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2024-05-05 21:16:21

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 210

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0047 carboxyl-terminal protease, putativechromosome CDS53199 1209 - 0.462366
SO0061 lipoprotein, NLP/P60 familychromosome CDS68407 465 + 0.464516
SO0067 penicillin-binding protein 1C, putativechromosome CDS78057 2283 + 0.505037
SO0121 conserved hypothetical proteinchromosome CDS130527 1179 + 0.497031
SO0205 hypothetical proteinchromosome CDS213168 393 + 0.475827
SO0306 hypothetical proteinchromosome CDS311176 1512 - 0.475529
SO0312 outer membrane porin, putativechromosome CDS317544 1155 - 0.485714
SO0363 hypothetical proteinchromosome CDS373652 882 + 0.489796
SO0428 conserved hypothetical proteinchromosome CDS449534 2211 + 0.443238
SO0518 outer membrane efflux family protein, putativechromosome CDS539029 1359 + 0.502575
SO0519 cation efflux protein, putativechromosome CDS540393 1302 + 0.519201
SO0588 transporter, putativechromosome CDS613120 3204 - 0.454432
SO0820 HlyD family secretion proteinchromosome CDS834972 1218 + 0.517241
SO0822 outer membrane efflux family proteinchromosome CDS838167 1419 + 0.523608
SO0934 conserved hypothetical proteinchromosome CDS965457 738 + 0.448509
SO0946 conserved hypothetical proteinchromosome CDS980436 1128 - 0.469858
SO0961 conserved hypothetical proteinchromosome CDS996496 453 + 0.467991
SO1048 membrane protein, putativechromosome CDS1085613 735 + 0.488435
SO1165 rare lipoprotein Achromosome CDS1207687 852 - 0.456573
SO1166 membrane-bound lytic transglycosylase, putativechromosome CDS1208522 1065 - 0.443192
SO1173 rare lipoprotein Bchromosome CDS1215265 495 - 0.488889
SO1215 outer membrane protein OmpK, putativechromosome CDS1262531 852 + 0.411972
SO1295 major outer membrane lipoprotein, putativechromosome CDS1345223 267 - 0.445693
SO1314 peptidase, M23/M37 familychromosome CDS1369676 1449 - 0.465148
SO1420 outer membrane porin, putativechromosome CDS1478439 1038 + 0.408478
SO1447 retinol acyltransferase domain proteinchromosome CDS1508397 723 - 0.504841
SO1557 outer membrane porin, putativechromosome CDS1633333 966 + 0.42236
SO1605 lipoprotein, putativechromosome CDS1688813 576 + 0.491319
SO1636 membrane-associated zinc metalloprotease, putativechromosome CDS1717535 1371 + 0.47046
SO1637 bacterial surface antigenchromosome CDS1718937 2481 + 0.455865
SO1662 conserved hypothetical proteinchromosome CDS1750121 408 - 0.419118
SO1673 outer membrane protein OmpW, putativechromosome CDS1759718 645 + 0.413953
SO1705 conserved hypothetical proteinchromosome CDS1793878 927 + 0.545847
SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family proteinchromosome CDS1825758 1164 + 0.497423
SO1821 outer membrane porin, putativechromosome CDS1912701 1197 + 0.433584
SO1881 HlyD family-related proteinchromosome CDS1977241 1083 + 0.476454
SO1925 HlyD family secretion proteinchromosome CDS2027826 1065 - 0.443192
SO1947 hypothetical proteinchromosome CDS2049972 345 - 0.481159
SO1994 membrane-bound lytic transglycolase-related proteinchromosome CDS2093972 1302 + 0.489247
SO2040 soluble lytic murein transglycosylase, putativechromosome CDS2136430 1926 - 0.464174
SO2077 acyltransferase domain proteinchromosome CDS2173796 378 - 0.449735
SO2088 lipid A biosynthesis acyltransferase, putativechromosome CDS2184640 939 + 0.456869
SO2114 conserved hypothetical proteinchromosome CDS2215857 1857 - 0.465805
SO2180 peptidase, M23/M37 familychromosome CDS2291918 936 + 0.508547
SO2194 OmpA family proteinchromosome CDS2306555 810 + 0.516049
SO2196 LPXTG-site transpeptidase family proteinchromosome CDS2309797 687 + 0.483261
SO2259 lipoprotein releasing system transmembrane protein LolC, putativechromosome CDS2374163 1251 + 0.495604
SO2467 adhesion-related proteinchromosome CDS2588101 375 - 0.48
SO2472 D-alanyl-D-alanine carboxypeptidase-related proteinchromosome CDS2594218 759 + 0.516469
SO2476 polysaccharide biosynthesis proteinchromosome CDS2596996 1188 + 0.459596
SO2554 conserved hypothetical proteinchromosome CDS2686023 357 + 0.484594
SO2564 transglycosylase, Slt familychromosome CDS2693552 1548 + 0.446382
SO2601 carboxyl-terminal proteasechromosome CDS2736274 2049 - 0.454368
SO2622 conserved hypothetical proteinchromosome CDS2758935 471 - 0.471338
SO2712 hypothetical proteinchromosome CDS2830243 1140 - 0.484211
SO2773 hypothetical proteinchromosome CDS2895784 369 - 0.457995
SO2842 peptidase, M23/M37 familychromosome CDS2959098 1305 - 0.42682
SO2848 hypothetical proteinchromosome CDS2967086 396 - 0.444444
SO2861 conserved hypothetical proteinchromosome CDS2985205 852 - 0.483568
SO2943 conserved domain proteinchromosome CDS3081823 258 - 0.465116
SO2948 prophage LambdaSo, tail assembly protein K, putativechromosome CDS3085846 714 - 0.505602
SO2981 hypothetical proteinchromosome CDS3109165 585 - 0.464957
SO3060 outer membrane porin, putativechromosome CDS3174321 1170 - 0.466667
SO3102 AcrA/AcrE family proteinchromosome CDS3227970 1014 + 0.488166
SO3161 glucose-1-phosphate thymidylyltransferase-related proteinchromosome CDS3298073 195 - 0.374359
SO3163 lipoproteinchromosome CDS3300032 453 + 0.439294
SO3167 dTDP-glucose 4,6-dehydratasechromosome CDS3302662 1032 - 0.455426
SO3171 polysaccharide biosynthesis proteinchromosome CDS3307620 1941 - 0.442555
SO3172 galactosyl transferasechromosome CDS3309691 558 - 0.387097
SO3173 UDP-galactose 4-epimerase, putativechromosome CDS3310251 930 - 0.469892
SO3174 glycosyl transferase, group 1 family proteinchromosome CDS3311216 1134 - 0.38448
SO3176 glycosyl transferase, group 1 family proteinchromosome CDS3314278 1122 - 0.365419
SO3180 glycosyl transferase, group 2 family proteinchromosome CDS3318973 897 - 0.317726
SO3183 perosamine synthetase-related proteinchromosome CDS3321791 951 - 0.309148
SO3185 polysaccharide biosynthesis proteinchromosome CDS3323470 1077 - 0.349118
SO3189 polysaccharide biosynthesis proteinchromosome CDS3327042 1023 - 0.376344
SO3190 polysaccharide biosynthesis proteinchromosome CDS3328151 1281 - 0.416862
SO3191 chain length determinant proteinchromosome CDS3329608 990 - 0.417172
SO3193 polysaccharide biosynthesis proteinchromosome CDS3331303 2766 - 0.441432
SO3197 vacJ lipoprotein, putativechromosome CDS3338754 786 - 0.431298
SO3261 polysaccharide biosynthesis related-proteinchromosome CDS3396928 873 + 0.436426
SO3269 cytidylyltransferase domain proteinchromosome CDS3406993 1725 + 0.431304
SO3270 polysaccharide biosynthesis proteinchromosome CDS3408733 1146 - 0.4363
SO3271 polysaccharide biosynthesis proteinchromosome CDS3409875 996 - 0.456827
SO3278 conserved hypothetical proteinchromosome CDS3417827 1125 + 0.480889
SO3288 transglycosylase, Slt familychromosome CDS3433162 1374 + 0.467249
SO3339 OmpA family proteinchromosome CDS3486976 591 + 0.409475
SO3340 conserved hypothetical proteinchromosome CDS3487598 828 + 0.422705
SO3387 hypothetical proteinchromosome CDS3525798 510 + 0.433333
SO3411 protease, putativechromosome CDS3547932 3285 - 0.482496
SO3483 HlyD family secretion proteinchromosome CDS3629924 1110 + 0.476577
SO3506 SIS domain proteinchromosome CDS3657713 999 - 0.487487
SO3545 OmpA family proteinchromosome CDS3701745 1113 + 0.443845
SO3592 conserved hypothetical proteinchromosome CDS3755361 915 + 0.424044
SO3634 nucleotidyltransferase family proteinchromosome CDS3791930 681 - 0.493392
SO3685 curli production assembly/transport component CsgG, putativechromosome CDS3835495 807 - 0.478315
SO3694 conserved hypothetical proteinchromosome CDS3844363 1260 - 0.492857
SO3731 hypothetical proteinchromosome CDS3874192 1548 + 0.428295
SO3810 OmpA-like transmembrane domain proteinchromosome CDS3963112 564 - 0.439716
SO3811 lipoprotein, putativechromosome CDS3963812 567 + 0.440917
SO3896 outer membrane porin, putativechromosome CDS4042055 1110 + 0.414414
SO3931 conserved hypothetical proteinchromosome CDS4076330 744 + 0.395161
SO3969 OmpA family proteinchromosome CDS4108149 687 - 0.509461
SO4015 conserved hypothetical proteinchromosome CDS4160082 1308 - 0.4763
SO4017 transglycosylase, Slt familychromosome CDS4163355 1434 + 0.466527
SO4043 TonB domain proteinchromosome CDS4196803 1110 + 0.454054
SO4089 HlyD family secretion proteinchromosome CDS4243248 975 - 0.527179
SO4090 outer membrane efflux proteinchromosome CDS4244212 1422 - 0.49789
SO4131 conserved hypothetical proteinchromosome CDS4288941 753 + 0.440903
SO4148 HlyD family secretion proteinchromosome CDS4308263 1326 + 0.441176
SO4174 NAD dependent epimerase/dehydratase family proteinchromosome CDS4346500 921 - 0.51683
SO4178 conserved hypothetical proteinchromosome CDS4349988 1056 - 0.487689
SO4179 glycosyl transferase, group 2 family proteinchromosome CDS4351043 1212 - 0.469472
SO4212 peptidase, M23/M37 familychromosome CDS4385863 900 - 0.466667
SO4227 conserved hypothetical protein TIGR00006chromosome CDS4402796 942 - 0.474522
SO4319 HlyD family secretion proteinchromosome CDS4505665 1455 + 0.446048
SO4321 OmpA family proteinchromosome CDS4508558 606 + 0.448845
SO4327 HlyD family secretion domain proteinchromosome CDS4518424 1119 + 0.462913
SO4420 peptidase, M23/M37 familychromosome CDS4612038 513 + 0.45614
SO4473 outer membrane protein, putativechromosome CDS4662161 567 - 0.416226
SO4505 conserved hypothetical proteinchromosome CDS4696908 657 + 0.487062
SO4564 TonB2 protein, putativechromosome CDS4760828 612 + 0.477124
SO4597 heavy metal efflux system protein, putativechromosome CDS4788361 1419 + 0.479211
SO4628 sulfatasechromosome CDS4822919 1983 - 0.480585
SO4660 transglycosylase SLT domain proteinchromosome CDS4859473 720 - 0.480556
SO4678 heptosyl transferase, glycosyltransferase family 9 proteinchromosome CDS4876548 1044 + 0.510536
SO4679 glycosyl transferase, group 1 family proteinchromosome CDS4877644 1086 + 0.467772
SO4680 conserved hypothetical proteinchromosome CDS4878749 1077 + 0.481894
SO4681 glycosyl transferase, group 1 family proteinchromosome CDS4879861 1179 - 0.410517
SO4682 glycosyl transferase, group 1 family proteinchromosome CDS4881325 1071 - 0.47619
SO4686 NAD dependent epimerase/dehydratase family proteinchromosome CDS4885039 1008 - 0.489087
SO4688 glycosyl transferase, group 2 family proteinchromosome CDS4887469 732 + 0.506831
SO4690 conserved hypothetical proteinchromosome CDS4889105 1725 + 0.496812
SO4693 multidrug resistance protein, AcrA/AcrE familychromosome CDS4894620 1149 - 0.490862
SOA0050 toxin secretion, membrane fusion proteinmegaplasmid CDS41113 1248 - 0.394231
SOA0154 heavy metal efflux protein, putativemegaplasmid CDS143635 1551 - 0.489362
SOA0173 hypothetical proteinmegaplasmid CDS160979 267 - 0.41573
aggA agglutination proteinchromosome CDS4507146 1416 + 0.457627
alr alanine racemase, biosyntheticchromosome CDS4062285 1077 - 0.489322
amiB N-acetylmuramoyl-L-alanine amidasechromosome CDS625445 1392 + 0.454023
asmA asmA proteinchromosome CDS2696117 1821 - 0.427238
blc lipoprotein Blcchromosome CDS1778846 534 - 0.455056
cfa cyclopropane-fatty-acyl-phospholipid synthasechromosome CDS3517406 1257 - 0.463803
cutE apolipoprotein N-acyltransferasechromosome CDS1219581 1557 - 0.487476
dacA-1 D-alanyl-D-alanine carboxypeptidasechromosome CDS1206370 1173 - 0.452685
dacB penicillin-binding protein 4chromosome CDS2497388 1524 + 0.454724
dapA dihydrodipicolinate synthasechromosome CDS1974639 885 + 0.483616
ddlA D-alanine--D-alanine ligasechromosome CDS2331687 1011 - 0.450049
dgkA diacylglycerol kinasechromosome CDS2317494 405 - 0.464198
flgJ flagellar protein FlgJchromosome CDS3380959 1155 - 0.471861
ftsI peptidoglycan synthetase FtsIchromosome CDS4400705 1752 - 0.502283
ftsQ cell division protein FtsQchromosome CDS4390781 789 - 0.468948
galE UDP-glucose 4-epimerasechromosome CDS1751213 1014 - 0.472387
galU UTP-glucose-1-phosphate uridylyltransferasechromosome CDS1752226 909 - 0.464246
gidB glucose-inhibited division protein Bchromosome CDS4967069 621 - 0.431562
glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)chromosome CDS4951368 1830 - 0.497268
glmU UDP-N-acetylglucosamine pyrophosphorylasechromosome CDS4956626 1365 - 0.477656
htrB lipid A biosynthesis lauroyl acyltransferasechromosome CDS3891551 927 + 0.487594
imp organic solvent tolerance proteinchromosome CDS3793820 2298 + 0.449956
kdsA 2-dehydro-3-deoxyphosphooctonate aldolasechromosome CDS3977374 849 - 0.444052
kdsB 3-deoxy-D-manno-octulosonatecytidylyltransferasechromosome CDS2599356 738 + 0.479675
kdtA 3-deoxy-D-manno-octulosonic-acid (KDO) transferasechromosome CDS4874417 1275 + 0.533333
lepA GTP-binding protein LepAchromosome CDS1402038 1791 + 0.457286
lgt prolipoprotein diacylglyceryl transferasechromosome CDS1392260 807 + 0.459727
lolA outer membrane lipoprotein carrier protein LolAchromosome CDS2419898 621 + 0.431562
lolB outer membrane lipoprotein LolBchromosome CDS3985011 645 + 0.494574
lolE lipoprotein releasing system transmembrane protein LolEchromosome CDS2372143 1233 + 0.501217
lpxA acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferasechromosome CDS1723502 771 + 0.486381
lpxB lipid A disaccharide synthasechromosome CDS1724404 1158 + 0.489637
lpxC UDP-3-0-acyl N-acetylglucosamine deacetylasechromosome CDS4387250 921 - 0.465798
lpxD UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferasechromosome CDS1721984 1026 + 0.484405
lpxK tetraacyldisaccharide 4'-kinasechromosome CDS2922559 1008 - 0.499008
lspA lipoprotein signal peptidasechromosome CDS3685286 513 - 0.409357
lytB penicillin tolerance protein LytBchromosome CDS3683909 957 - 0.45768
mdoH periplasmic glucans biosynthesis protein MdoHchromosome CDS2205808 2184 + 0.491758
mexE RND multidrug efflux membrane fusion protein MexEchromosome CDS3643118 1431 - 0.480783
mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS3959211 1398 - 0.496423
mraY phospho-N-acetylmuramoyl-pentapeptide-transferasechromosome CDS4396765 1083 - 0.476454
mrcA penicillin-binding protein 1Achromosome CDS286053 2520 - 0.481349
mrcB penicillin-binding protein 1Bchromosome CDS660661 2307 + 0.515388
mrdA penicillin-binding protein 2chromosome CDS1210703 1857 - 0.480883
mreC rod shape-determining protein MreCchromosome CDS4255016 1068 - 0.514981
mreD rod shape-determining protein MreDchromosome CDS4254528 489 - 0.464213
mscL large conductance mechanosensitive channel proteinchromosome CDS545546 411 - 0.46472
mtgA monofunctional biosynthetic peptidoglycan transglycosylasechromosome CDS3878719 777 - 0.456885
mtrB outer membrane protein precursor MtrBchromosome CDS1856169 2094 - 0.463228
murA UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS4093440 1260 - 0.504762
murB UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS223639 1026 + 0.446394
murC UDP-N-acetylmuramate--alanine ligasechromosome CDS4391681 1467 - 0.496933
murD UDP-N-acetylmuramoylalanine--D-glutamateligasechromosome CDS4395439 1320 - 0.506818
murE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligasechromosome CDS4399230 1476 - 0.518293
murF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligasechromosome CDS4397848 1383 - 0.491685
murG UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS4393150 1089 - 0.517906
murI glutamate racemasechromosome CDS214813 822 + 0.457421
nlpB lipoprotein-34 NlpBchromosome CDS1975527 1098 + 0.454463
nlpD lipoprotein NlpDchromosome CDS3578320 897 - 0.410256
ompA outer membrane protein Amegaplasmid CDS99408 1029 + 0.467444
ompH outer membrane protein OmpHchromosome CDS1721474 507 + 0.424063
pal peptidoglycan-associated lipoproteinchromosome CDS2868611 534 - 0.449438
pbpG D-alanyl-D-alanine endopeptidasechromosome CDS1029978 966 + 0.459627
rfaE ADP-heptose synthasechromosome CDS3890018 1431 - 0.502446
rfbA glucose-1-phosphate-thymidylyltransferasechromosome CDS3324543 915 - 0.382514
rfbB dTDP-glucose 4,6-dehydratasechromosome CDS3325912 1128 - 0.430851
rfbC dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS3297547 540 - 0.472222
rfbD dTDP-4-dehydrorhamnose reductasechromosome CDS1741411 987 + 0.510638
tolA tolA proteinchromosome CDS2870529 1038 - 0.468208
tolC outer membrane protein TolCchromosome CDS4051556 1308 + 0.447248
tonB1 TonB1 proteinchromosome CDS3823865 825 + 0.473939
tonB2 TonB2 proteinchromosome CDS1920583 624 + 0.491987
ugd UDP-glucose 6-dehydrogenasechromosome CDS4886071 1164 - 0.456186