchromosome CDS1994288 1362 - 0.661527
NA Tbd_2232 membrane-bound lytic murein transglycosylase Achromosome CDS2311277 1203 + 0.695761
NA Tbd_1334 Secretion protein HlyDchromosome CDS1417804 1494 - 0.695448
NA Tbd_0910 TonB proteinchromosome CDS966718 705 + 0.744681
NA Tbd_0963 ADP-L-glycero-D-manno-heptose-6-epimerasechromosome CDS1025200 999 + 0.636637
NA Tbd_0900 hypothetical proteinchromosome CDS952092 855 + 0.676023
NA Tbd_1795 polysaccharide export outer membrane proteinchromosome CDS1896480 795 - 0.616352
NA Tbd_1860 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, LytB proteinchromosome CDS1954347 927 + 0.642934
NA Tbd_0127 outer membrane proteinchromosome CDS136341 1248 + 0.678686
NA Tbd_2257 hypothetical proteinchromosome CDS2331727 405 - 0.646914
NA Tbd_1875 glycosyl transferase, group 2 family proteinchromosome CDS1971546 726 - 0.589532
NA Tbd_0116 Phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS123638 1086 + 0.638122
NA Tbd_1878 ABC transporter permease proteinchromosome CDS1975254 816 - 0.530637
NA Tbd_0121 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS129937 975 + 0.701538
NA Tbd_1747 hypothetical proteinchromosome CDS1837091 1692 - 0.70331
NA Tbd_2254 conserved hypothetical proteinchromosome CDS2328534 1899 - 0.690363
NA Tbd_1794 chain length determinant proteinchromosome CDS1895030 1386 - 0.62482
NA Tbd_1870 heptosyltransferase family proteinchromosome CDS1966002 1059 - 0.677998
NA Tbd_2455 large-conductance mechanosensitive channelchromosome CDS2526564 426 - 0.63615
NA Tbd_1099 uncharacterized lipoproteinchromosome CDS1158233 1104 + 0.655797
NA Tbd_0113 peptidoglycan glycosyltransferasechromosome CDS118991 1734 + 0.690888
NA Tbd_1748 putative outer membrane proteinchromosome CDS1838779 1188 - 0.69697
NA Tbd_2505 monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS2577571 699 + 0.640916
NA Tbd_1858 peptidase A8, signal peptidase IIchromosome CDS1953426 474 + 0.649789
NA Tbd_1416 RND efflux system outer membrane lipoprotein NodTchromosome CDS1503810 1410 - 0.711348
NA Tbd_2731 prolipoprotein diacylglyceryl transferasechromosome CDS2811677 852 + 0.683099
NA Tbd_2761 putative outer membrane proteinchromosome CDS2839660 840 - 0.684524
NA Tbd_0262 hypothetical proteinchromosome CDS283169 501 + 0.670659
NA Tbd_1414 Secretion protein HlyDchromosome CDS1500956 1293 - 0.711524
NA Tbd_0306 arylsulfatasechromosome CDS327923 3126 - 0.692258
NA Tbd_2562 putative oxidoreductase proteinchromosome CDS2636563 876 - 0.688356
NA Tbd_1873 putative UDP-glucose 4-epimerasechromosome CDS1969883 921 - 0.662324
NA Tbd_1497 outer membrane lipoprotein carrier protein LolAchromosome CDS1588265 609 - 0.658457
NA Tbd_0083 D-alanyl-D-alanine carboxypeptidase-like proteinchromosome CDS85295 966 - 0.660455
NA Tbd_0797 Acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS840041 777 + 0.661519
NA Tbd_0737 glycosyl transferase probable ADP-heptose:LPS heptosyltransferasechromosome CDS779857 1113 + 0.744834
NA Tbd_1784 probable glycosyltransferasechromosome CDS1883495 1206 - 0.587894
NA Tbd_2572 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS2646358 1401 + 0.673804
NA Tbd_1098 dihydrodipicolinate synthasechromosome CDS1157283 891 + 0.659933
NA Tbd_1933 conserved hypothetical proteinchromosome CDS2028402 1272 + 0.720912
NA Tbd_2362 SLT domain proteinchromosome CDS2435965 1965 - 0.691603
NA Tbd_0099 NAD-dependent epimerase/dehydratasechromosome CDS105540 1029 + 0.659864
NA Tbd_2115 RND multidrug efflux membrane fusion protein MexE precursorchromosome CDS2204167 522 - 0.722222
NA Tbd_0901 Secretion protein HlyDchromosome CDS952936 1314 + 0.697869
NA Tbd_1508 tetraacyldisaccharide-1-P 4'-kinasechromosome CDS1596725 990 - 0.719192
NA Tbd_0992 conserved hypothetical proteinchromosome CDS1058017 513 - 0.668616
NA Tbd_1329 probable cobalt-zinc-cadmium outer membrane resistance proteinchromosome CDS1411877 1278 - 0.684664
NA Tbd_0286 UDP-N-acetylglucosamine 2-epimerasechromosome CDS303976 1116 + 0.680108
NA Tbd_2532 Secretion protein HlyDchromosome CDS2603816 1080 - 0.739815
NA Tbd_1312 probable periplasmic glucans biosynthesis transmembrane proteinchromosome CDS1391516 2214 + 0.699639
NA Tbd_0096 phospholipasechromosome CDS102280 1059 + 0.643059
NA Tbd_0740 putative glycosyl transferasechromosome CDS784173 1329 + 0.699022
NA Tbd_0458 peptidase family proteinchromosome CDS475017 1317 - 0.659833
NA Tbd_0308 glycosyltransferasechromosome CDS331980 930 - 0.686022
NA Tbd_1882 hypothetical proteinchromosome CDS1979373 2460 - 0.584553
NA Tbd_0385 outer membrane lipoprotein LolBchromosome CDS413982 561 + 0.734403
NA Tbd_0314 hypothetical proteinchromosome CDS338074 1110 - 0.692793
NA Tbd_1356 RND efflux system outer membrane lipoprotein NodTchromosome CDS1436467 1506 - 0.711155
NA Tbd_2337 organic solvent tolerance transmembrane proteinchromosome CDS2410789 2187 + 0.653864
NA Tbd_2795 outer membrane proteinchromosome CDS2877364 801 - 0.686642
NA Tbd_0126 UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS135223 915 + 0.639344
NA Tbd_0201 peptidoglycan glycosyltransferasechromosome CDS217797 2382 - 0.666247
NA Tbd_0291 glycosyl transferase, group 1chromosome CDS309748 1149 + 0.690165
NA Tbd_2321 putative secretion proteinchromosome CDS2396006 1386 - 0.737374
NA Tbd_0170 outer membrane lipoprotein, putativechromosome CDS183821 465 - 0.711828
NA Tbd_1884 putative nucleoside-diphosphate-sugar epimeraseschromosome CDS1983099 981 - 0.585117
NA Tbd_2089 GTPase LepAchromosome CDS2180703 1800 - 0.635
NA Tbd_2595 conserved hypothetical transmembrane proteinchromosome CDS2670338 1269 - 0.687943
NA Tbd_1171 hypothetical proteinchromosome CDS1223183 573 - 0.638743
NA Tbd_0837 peptidoglycan-binding protein LysMchromosome CDS887390 930 + 0.7
NA Tbd_1666 peptidoglycan-binding protein LysMchromosome CDS1749531 1506 + 0.664675
NA Tbd_2444 putative lipoprotein B precursor transmembranechromosome CDS2513215 492 - 0.678862
NA Tbd_0122 D-alanine--D-alanine ligasechromosome CDS130908 933 + 0.675241
NA Tbd_2064 nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase)chromosome CDS2156459 984 + 0.677846
NA Tbd_1581 Secretion protein HlyDchromosome CDS1664418 1191 - 0.735516
NA Tbd_2462 probable transmembrane proteinchromosome CDS2532867 3288 + 0.687044
NA Tbd_0142 Secretion protein HlyDchromosome CDS150379 1074 + 0.740223
NA Tbd_0117 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS124878 1425 + 0.698947
NA Tbd_0041 conserved hypothetical proteinchromosome CDS42112 1560 + 0.708333
NA Tbd_0282 polysaccharide chain length determinant proteinchromosome CDS298888 1536 + 0.653646
NA Tbd_2522 lipid A biosynthesis lauroyl acyltransferasechromosome CDS2594194 864 + 0.701389
NA Tbd_1879 putative dehydratase RfbHchromosome CDS1976102 1323 - 0.541194
NA Tbd_2100 alanine racemasechromosome CDS2190267 1104 - 0.688406
NA Tbd_1877 ABC transporter ATPasechromosome CDS1974523 729 - 0.563786
NA Tbd_2699 nucleoside-diphosphate-sugar epimerasechromosome CDS2781180 1011 + 0.615232
NA Tbd_0302 glycosyltransferasechromosome CDS324060 1152 + 0.703125
NA Tbd_2807 glucose inhibited division proteinchromosome CDS2887271 627 - 0.671451
NA Tbd_0261 Rod shape-determining protein MreC, subtypechromosome CDS282327 846 + 0.6974
NA Tbd_1888 hypothetical proteinchromosome CDS1986809 1248 - 0.592949
NA Tbd_0625 UTP--glucose-1-phosphate uridylyltransferasechromosome CDS658040 870 + 0.641379
NA Tbd_0120 UDP-N-acetylmuramate--alanine ligasechromosome CDS128556 1392 + 0.681753
NA Tbd_2268 TonB domain proteinchromosome CDS2339560 852 - 0.734742
NA Tbd_2700 hypothetical proteinchromosome CDS2782628 675 + 0.644444
NA Tbd_2139 putative lipopolysaccharide core biosynthesis glycosyl transferase proteinchromosome CDS2224932 1095 + 0.70411
NA Tbd_2759 glycosyl transferase, family 2chromosome CDS2838054 783 - 0.703704
NA Tbd_0833 conserved hypothetical proteinchromosome CDS880137 1758 + 0.713311
NA Tbd_0119 N-acetylglucosaminyltransferase, MurGchromosome CDS127459 1101 + 0.731153
NA Tbd_2320 Secretion protein HlyDchromosome CDS2394864 1146 - 0.74171
NA Tbd_1047 cyclopropane fatty acyl phospholipid synthasechromosome CDS1112560 1170 + 0.637607
NA Tbd_0962 RfaE bifunctional protein, domain Ichromosome CDS1024259 945 + 0.677249
NA Tbd_1471 conserved hypothetical proteinchromosome CDS1555040 2493 + 0.686723
NA Tbd_0743 glycosyltransferasechromosome CDS787236 993 + 0.689829
NA Tbd_2341 conserved hypothetical proteinchromosome CDS2416279 678 + 0.641593
NA Tbd_0309 glycosyltransferasechromosome CDS333036 957 - 0.700104
NA Tbd_1418 Secretion protein HlyDchromosome CDS1508390 1203 - 0.705736
NA Tbd_0105 Cytidyltransferasechromosome CDS112581 480 - 0.685417
NA Tbd_0792 peptidase M50, putative membrane-associated zinc metallopeptidasechromosome CDS834357 1365 + 0.665201
NA Tbd_0738 putative LPS biosynthesis related glycosyltransferasechromosome CDS780903 1044 - 0.742337
NA Tbd_0793 surface antigen (D15)chromosome CDS835718 2313 + 0.63208
NA Tbd_1776 GDP-mannose 4,6-dehydratasechromosome CDS1875749 1086 - 0.628913
NA Tbd_0266 serine-type D-ala-D-ala carboxypeptidasechromosome CDS287620 1134 + 0.683421
NA Tbd_1534 putative glycosyltransferasechromosome CDS1618511 1599 - 0.700438
NA Tbd_0123 cell division transmembrane proteinchromosome CDS131837 777 + 0.71686
NA Tbd_0061 lytic murein transglycosylasechromosome CDS65522 1305 + 0.704981
NA Tbd_1519 N-acetylmuramoyl-L-alanine amidasechromosome CDS1606593 1257 - 0.661098
NA Tbd_0294 glycosyl transferase, group 1chromosome CDS314050 1242 + 0.721417
NA Tbd_1462 small-conductance mechanosensitive channel proteinchromosome CDS1546750 1122 + 0.643494
NA Tbd_0098 UDP-glucose/GDP-mannose dehydrogenasechromosome CDS104260 1281 + 0.649493
NA Tbd_0499 mechanosensitive ion channelchromosome CDS519183 966 + 0.671843
NA Tbd_0281 polysaccharide export outer membrane proteinchromosome CDS298185 624 + 0.649038
NA Tbd_1629 mannosyl-glycoproteinendo-beta-N-acetylglucosamidasechromosome CDS1715795 885 - 0.712994
NA Tbd_2361 nucleoside-diphosphate-sugar epimeraseschromosome CDS2434884 1038 - 0.67052
NA Tbd_0742 ADP-heptose--LPS heptosyltransferase IIchromosome CDS786076 1182 + 0.721658
NA Tbd_1464 conserved hypothetical proteinchromosome CDS1548360 1173 - 0.69821
NA Tbd_0647 serine-type D-ala-D-ala-carboxypeptidasechromosome CDS687863 1209 + 0.66584
NA Tbd_0263 peptidoglycan glycosyltransferasechromosome CDS283766 1893 + 0.682515
NA Tbd_1872 putative undecaprenyl phosphate N-acetylglucosaminyltransferasechromosome CDS1968924 963 - 0.657321
NA Tbd_0140 conserved hypothetical proteinchromosome CDS147894 1902 - 0.683491
NA Tbd_1415 RND efflux system outer membrane lipoprotein NodTchromosome CDS1502245 1563 - 0.710813
NA Tbd_0199 putative glycosyltransferasechromosome CDS215666 1395 - 0.65233
NA Tbd_1881 alpha-D-glucose-1-phosphate cytidylyltransferasechromosome CDS1978510 759 - 0.592885
NA Tbd_2793 glucosamine-fructose-6-phosphate aminotransferase, isomerisingchromosome CDS2873968 1830 - 0.668306
NA Tbd_1328 Secretion protein HlyDchromosome CDS1410356 1512 - 0.632937
NA Tbd_1259 CmpX proteinchromosome CDS1321084 666 - 0.626126
NA Tbd_0111 methyltransferasechromosome CDS117689 936 + 0.694444
NA Tbd_1761 lipoprotein releasing system, transmembrane protein, LolC/E familychromosome CDS1854174 1245 - 0.638554
NA Tbd_0448 outer membrane protein (porin)chromosome CDS468255 1089 + 0.641873
NA Tbd_2698 probable 3-deoxy-D-manno-octulosonic-acid transferase transmembrane proteinchromosome CDS2779657 1263 - 0.727633
NA Tbd_0961 UDP-glucose dehydrogenasechromosome CDS1022931 1323 + 0.654573
NA Tbd_1536 glycosyltransferase, group 2 family proteinchromosome CDS1620819 750 - 0.669333
NA Tbd_1891 UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS1990106 1254 - 0.685008
NA Tbd_0265 rare lipoprotein Achromosome CDS286763 861 + 0.678281
NA Tbd_2113 conserved hypothetical proteinchromosome CDS2202311 633 + 0.690363
NA Tbd_2794 glucoamine-1-phosphate N-acetyltransferase, UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS2875800 1377 - 0.681191
NA Tbd_0798 lipid-A-disaccharide synthasechromosome CDS840829 1119 + 0.700626
NA Tbd_2392 peptidase S41A, proteasechromosome CDS2463995 1407 - 0.648188
NA Tbd_1779 glucose-1-phosphate thymidylyltransferase, long formchromosome CDS1878398 882 - 0.624717
NA Tbd_0244 probable outer membrane proteinchromosome CDS266868 996 + 0.692771
NA Tbd_0795 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxDchromosome CDS838568 1032 + 0.678295
NA Tbd_0301 glycosyltransferasechromosome CDS323126 930 + 0.71828
NA Tbd_1781 glycosyltransferase, RfaGchromosome CDS1880384 1098 - 0.643898
NA Tbd_1084 HlyD family secretion proteinchromosome CDS1144110 1071 - 0.713352
NA Tbd_2576 TonB-like proteinchromosome CDS2651038 885 + 0.646328
NA Tbd_1778 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS1877813 543 - 0.622468
NA Tbd_2205 outer membrane protein, porin-associated lipoproteinchromosome CDS2285249 567 - 0.656085
NA Tbd_1801 undecaprenyl-phosphategalactosephosphotransferasechromosome CDS1903189 1383 - 0.642806
NA Tbd_1522 glutamate racemasechromosome CDS1610025 798 + 0.64787
NA Tbd_0289 glycosyl transferases group 1chromosome CDS306987 1221 + 0.708436
NA Tbd_0305 glycosyltransferasechromosome CDS326880 1026 + 0.664717
NA Tbd_1780 dTDP-glucose 4,6-dehydratasechromosome CDS1879276 1068 - 0.633895
NA Tbd_1335 heavy metal RND efflux outer membrane protein, CzcC familychromosome CDS1419294 1290 - 0.68062
NA Tbd_1871 putative epimerase/dehydratase polysaccharide-related biosynthesis proteinchromosome CDS1967090 1845 - 0.664499
NA Tbd_0101 peptidase S13, D-Ala-D-Ala carboxypeptidase Cchromosome CDS108358 1467 + 0.693252
NA Tbd_2116 conserved hypothetical proteinchromosome CDS2204688 1263 - 0.674584
NA Tbd_0115 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligasechromosome CDS122241 1395 + 0.683154
NA Tbd_1196 outer membrane lipoproteinchromosome CDS1258739 522 - 0.726054
NA Tbd_1880 CDP-glucose 4,6-dehydratasechromosome CDS1977449 1077 - 0.622098
NA Tbd_1080 conserved hypothetical proteinchromosome CDS1140016 1053 - 0.694207
NA Tbd_0114 UDP-N-acetylmuramyl-tripeptide synthetasechromosome CDS120724 1521 + 0.704799
NA Tbd_1361 RND efflux membrane proteinchromosome CDS1440704 1152 - 0.705729
NA Tbd_1230 extracellular solute-binding protein, family 3chromosome CDS1288506 1413 - 0.665251
NA Tbd_2523 lipid A biosynthesis lauroyl acyltransferasechromosome CDS2595054 912 + 0.685307
NA Tbd_2335 putative nucleotidyl transferasechromosome CDS2409044 714 - 0.689076
NA Tbd_0794 putative outer membrane proteinchromosome CDS838055 504 + 0.638889
NA Tbd_0713 periplasmic protein TonBchromosome CDS751178 843 - 0.730724
NA Tbd_0172 diacylglycerol kinasechromosome CDS185436 378 - 0.669312
NA Tbd_1783 glucosyltransferase proteinchromosome CDS1882473 1026 - 0.560429
NA Tbd_1868 putative glycosyltransferasechromosome CDS1963808 1131 + 0.666667
NA Tbd_1774 UDP-glucose 4-epimerasechromosome CDS1873642 1011 - 0.657765
NA Tbd_1775 GDP-L-fucose synthetasechromosome CDS1874762 984 - 0.643293
NA Tbd_0293 glycosyl transferase, group 1chromosome CDS312837 1221 + 0.692056