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2024-05-03 03:59:07

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 225

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSO_1636 conserved hypothetical proteinchromosome CDS1727901 582 + 0.530928
NA SSO_3814 hypothetical proteinchromosome CDS4007849 327 - 0.605505
NA SSO_2414 tail assembly proteinchromosome CDS2553136 744 - 0.59543
NA SSO_2308 putative racemasechromosome CDS2436045 1287 - 0.517483
NA SSO_2315 putative sugar transferasechromosome CDS2442906 969 + 0.498452
NA SSO_2974 putative amidasechromosome CDS3117372 1344 - 0.526042
NA SSO_1675 rhs core protein with extensionchromosome CDS1776639 3270 - 0.59633
NA SSO_1810 conserved hypothetical proteinchromosome CDS1906770 639 + 0.425665
NA SSO_1652 putative outer membrane porin proteinchromosome CDS1745537 1101 + 0.445958
NA SSO_2546 conserved hypothetical proteinchromosome CDS2683801 1044 - 0.550766
NA SSO_1765 tail assembly proteinchromosome CDS1870806 744 - 0.59543
NA SSO_0774 putative membrane proteinchromosome CDS817844 999 - 0.575576
NA SSO_2040 conserved hypothetical proteinchromosome CDS2138736 327 - 0.409786
NA SSO_2318 conserved hypothetical proteinchromosome CDS2446743 1653 + 0.510587
NA SSO_1435 conserved hypothetical proteinchromosome CDS1509796 759 + 0.494071
NA SSO_0257 rhs core protein with extensionchromosome CDS281027 4209 + 0.60038
NA SSO_2314 putative enzymechromosome CDS2441730 1173 + 0.515772
NA SSO_0517 rhs core protein with extensionchromosome CDS546074 3432 - 0.601981
NA SSO_3815 hypothetical proteinchromosome CDS4008166 885 - 0.648588
NA SSO_1673 rhs core protein with extensionchromosome CDS1771082 3804 - 0.633281
NA SSO_2086 putative enzyme of sugar metabolismchromosome CDS2180926 825 - 0.52
NA SSO_0652 hypothetical proteinchromosome CDS690923 759 + 0.650856
NA SSO_4107 hypothetical proteinchromosome CDS4342300 336 + 0.607143
NA SSO_1714 conserved hypothetical proteinchromosome CDS1817375 981 + 0.482161
NA SSO_3027 conserved hypothetical proteinchromosome CDS3183801 708 - 0.509887
NA SSO_P180 conserved hypothetical proteinpSS_046 CDS157516 1089 + 0.43067
NA SSO_2126 putative membrane proteinchromosome CDS2225906 1389 + 0.539237
NA SSO_0865 putative membrane proteinchromosome CDS918706 1143 + 0.530184
NA SSO_3016 putative lipoproteinchromosome CDS3168831 756 - 0.511905
NA SSO_1355 putative outer membrane proteinchromosome CDS1429578 582 + 0.505155
NA SSO_3189 putative kinasechromosome CDS3349568 1434 - 0.566248
NA SSO_1748 putative outer membrane proteinchromosome CDS1854954 1134 + 0.462963
NA SSO_0854 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS905021 1050 - 0.53619
NA SSO_2113 conserved hypothetical proteinchromosome CDS2205934 2199 - 0.533879
NA SSO_4106 hypothetical proteinchromosome CDS4341425 885 + 0.655367
NA SSO_4110 conserved hypothetical proteinchromosome CDS4344785 912 + 0.442982
NA SSO_1676 unknown protein associated with Rhs elementchromosome CDS1780131 471 - 0.653928
acrA SSO_0450 acridine efflux pumpchromosome CDS476620 1194 - 0.538526
acrE SSO_3406 AcrEchromosome CDS3586651 1158 + 0.523316
aefA SSO_0452 putative alpha helix proteinchromosome CDS478730 3363 + 0.519477
alr SSO_4233 alanine racemase 1chromosome CDS4490205 1080 + 0.553704
amiA SSO_2524 N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2661108 870 + 0.504598
amiB SSO_4354 N-acetylmuramoyl-l-alanine amidase IIchromosome CDS4622913 1338 + 0.553812
asmA SSO_2117 suppressor of ompF assembly mutantschromosome CDS2212191 1866 - 0.527867
blc SSO_4335 outer membrane lipoproteinchromosome CDS4603694 534 - 0.533708
caiT SSO_0048 probable carnitine transporterchromosome CDS49749 1515 - 0.516172
cfa SSO_1495 cyclopropane fatty acyl phospholipid synthasechromosome CDS1569416 1149 - 0.483029
cjrB SSO_2663 colicin Js-sensitive putative membrane proteinchromosome CDS2821089 552 + 0.458333
csgG SSO_1046 curli production assembly/transport component, 2nd curli operonchromosome CDS1128482 834 - 0.494005
cutF SSO_0206 copper homeostasis proteinchromosome CDS231628 711 + 0.516174
dacA SSO_0586 D-alanyl-D-alanine carboxypeptidase fraction Achromosome CDS624035 1212 - 0.494224
dacB SSO_3330 D-alanyl-D-alanine carboxypeptidase fraction Bchromosome CDS3508036 1434 + 0.527894
dacD SSO_2080 penicillin binding protein 6bchromosome CDS2174003 1173 - 0.494459
dadX SSO_1182 alanine racemase 2, catabolicchromosome CDS1262154 1071 + 0.579832
dapA SSO_2559 dihydrodipicolinate synthasechromosome CDS2700935 879 - 0.517634
ddg SSO_2469 putative heat shock proteinchromosome CDS2608736 987 + 0.508612
ddlA SSO_0356 D-alanine-D-alanine ligase Achromosome CDS382634 1095 - 0.513242
ddlB SSO_0100 D-alanine-D-alanine ligase Bchromosome CDS111576 921 + 0.515744
dgkA SSO_4222 diacylglycerol kinasechromosome CDS4481060 369 + 0.517615
dniR SSO_0225 transcriptional regulator for nitrite reductase (cytochrome c552)chromosome CDS249035 1359 - 0.520235
fepE SSO_0538 ferric enterobactin transportchromosome CDS577699 1134 + 0.443563
flgJ SSO_1101 flagellar biosynthesis proteinchromosome CDS1178663 942 + 0.544586
ftsI SSO_0092 septum formation; penicillin-binding protein 3; peptidoglycan synthetasechromosome CDS100750 1767 + 0.540464
ftsQ SSO_0101 cell division proteinchromosome CDS112498 831 + 0.534296
galE SSO_0711 UDP-galactose-4-epimerasechromosome CDS753057 1017 - 0.542773
galU SSO_1943 glucose-1-phosphate uridylyltransferasechromosome CDS2043164 909 - 0.469747
gidB SSO_3879 GldBchromosome CDS4088711 624 + 0.487179
glmS SSO_3890 L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS4098721 1830 + 0.537158
glmU SSO_3889 N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS4097189 1371 + 0.528082
gmd SSO_2106 GDP-D-mannose dehydratasechromosome CDS2199637 1122 - 0.545455
hemM SSO_1969 HemMchromosome CDS2071256 624 + 0.512821
hlpA SSO_0190 histone-like proteinchromosome CDS215403 486 + 0.502058
htrB SSO_1074 heat shock proteinchromosome CDS1156514 921 - 0.527687
icsA/virG SSO_P143 IcsA/VirGpSS_046 CDS126066 3309 + 0.40828
icsP/sopA SSO_P241 IcsP/SopApSS_046 CDS213078 948 + 0.376582
imp SSO_0062 organic solvent tolerancechromosome CDS64091 2355 - 0.515074
ipgF SSO_P097 IpgFpSS_046 CDS91571 459 + 0.35512
kdsA SSO_1963 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS2065738 855 - 0.516959
kdsB SSO_0920 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS986559 747 + 0.527443
kdtA SSO_3774 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome CDS3958065 1278 - 0.540689
lepA SSO_2693 GTP-binding elongation factorchromosome CDS2850391 1800 - 0.535556
lgt SSO_2985 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipidchromosome CDS3134778 876 - 0.52968
lnt SSO_0611 apolipoprotein N-acyltransferasechromosome CDS651448 1539 - 0.554906
lolA SSO_0892 periplasmic protein effects translocation of lipoproteins from inner membrane to outerchromosome CDS951262 615 + 0.507317
lpp SSO_1479 murein lipoproteinchromosome CDS1554314 237 - 0.506329
lpxA SSO_0193 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesischromosome CDS217481 789 + 0.531052
lpxB SSO_0194 tetraacyldisaccharide-1-Pchromosome CDS218269 1149 + 0.536989
lpxC SSO_0104 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS115900 918 + 0.510893
lpxD SSO_0191 UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS215892 1026 + 0.530214
lspA SSO_0032 prolipoprotein signal peptidasechromosome CDS32373 495 + 0.535354
lytB SSO_0034 control of stringent responsechromosome CDS33443 951 + 0.550999
mdoH SSO_1062 membrane glycosyltransferasechromosome CDS1142177 2544 + 0.550314
mepA SSO_2386 murein DD-endopeptidase, penicillin-insensitivechromosome CDS2517338 825 - 0.551515
mltA SSO_2970 membrane-bound lytic murein transglycosylase Achromosome CDS3115695 1098 - 0.528233
mltB SSO_2845 membrane-bound lytic murein transglycosylase Bchromosome CDS2985740 1086 - 0.550645
mltC SSO_3233 membrane-bound lytic murein transglycosylase Cchromosome CDS3409610 1083 - 0.508772
mltE SSO_1184 murein transglycosylase Echromosome CDS1266342 726 + 0.509642
mraY SSO_0095 phospho-N-acetylmuramoyl-pentapeptidetransferase ?chromosome CDS105345 1083 + 0.534626
mrcA SSO_3527 peptidoglycan synthetase; penicillin-binding protein 1Achromosome CDS3685494 2577 + 0.551416
mrcB SSO_0161 peptidoglycan synthetasechromosome CDS178927 2535 + 0.554241
mrdA SSO_0589 peptidoglycan synthetasechromosome CDS627599 1902 - 0.52734
mreC SSO_3391 rod shape-determining proteinchromosome CDS3571662 1104 - 0.559783
mreD SSO_3390 rod shape-determining proteinchromosome CDS3571174 489 - 0.509202
msbB SSO_1286 suppressor of htrB, heat shock proteinchromosome CDS1360223 972 + 0.509259
msbB2 SSO_P182 MsbB2pSS_046 CDS159624 945 + 0.433862
mscL SSO_3431 mechanosensitive channelchromosome CDS3610824 411 + 0.452555
mtgA SSO_3356 putative peptidoglycan enzymechromosome CDS3528155 729 - 0.515775
murA SSO_3337 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3514309 1260 - 0.533333
murB SSO_4145 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS4391188 1029 + 0.463557
murC SSO_0099 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligasechromosome CDS110108 1476 + 0.544715
murD SSO_0096 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS106430 1317 + 0.552771
murE SSO_0093 meso-diaminopimelate-adding enzymechromosome CDS102503 1494 + 0.565596
murF SSO_0094 D-alanine:D-alanine-adding enzymechromosome CDS103993 1359 + 0.551141
murG SSO_0098 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS108987 1068 + 0.561798
murI SSO_4140 glutamate racemasechromosome CDS4384801 870 + 0.512644
nanA SSO_3366 N-acetylneuraminate lyasechromosome CDS3544421 894 - 0.520134
nlpB SSO_2558 lipoprotein-34chromosome CDS2699884 1038 - 0.552987
nlpC SSO_1450 lipoproteinchromosome CDS1523925 465 + 0.490323
nlpD SSO_2890 lipoproteinchromosome CDS3031258 1140 - 0.522807
nmpC SSO_2440 outer membrane porin protein C precursorchromosome CDS2574305 1083 + 0.440443
ompA SSO_0961 outer membrane protein 3a (II*;G;d)chromosome CDS1037106 1041 - 0.537944
ompC SSO_2273 outer membrane protein 1b (Ib;c)chromosome CDS2385840 1107 - 0.505872
ompF SSO_0932 outer membrane protein 1a (Ia;b;F)chromosome CDS1003039 1089 - 0.478421
ompX SSO_0794 outer membrane protein Xchromosome CDS840614 516 + 0.515504
pal SSO_0693 peptidoglycan-associated lipoproteinchromosome CDS739466 522 + 0.51341
pbpC SSO_2601 putative peptidoglycan enzymechromosome CDS2748555 2313 - 0.570687
pbpG SSO_2191 penicillin-binding protein 7chromosome CDS2296871 942 - 0.502123
phoE SSO_0283 outer membrane pore protein E (E,Ic,NmpAB)chromosome CDS311023 1056 - 0.447917
pldA SSO_3995 outer membrane phospholipase Achromosome CDS4218955 870 + 0.506897
prc SSO_1331 carboxy-terminal proteasechromosome CDS1404832 2049 + 0.507077
rfaC SSO_3784 heptosyl transferase Ichromosome CDS3968958 972 - 0.516461
rfaF SSO_3785 ADP-heptose--lps heptosyltransferase IIchromosome CDS3969933 1047 - 0.537727
rfe SSO_3956 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS4178606 1104 + 0.493659
rffG SSO_3960 dTDP-glucose 4,6-dehydratasechromosome CDS4183212 1068 + 0.536517
rffH SSO_3961 glucose-1-phosphate thymidylyltransferasechromosome CDS4184298 882 + 0.55102
rhsA SSO_0655 rhsA protein in rhs elementchromosome CDS694244 3387 + 0.590788
rhsB SSO_3813 rhsB protein in rhs elementchromosome CDS4004876 2949 - 0.569346
rlpA SSO_0587 minor lipoproteinchromosome CDS625385 1089 - 0.576676
rlpB SSO_0595 minor lipoproteinchromosome CDS632888 582 - 0.522337
sigA SSO_3223 serine proteasechromosome CDS3389961 3858 - 0.417574
slp SSO_3580 outer membrane protein induced after carbon starvationchromosome CDS3750708 600 - 0.446667
slt SSO_4542 soluble lytic murein transglycosylasechromosome CDS4814372 1965 + 0.541476
slyB SSO_1515 putative outer membrane proteinchromosome CDS1591571 468 - 0.512821
spr SSO_2231 putative lipoproteinchromosome CDS2342776 567 + 0.465608
tolA SSO_0691 membrane spanning proteinchromosome CDS736774 1233 + 0.528792
tolC SSO_3173 TolCchromosome CDS3331618 1488 + 0.514113
tonB SSO_1914 TonBchromosome CDS2007905 720 - 0.55
tsx SSO_0388 nucleoside channelchromosome CDS416223 885 - 0.502825
ugd SSO_2099 UDP-glucose 6-dehydrogenasechromosome CDS2191067 1167 - 0.434447
vacJ SSO_2403 lipoprotein precursorchromosome CDS2538329 756 - 0.521164
waaD SSO_3786 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS3970989 933 - 0.513398
waaG SSO_3776 LPS alpha1,3-glucosyltransferasechromosome CDS3960810 1125 + 0.482667
waaI SSO_3778 UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferasechromosome CDS3962740 1017 + 0.381514
waaJ SSO_3779 lipopolysaccharide 1,2-glucosyltransferasechromosome CDS3963773 996 + 0.35743
waaL SSO_3783 lipid A-core, surface polymer ligasechromosome CDS3967635 1254 + 0.330941
waaQ SSO_3775 lipopolysaccharide core biosynthesis proteinchromosome CDS3959755 1059 + 0.468366
waaV SSO_3782 putative beta1,3-glucosyltransferasechromosome CDS3966606 984 + 0.324187
waaW SSO_3781 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferasechromosome CDS3965496 1026 + 0.368421
wbgT SSO_P224 putative UDP-glucose 6-dehydrogenasepSS_046 CDS194554 1314 + 0.360731
wbgU SSO_P225 putative UDP-glucose 4-epimerasepSS_046 CDS195948 1038 + 0.34104
wbgW SSO_P230 putative glycosyltransferasepSS_046 CDS201993 987 + 0.265451
wbgX SSO_P231 putative glycosyltransferasepSS_046 CDS202976 1155 + 0.375758
wbgY SSO_P232 putative glycosyltransferasepSS_046 CDS204147 591 + 0.351946
wbgZ SSO_P233 putative epimerase/dehydratasepSS_046 CDS204752 1920 + 0.442187
wcaA SSO_2112 putative regulatorchromosome CDS2205002 840 - 0.504762
wcaC SSO_2110 putative glycosyl transferasechromosome CDS2203297 1218 - 0.537767
wcaE SSO_2108 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2201348 747 - 0.453815
wcaG SSO_2105 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2198669 966 - 0.563147
wcaI SSO_2103 putative colanic biosynthesis glycosyl transferasechromosome CDS2196967 1224 - 0.555556
wecB SSO_3958 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS4180781 1173 + 0.522592
wecC SSO_3959 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS4181950 1263 + 0.539192
wecE SSO_3963 putative regulatorchromosome CDS4185836 1131 + 0.546419
wecG SSO_3967 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS4190646 741 + 0.534413
wza SSO_2115 putative polysaccharide export proteinchromosome CDS2208548 1140 - 0.532456
wzy SSO_P227 putative polysaccharide polymerasepSS_046 CDS198423 1173 + 0.29838
wzz SSO_P223 O antigen chain length determinant proteinpSS_046 CDS193478 1041 + 0.369837
wzzB SSO_2098 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2189944 1014 - 0.457594
wzzE SSO_3957 putative transport proteinchromosome CDS4179718 1050 + 0.524762
yabC SSO_0090 putative apolipoproteinchromosome CDS99431 942 + 0.552017
yaeF SSO_0207 conserved hypothetical proteinchromosome CDS232493 834 - 0.489209
yaeL SSO_0188 conserved hypothetical proteinchromosome CDS211467 1353 + 0.507761
yaeT SSO_0189 conserved hypothetical proteinchromosome CDS212849 2433 + 0.504727
yafL SSO_0269 putative lipoproteinchromosome CDS296859 750 + 0.536
yajG SSO_0417 putative polymerase/proteinasechromosome CDS442386 681 - 0.50514
ybdG SSO_0528 putative transportchromosome CDS563720 1248 - 0.477564
ybiO SSO_0788 putative transport proteinchromosome CDS833563 2226 - 0.534142
ybjT SSO_0855 putative dTDP-glucose enzymechromosome CDS906133 1431 - 0.548567
ycaH SSO_0917 putative enzymechromosome CDS984073 987 + 0.548126
yccC SSO_0988 conserved hypothetical proteinchromosome CDS1061673 2181 - 0.505731
yccZ SSO_0990 putative function in exopolysaccharide productionchromosome CDS1064307 1140 - 0.509649
ycfN SSO_1126 putative beta-glucosidasechromosome CDS1204551 825 + 0.530909
ycfU SSO_1136 conserved hypothetical proteinchromosome CDS1216737 1200 + 0.545
ycfW SSO_1138 putative kinasechromosome CDS1218630 1245 + 0.508434
ycgR SSO_1186 conserved hypothetical proteinchromosome CDS1267069 735 - 0.506122
yciD SSO_1910 putative outer membrane proteinchromosome CDS2005055 639 - 0.500782
ycjG SSO_1813 putative muconate cycloisomerase Ichromosome CDS1909255 909 - 0.539054
ydhO SSO_1501 putative lipoproteinchromosome CDS1576711 816 - 0.477941
yeaF SSO_1380 conserved hypothetical proteinchromosome CDS1454639 747 + 0.524766
yeaV SSO_1360 putative transport proteinchromosome CDS1435477 1446 - 0.508299
yebA SSO_1285 conserved hypothetical proteinchromosome CDS1358844 1260 + 0.52619
yegX SSO_2150 conserved hypothetical proteinchromosome CDS2254530 828 - 0.475845
yehZ SSO_2188 putative transport system permease proteinchromosome CDS2291455 918 - 0.537037
yfhD SSO_2641 putative periplasmic binding transport proteinchromosome CDS2799913 1419 + 0.504581
yfiB SSO_2762 putative outer membrane proteinchromosome CDS2915962 483 + 0.507246
ygcX SSO_2944 putative glucarate dehydratasechromosome CDS3087772 1341 - 0.530201
ygcY SSO_2945 putative glucarate dehydratasechromosome CDS3089133 1341 - 0.538404
yggB SSO_3076 putative transport proteinchromosome CDS3239918 861 - 0.494774
yhfN SSO_3503 putative transport proteinchromosome CDS3664023 1044 + 0.543103
yhiI SSO_3723 putative membrane proteinchromosome CDS3900936 1068 - 0.586142
yhiU SSO_3573 putative membrane proteinchromosome CDS3744846 1158 - 0.545769
yhjG SSO_3867 conserved hypothetical proteinchromosome CDS4072707 2076 + 0.529865
yiaD SSO_3836 putative outer membrane proteinchromosome CDS4028796 660 - 0.584848
yjcP SSO_4261 putative enzymechromosome CDS4524996 1467 - 0.561691
yjeP SSO_4344 putative periplasmic binding proteinchromosome CDS4612774 3324 - 0.553851
yjfG SSO_4414 putative ligasechromosome CDS4682285 1374 + 0.55313
ylcB SSO_0523 putative resistance proteinchromosome CDS556042 1383 + 0.513377
ylcD SSO_0525 putative resistance proteinchromosome CDS557796 1224 + 0.555556
yncA SSO_1688 putative resistance proteinchromosome CDS1793983 519 + 0.526012
yohG SSO_2195 putative channel/filament proteinschromosome CDS2300256 1197 - 0.553049
yohK SSO_2198 putative seritonin transporterchromosome CDS2303953 696 + 0.54023
yqhH SSO_3157 conserved hypothetical proteinchromosome CDS3314954 258 + 0.472868
yraR SSO_3298 conserved hypothetical proteinchromosome CDS3475024 681 - 0.552129
ytfB SSO_4391 conserved hypothetical proteinchromosome CDS4655096 675 - 0.551111
ytfG SSO_4397 putative oxidoreductasechromosome CDS4660182 861 - 0.538908
ytfM SSO_4405 conserved hypothetical proteinchromosome CDS4669390 1734 + 0.530565