Gene list
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COG category: Cell wall/membrane biogenesis
Organism: Shigella boydii Sb227, Sb227
Number of genes found: 212
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| Shigella boydii Sb227, Sb227 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SBO_2294 | conserved hypothetical protein | RecName: Full=Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; EC=2.4.2.43; AltName: Full=4-amino-4-deoxy-L-arabinose lipid A transferase; AltName: Full=Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; AltName: Full=Undecaprenyl phosphate-alpha-L-Ara4N transferase; | chromosome | CDS | 2283078 | 1653 | + | 0.510587 |
| NA | SBO_1626 | tail assembly protein | SubName: Full=Tail assembly protein; | chromosome | CDS | 1615242 | 555 | - | 0.589189 |
| NA | SBO_0842 | putative enzyme of sugar metabolism | SubName: Full=Putative enzyme of sugar metabolism; | chromosome | CDS | 857853 | 825 | - | 0.512727 |
| NA | SBO_1689 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1675988 | 1134 | + | 0.464727 |
| NA | SBO_3121 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 3125956 | 780 | + | 0.502564 |
| NA | SBO_2482 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2471784 | 1044 | - | 0.552682 |
| NA | SBO_2290 | putative enzyme | RecName: Full=UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; EC=2.6.1.87; AltName: Full=UDP-(beta-L-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase; Short=UDP-Ara4O aminotransferase; AltName: Full=UDP-4-amino-4-deoxy-L-arabinose aminotransferase; | chromosome | CDS | 2278065 | 1173 | + | 0.515772 |
| NA | SBO_2291 | putative sugar transferase | RecName: Full=Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; EC=2.4.2.53; AltName: Full=Undecaprenyl-phosphate Ara4FN transferase; Short=Ara4FN transferase; | chromosome | CDS | 2279241 | 969 | + | 0.49742 |
| NA | SBO_1282 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1271056 | 582 | + | 0.537801 |
| NA | SBO_1659 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1641845 | 765 | + | 0.48366 |
| NA | SBO_0900 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 924238 | 1395 | + | 0.536918 |
| NA | SBO_2908 | putative kinase | RecName: Full=Bifunctional protein HldE; Includes: RecName: Full=D-beta-D-heptose 7-phosphate kinase; EC=2.7.1.167; AltName: Full=D-beta-D-heptose 7-phosphotransferase; AltName: Full=D-glycero-beta-D-manno-heptose-7-phosphate kinase; Includes: RecName: Full=D-beta-D-heptose 1-phosphate adenylyltransferase; EC=2.7.7.70; AltName: Full=D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase; | chromosome | CDS | 2909966 | 1434 | - | 0.564854 |
| NA | SBO_0856 | putative nucleotide sugar epimerase | SubName: Full=Putative nucleotide sugar epimerase; | chromosome | CDS | 870137 | 438 | + | 0.39726 |
| NA | SBO_1585 | putative outer membrane porin protein | SubName: Full=Putative outer membrane porin protein; | chromosome | CDS | 1580524 | 291 | + | 0.415808 |
| NA | SBO_1041 | putative outer membrane porin protein C precurser | SubName: Full=Putative outer membrane porin protein C precurser; | chromosome | CDS | 1057479 | 498 | - | 0.411647 |
| NA | SBO_1732 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1713240 | 1032 | + | 0.436047 |
| NA | SBO_0811 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 822012 | 1143 | + | 0.524934 |
| NA | SBO_1921 | putative membrane protein, energy transducer | SubName: Full=Putative membrane protein, energy transducer; | chromosome | CDS | 1901423 | 333 | - | 0.432432 |
| NA | SBO_1368 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1345869 | 759 | + | 0.491436 |
| NA | SBO_1899 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1880654 | 372 | - | 0.478495 |
| NA | SBO_0801 | putative nucleotide di-P-sugar epimerase or dehydratase | SubName: Full=Putative nucleotide di-P-sugar epimerase or dehydratase; | chromosome | CDS | 808545 | 1050 | - | 0.538095 |
| NA | SBO_2703 | putative isomerase | SubName: Full=Putative isomerase; | chromosome | CDS | 2706143 | 477 | - | 0.412998 |
| NA | SBO_0640 | putative transglycosylase | SubName: Full=Putative transglycosylase; | chromosome | CDS | 652860 | 999 | + | 0.551552 |
| NA | SBO_1743 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1722587 | 591 | + | 0.42132 |
| NA | SBO_0399 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 417077 | 303 | + | 0.636964 |
| NA | SBO_1600 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 1592713 | 519 | + | 0.527938 |
| NA | SBO_0683 | putative membrane protein | RecName: Full=UPF0194 membrane protein YbhG; Flags: Precursor; | chromosome | CDS | 695763 | 999 | - | 0.572573 |
| NA | SBO_0400 | putative protein in rhs element | SubName: Full=Uncharacterized protein; | chromosome | CDS | 417237 | 405 | + | 0.632099 |
| NA | SBO_3108 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3109319 | 708 | + | 0.504237 |
| NA | SBO_3954 | putative protein in rhs element | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3980961 | 2784 | + | 0.614583 |
| NA | SBO_1200 | tail assembly protein | SubName: Full=Tail assembly protein; | chromosome | CDS | 1196089 | 819 | - | 0.571429 |
| NA | SBO_0401 | putative protein in rhs element | SubName: Full=Uncharacterized protein; | chromosome | CDS | 417819 | 3018 | + | 0.624254 |
| NA | SBO_1569 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1563832 | 582 | + | 0.530928 |
| NA | SBO_1590 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1583209 | 234 | - | 0.547009 |
| NA | SBO_2047 | putative racemase | RecName: Full=L-rhamnonate dehydratase; Short=RhamD; EC=4.2.1.90; | chromosome | CDS | 2018392 | 1218 | + | 0.521346 |
| NA | SBO_2707 | putative amidase | SubName: Full=Putative amidase; | chromosome | CDS | 2710491 | 1344 | - | 0.526786 |
| NA | SBO_1900 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1881107 | 1137 | - | 0.469657 |
| acrA | SBO_0363 | acridine efflux pump | SubName: Full=Acridine efflux pump; | chromosome | CDS | 377737 | 1194 | - | 0.538526 |
| acrE | SBO_3259 | AcrE | SubName: Full=AcrE; | chromosome | CDS | 3262097 | 1119 | + | 0.522788 |
| aefA | SBO_0365 | putative alpha helix protein | SubName: Full=Putative alpha helix protein; | chromosome | CDS | 379847 | 3363 | + | 0.518287 |
| alr | SBO_4064 | alanine racemase 1 | RecName: Full=Alanine racemase; EC=5.1.1.1; | chromosome | CDS | 4106799 | 1080 | - | 0.556481 |
| amiA | SBO_2460 | N-acetylmuramoyl-l-alanine amidase I | SubName: Full=N-acetylmuramoyl-l-alanine amidase I; | chromosome | CDS | 2450665 | 870 | + | 0.504598 |
| amiB | SBO_4287 | N-acetylmuramoyl-l-alanine amidase II | SubName: Full=N-acetylmuramoyl-l-alanine amidase II; | chromosome | CDS | 4336878 | 1338 | - | 0.550822 |
| asmA | SBO_0891 | suppressor of ompF assembly mutants | SubName: Full=Suppressor of ompF assembly mutants; | chromosome | CDS | 910635 | 1854 | - | 0.524272 |
| blc | SBO_4307 | outer membrane lipoprotein | SubName: Full=Outer membrane lipoprotein; | chromosome | CDS | 4356369 | 534 | + | 0.535581 |
| cfa | SBO_1470 | cyclopropane fatty acyl phospholipid synthase | SubName: Full=Cyclopropane fatty acyl phospholipid synthase; | chromosome | CDS | 1446431 | 1149 | - | 0.482158 |
| cutF | SBO_0181 | copper homeostasis protein (lipoprotein) | SubName: Full=Copper homeostasis protein (Lipoprotein); | chromosome | CDS | 201253 | 711 | + | 0.514768 |
| dacA | SBO_0496 | D-alanyl-D-alanine carboxypeptidase, fraction A | SubName: Full=D-alanyl-D-alanine carboxypeptidase, fraction A; | chromosome | CDS | 513163 | 1212 | - | 0.492574 |
| dacB | SBO_3200 | D-alanyl-D-alanine carboxypeptidase, fraction B | SubName: Full=D-alanyl-D-alanine carboxypeptidase, fraction B; | chromosome | CDS | 3204594 | 1434 | - | 0.529986 |
| dapA | SBO_2495 | dihydrodipicolinate synthase | RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase; Short=HTPA synthase; EC=4.3.3.7; | chromosome | CDS | 2488926 | 879 | - | 0.518771 |
| ddg | SBO_2404 | putative heat shock protein | SubName: Full=Putative heat shock protein; | chromosome | CDS | 2397508 | 987 | + | 0.507599 |
| ddlA | SBO_0276 | D-alanine-D-alanine ligase A | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 289000 | 1095 | - | 0.509589 |
| ddlB | SBO_0080 | D-alanine-D-alanine ligase B | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 90236 | 921 | + | 0.51683 |
| dgkA | SBO_4075 | diacylglycerol kinase | SubName: Full=Diacylglycerol kinase; | chromosome | CDS | 4116654 | 369 | - | 0.520325 |
| dniR | SBO_0200 | transcriptional regulator for nitrite reductase | SubName: Full=Transcriptional regulator for nitrite reductase; | chromosome | CDS | 218552 | 1359 | - | 0.520971 |
| fepE | SBO_0448 | ferric enterobactin (enterochelin) transport | SubName: Full=Ferric enterobactin (Enterochelin) transport; | chromosome | CDS | 466731 | 1134 | + | 0.446208 |
| fimH | SBO_4370 | minor fimbrial subunit | SubName: Full=Minor fimbrial subunit; | chromosome | CDS | 4422589 | 795 | + | 0.500629 |
| ftsI | SBO_0072 | penicillin-binding protein 3 | SubName: Full=Penicillin-binding protein 3; | chromosome | CDS | 79416 | 1767 | + | 0.537634 |
| ftsQ | SBO_0081 | FtsQ | RecName: Full=Cell division protein FtsQ; | chromosome | CDS | 91158 | 831 | + | 0.534296 |
| galE | SBO_0614 | UDP-galactose-4-epimerase | SubName: Full=UDP-galactose-4-epimerase; | chromosome | CDS | 634691 | 1017 | - | 0.543756 |
| galF | SBO_0869 | probable UDP-gal transferase | SubName: Full=Probable UDP-gal transferase; | chromosome | CDS | 884041 | 894 | - | 0.51566 |
| galU | SBO_1833 | glucose-1-phosphate uridylyltransferase | SubName: Full=Glucose-1-phosphate uridylyltransferase; | chromosome | CDS | 1811478 | 909 | - | 0.471947 |
| gidB | SBO_3747 | GidB | RecName: Full=Ribosomal RNA small subunit methyltransferase G; EC=2.1.1.170; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase; | chromosome | CDS | 3766116 | 624 | + | 0.487179 |
| glmS | SBO_3758 | L-glutamine:D-fructose-6-phosphateaminotransfera se | RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; | chromosome | CDS | 3776125 | 1830 | + | 0.537158 |
| glmU | SBO_3757 | N-acetyl glucosamine-1-phosphate uridyltransferase | RecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; | chromosome | CDS | 3774593 | 1371 | + | 0.528082 |
| gmd | SBO_0880 | GDP-D-mannose dehydratase | RecName: Full=GDP-mannose 4,6-dehydratase; EC=4.2.1.47; AltName: Full=GDP-D-mannose dehydratase; | chromosome | CDS | 897984 | 1122 | - | 0.548128 |
| hemM | SBO_1858 | HemM | RecName: Full=Outer-membrane lipoprotein LolB; Flags: Precursor; | chromosome | CDS | 1839159 | 624 | + | 0.514423 |
| hlpA | SBO_0166 | histone-like protein | RecName: Full=Chaperone protein Skp; Flags: Precursor; | chromosome | CDS | 186499 | 486 | + | 0.502058 |
| htrB | SBO_2011 | heat shock protein | SubName: Full=Heat shock protein; | chromosome | CDS | 1981357 | 921 | + | 0.530945 |
| imp | SBO_0043 | organic solvent tolerance | RecName: Full=LPS-assembly protein LptD; Flags: Precursor; | chromosome | CDS | 43817 | 2355 | - | 0.51465 |
| kdsA | SBO_1852 | 2-dehydro-3-deoxyphosphooctulonate aldolase | RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; EC=2.5.1.55; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase; | chromosome | CDS | 1833639 | 855 | - | 0.51462 |
| kdsB | SBO_2206 | CTP:CMP-3-deoxy-D-manno-octulosonate transferase | RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; EC=2.7.7.38; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase; | chromosome | CDS | 2186807 | 747 | + | 0.528782 |
| kdtA | SBO_3635 | 3-deoxy-D-manno-octulosonic-acid transferase | SubName: Full=3-deoxy-D-manno-octulosonic-acid transferase; | chromosome | CDS | 3654138 | 1278 | + | 0.539124 |
| lepA | SBO_2597 | GTP-binding elongation factor | RecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; | chromosome | CDS | 2602404 | 1800 | - | 0.536111 |
| lgt | SBO_2720 | phosphatidylglycerol-prolipoprotein diacylglyceryl transferase | RecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; | chromosome | CDS | 2730411 | 876 | - | 0.522831 |
| lnt | SBO_0521 | apolipoprotein N-acyltransferase | RecName: Full=Apolipoprotein N-acyltransferase; Short=ALP N-acyltransferase; EC=2.3.1.-; | chromosome | CDS | 540224 | 1539 | - | 0.551657 |
| lolA | SBO_0824 | LolA | RecName: Full=Outer-membrane lipoprotein carrier protein; Flags: Precursor; | chromosome | CDS | 840208 | 615 | + | 0.505691 |
| lpp | SBO_1453 | murein lipoprotein | SubName: Full=Murein lipoprotein; | chromosome | CDS | 1430637 | 237 | - | 0.506329 |
| lpxA | SBO_0169 | UDP-N-acetylglucosamine acetyltransferase | RecName: Full=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Short=UDP-N-acetylglucosamine acyltransferase; EC=2.3.1.129; | chromosome | CDS | 188577 | 789 | + | 0.531052 |
| lpxB | SBO_0170 | tetraacyldisaccharide-1-P | RecName: Full=Lipid-A-disaccharide synthase; EC=2.4.1.182; | chromosome | CDS | 189365 | 1149 | + | 0.536989 |
| lpxC | SBO_0083 | UDP-3-O-acyl N-acetylglucosamine deacetylase | RecName: Full=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; EC=3.5.1.-; AltName: Full=UDP-3-O-acyl-GlcNAc deacetylase; | chromosome | CDS | 94560 | 918 | + | 0.507625 |
| lpxD | SBO_0167 | UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferase | RecName: Full=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase; Short=UDP-3-O-(3-OHC14)-GlcN N-acyltransferase; EC=2.3.1.191; | chromosome | CDS | 186988 | 1026 | + | 0.530214 |
| lspA | SBO_0026 | prolipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 25299 | 495 | + | 0.533333 |
| lytB | SBO_0028 | LytB | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome | CDS | 26313 | 951 | + | 0.550999 |
| mepA | SBO_2365 | murein DD-endopeptidase | RecName: Full=Penicillin-insensitive murein endopeptidase; EC=3.4.24.-; AltName: Full=D-alanyl-D-alanine-endopeptidase; Short=DD-endopeptidase; Flags: Precursor; | chromosome | CDS | 2354510 | 825 | - | 0.552727 |
| mltA | SBO_2696 | membrane-bound lytic murein transglycosylase A | SubName: Full=Membrane-bound lytic murein transglycosylase A; | chromosome | CDS | 2702547 | 1098 | - | 0.530055 |
| mltB | SBO_2817 | membrane-bound lytic murein transglycosylase B | SubName: Full=Membrane-bound lytic murein transglycosylase B; | chromosome | CDS | 2826269 | 1086 | + | 0.552486 |
| mltC | SBO_3027 | membrane-bound lytic murein transglycosylase C | RecName: Full=Membrane-bound lytic murein transglycosylase C; EC=4.2.2.n1; AltName: Full=Murein lyase C; Flags: Precursor; | chromosome | CDS | 3028029 | 1083 | - | 0.509695 |
| mltE | SBO_1880 | murein transglycosylase E | RecName: Full=Endo-type membrane-bound lytic murein transglycosylase A; EC=4.2.2.n2; AltName: Full=Peptidoglycan lytic endotransglycosylase; Flags: Precursor; | chromosome | CDS | 1861710 | 726 | - | 0.509642 |
| mraY | SBO_0075 | putative phospho-N-acetylmuramoyl-pentapeptide transferase | RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; | chromosome | CDS | 84005 | 1083 | + | 0.532779 |
| mrcA | SBO_3383 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 3364872 | 2577 | + | 0.552581 |
| mrcB | SBO_0138 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 150949 | 2523 | + | 0.552517 |
| mrdA | SBO_0499 | cell elongation, e phase | SubName: Full=Cell elongation, e phase; | chromosome | CDS | 516728 | 1902 | - | 0.526814 |
| mreC | SBO_3138 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3141459 | 1086 | + | 0.556169 |
| mreD | SBO_3139 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3142544 | 489 | + | 0.507157 |
| msbB | SBO_1172 | MsbB | SubName: Full=MsbB; | chromosome | CDS | 1171093 | 972 | - | 0.510288 |
| mscL | SBO_3284 | mechanosensitive channel | RecName: Full=Large-conductance mechanosensitive channel; | chromosome | CDS | 3286306 | 411 | + | 0.452555 |
| mtgA | SBO_3174 | putative peptidoglycan enzyme | RecName: Full=Monofunctional biosynthetic peptidoglycan transglycosylase; Short=Monofunctional TGase; EC=2.4.2.-; | chromosome | CDS | 3185328 | 729 | + | 0.51989 |
| murA | SBO_3193 | UDP-N-glucosamine 1-carboxyvinyltransferase | RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT; | chromosome | CDS | 3198642 | 1260 | + | 0.530952 |
| murB | SBO_3992 | UDP-N-acetylenolpyruvoylglucosamine reductase | RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; | chromosome | CDS | 4030479 | 1029 | + | 0.463557 |
| murC | SBO_0079 | UDP-N-acetyl-muramate:alanine ligase | RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; EC=6.3.2.8; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; | chromosome | CDS | 88768 | 1476 | + | 0.545393 |
| murD | SBO_0076 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; | chromosome | CDS | 85090 | 1317 | + | 0.553531 |
| murE | SBO_0073 | meso-diaminopimelate-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; EC=6.3.2.13; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; | chromosome | CDS | 81169 | 1488 | + | 0.563172 |
| murF | SBO_0074 | D-alanine:D-alanine-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; EC=6.3.2.10; | chromosome | CDS | 82653 | 1359 | + | 0.551141 |
| murG | SBO_0078 | UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; | chromosome | CDS | 87647 | 1068 | + | 0.561798 |
| murI | SBO_3986 | glutamate racemase | RecName: Full=Glutamate racemase; EC=5.1.1.3; | chromosome | CDS | 4023997 | 870 | + | 0.514943 |
| nanA | SBO_3164 | N-acetylneuraminate lyase | RecName: Full=N-acetylneuraminate lyase; EC=4.1.3.3; AltName: Full=N-acetylneuraminate pyruvate-lyase; AltName: Full=N-acetylneuraminic acid aldolase; AltName: Full=Sialate lyase; AltName: Full=Sialic acid aldolase; AltName: Full=Sialic acid lyase; | chromosome | CDS | 3168898 | 894 | + | 0.517897 |
| nlpB | SBO_2494 | lipoprotein-34 | RecName: Full=Outer membrane protein assembly factor BamC; Flags: Precursor; | chromosome | CDS | 2487875 | 1038 | - | 0.55106 |
| nlpC | SBO_1420 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 1395560 | 465 | + | 0.492473 |
| nlpD | SBO_2778 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 2784526 | 1092 | + | 0.525641 |
| ompA | SBO_2274 | outer membrane protein 3a | SubName: Full=Outer membrane protein 3a; | chromosome | CDS | 2260261 | 1047 | + | 0.531996 |
| ompC | SBO_2092 | outer membrane protein 1b (Ib;c) | SubName: Full=Outer membrane protein 1b (Ibc); | chromosome | CDS | 2072853 | 1122 | + | 0.503565 |
| ompF | SBO_2220 | outer membrane protein 1a | SubName: Full=Outer membrane protein 1a; | chromosome | CDS | 2204064 | 1089 | - | 0.475666 |
| ompX | SBO_0705 | outer membrane protein X | SubName: Full=Outer membrane protein X; | chromosome | CDS | 720125 | 516 | + | 0.513566 |
| pal | SBO_0600 | peptidoglycan-associated lipoprotein | SubName: Full=Peptidoglycan-associated lipoprotein; | chromosome | CDS | 623636 | 522 | + | 0.51341 |
| pbpC | SBO_2543 | putative peptidoglycan enzyme | SubName: Full=Putative peptidoglycan enzyme; | chromosome | CDS | 2540735 | 2313 | - | 0.56377 |
| pbpG | SBO_1010 | penicillin-binding protein 7 | SubName: Full=Penicillin-binding protein 7; | chromosome | CDS | 1027857 | 942 | + | 0.503185 |
| phoE | SBO_0247 | outer membrane pore protein E | SubName: Full=Outer membrane pore protein E; | chromosome | CDS | 262510 | 1056 | - | 0.447917 |
| pldA | SBO_3833 | outer membrane phospholipase A | SubName: Full=Outer membrane phospholipase A; | chromosome | CDS | 3854990 | 870 | + | 0.509195 |
| prc | SBO_1245 | carboxy-terminal protease for penicillin-binding protein 3 | SubName: Full=Carboxy-terminal protease for penicillin-binding protein 3; | chromosome | CDS | 1239424 | 2049 | - | 0.505612 |
| rfaC | SBO_3626 | heptosyl transferase I | SubName: Full=Heptosyl transferase I; | chromosome | CDS | 3643542 | 981 | + | 0.508665 |
| rfaD | SBO_3624 | ADP-L-glycero-D-mannoheptose-6-epimerase | RecName: Full=ADP-L-glycero-D-manno-heptose-6-epimerase; EC=5.1.3.20; AltName: Full=ADP-L-glycero-beta-D-manno-heptose-6-epimerase; Short=ADP-glyceromanno-heptose 6-epimerase; Short=ADP-hep 6-epimerase; Short=AGME; | chromosome | CDS | 3641550 | 933 | + | 0.513398 |
| rfaF | SBO_3625 | ADP-heptose--lps heptosyltransferase II | SubName: Full=ADP-heptose--lps heptosyltransferase II; | chromosome | CDS | 3642492 | 1047 | + | 0.539637 |
| rfaG | SBO_3633 | glucosyltransferase I | SubName: Full=Glucosyltransferase I; | chromosome | CDS | 3651546 | 1125 | - | 0.480889 |
| rfbA | SBO_0866 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 880748 | 879 | - | 0.434585 |
| rfbB | SBO_0868 | dTDP-glucose 4,6 dehydratase | RecName: Full=dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; | chromosome | CDS | 882583 | 1086 | - | 0.430018 |
| rfbC | SBO_0865 | dTDP-4-dehydrorhamnose 3,5-epimerase | SubName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; | chromosome | CDS | 880174 | 570 | - | 0.389474 |
| rfbD | SBO_0867 | dTDP-6-deoxy-L-mannose-dehydrogenase | SubName: Full=dTDP-6-deoxy-L-mannose-dehydrogenase; | chromosome | CDS | 881684 | 900 | - | 0.472222 |
| rfe | SBO_3795 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase | SubName: Full=UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; | chromosome | CDS | 3817402 | 1104 | + | 0.494565 |
| rffG | SBO_3799 | dTDP-glucose 4,6-dehydratase | RecName: Full=dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; | chromosome | CDS | 3822008 | 1068 | + | 0.535581 |
| rffH | SBO_3800 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 3823094 | 882 | + | 0.549887 |
| rhsA | SBO_3593 | RhsA | SubName: Full=RhsA; | chromosome | CDS | 3603085 | 4230 | + | 0.59078 |
| rhsC | SBO_0563 | rhsC protein in rhs element | SubName: Full=RhsC protein in rhs element; | chromosome | CDS | 580457 | 4152 | + | 0.596098 |
| rlpA | SBO_0497 | RlpA | SubName: Full=RlpA; | chromosome | CDS | 514514 | 1089 | - | 0.576676 |
| rlpB | SBO_0505 | RlpB | RecName: Full=LPS-assembly lipoprotein LptE; Flags: Precursor; | chromosome | CDS | 522016 | 582 | - | 0.522337 |
| slp | SBO_3505 | Slp | SubName: Full=Slp; | chromosome | CDS | 3499494 | 600 | + | 0.445 |
| slt | SBO_4455 | soluble lytic murein transglycosylase | SubName: Full=Soluble lytic murein transglycosylase; | chromosome | CDS | 4508930 | 1965 | + | 0.543003 |
| slyB | SBO_1493 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1470469 | 468 | - | 0.512821 |
| spr | SBO_2149 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 2124471 | 567 | - | 0.465608 |
| tolA | SBO_0598 | TolA | SubName: Full=TolA; | chromosome | CDS | 620935 | 1242 | + | 0.522544 |
| tolC | SBO_2893 | TolC | SubName: Full=TolC; | chromosome | CDS | 2896090 | 1488 | + | 0.514785 |
| tonB | SBO_1813 | TonB | SubName: Full=TonB; | chromosome | CDS | 1791187 | 729 | - | 0.545953 |
| tsx | SBO_0305 | Tsx | SubName: Full=Tsx; | chromosome | CDS | 320100 | 885 | - | 0.501695 |
| ugd | SBO_0857 | UDP-glucose 6-dehydrogenase | SubName: Full=UDP-glucose 6-dehydrogenase; | chromosome | CDS | 870640 | 1167 | - | 0.425021 |
| vacJ | SBO_2388 | lipoprotein precursor | SubName: Full=Lipoprotein; | chromosome | CDS | 2378138 | 756 | - | 0.522487 |
| waaI | SBO_3631 | UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferase | SubName: Full=UDP-D-galactose:(Glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase; | chromosome | CDS | 3649724 | 1017 | - | 0.382498 |
| waaJ | SBO_3630 | lipopolysaccharide 1,2-glucosyltransferase | SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase; | chromosome | CDS | 3648712 | 996 | - | 0.353414 |
| waaL | SBO_3627 | lipid A-core surface polymer ligase | SubName: Full=Lipid A-core surface polymer ligase; | chromosome | CDS | 3644592 | 1254 | - | 0.331738 |
| waaQ | SBO_3634 | lipopolysaccharide core biosynthesis protein | SubName: Full=Lipopolysaccharide core biosynthesis protein; | chromosome | CDS | 3652667 | 1059 | - | 0.468366 |
| waaW | SBO_3628 | UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase | SubName: Full=UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase; | chromosome | CDS | 3646959 | 1026 | - | 0.367446 |
| wbdF | SBO_0863 | putative glycosyl transferase | SubName: Full=Putative glycosyl transferase; | chromosome | CDS | 878236 | 1113 | - | 0.269542 |
| wbdG | SBO_0861 | putative glycosyl transferase | SubName: Full=Putative glycosyl transferase; | chromosome | CDS | 875931 | 1011 | - | 0.298714 |
| wbdS | SBO_0859 | putative glycosyl transferase | SubName: Full=Putative glycosyl transferase; | chromosome | CDS | 873587 | 1077 | - | 0.317549 |
| wcaA | SBO_0886 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 903349 | 840 | - | 0.509524 |
| wcaC | SBO_0884 | putative glycosyl transferase | SubName: Full=Putative glycosyl transferase; | chromosome | CDS | 901644 | 1218 | - | 0.536125 |
| wcaE | SBO_0882 | putative colanic acid biosynthesis glycosyl transferase | SubName: Full=Putative colanic acid biosynthesis glycosyl transferase; | chromosome | CDS | 899695 | 747 | - | 0.455154 |
| wcaG | SBO_0879 | putative nucleotide di-P-sugar epimerase | RecName: Full=GDP-L-fucose synthase; EC=1.1.1.271; AltName: Full=GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase; | chromosome | CDS | 897016 | 966 | - | 0.562112 |
| wcaJ | SBO_0874 | putative colanic acid biosynthsis UDP-glucose lipid carrier transferase | SubName: Full=Putative colanic acid biosynthsis UDP-glucose lipid carrier transferase; | chromosome | CDS | 890863 | 1395 | - | 0.536201 |
| wcaL | SBO_0871 | putative colanic acid biosynthesis glycosyl transferase | SubName: Full=Putative colanic acid biosynthesis glycosyl transferase; | chromosome | CDS | 886514 | 1221 | - | 0.542179 |
| wecB | SBO_3797 | UDP-N-acetyl glucosamine-2-epimerase | RecName: Full=UDP-N-acetylglucosamine 2-epimerase; EC=5.1.3.14; | chromosome | CDS | 3819664 | 1086 | + | 0.518416 |
| wecC | SBO_3798 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase | SubName: Full=UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; | chromosome | CDS | 3820746 | 1263 | + | 0.539192 |
| wecE | SBO_3802 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 3824632 | 1131 | + | 0.542882 |
| wecG | SBO_3806 | probable UDP-N-acetyl-D-mannosaminuronic acid transferase | RecName: Full=UDP-N-acetyl-D-mannosaminuronic acid transferase; Short=UDP-ManNAcA transferase; EC=2.4.1.180; | chromosome | CDS | 3829442 | 741 | + | 0.535762 |
| wza | SBO_0889 | putative polysaccharide export protein | SubName: Full=Putative polysaccharide export protein; | chromosome | CDS | 906980 | 1140 | - | 0.530702 |
| wzy | SBO_0860 | O-antigen polymerase | SubName: Full=O-antigen polymerase; | chromosome | CDS | 874635 | 1293 | - | 0.280742 |
| wzzB | SBO_0853 | regulator of length of O-antigen component of lipopolysaccharide chains | SubName: Full=Regulator of length of O-antigen component of lipopolysaccharide chains; | chromosome | CDS | 866871 | 1035 | - | 0.4657 |
| wzzE | SBO_3796 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3818514 | 1050 | + | 0.527619 |
| yabC | SBO_0070 | putative apolipoprotein | RecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; | chromosome | CDS | 78097 | 942 | + | 0.552017 |
| yaeF | SBO_0182 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 202163 | 618 | - | 0.491909 |
| yaeL | SBO_0164 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 182563 | 1353 | + | 0.506282 |
| yaeT | SBO_0165 | conserved hypothetical protein | RecName: Full=Outer membrane protein assembly factor BamA; Flags: Precursor; | chromosome | CDS | 183945 | 2433 | + | 0.504727 |
| yaiU | SBO_0269 | putative flagellin structural protein | SubName: Full=Putative flagellin structural protein; | chromosome | CDS | 282183 | 1407 | + | 0.496091 |
| yajG | SBO_0328 | putative polymerase/proteinase | SubName: Full=Putative polymerase/proteinase; | chromosome | CDS | 342436 | 681 | - | 0.503671 |
| ybdG | SBO_0438 | putative transport | SubName: Full=Putative transport; | chromosome | CDS | 453244 | 1248 | - | 0.478365 |
| ybiO | SBO_0698 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 711544 | 2163 | - | 0.52797 |
| ybjT | SBO_0802 | putative dTDP-glucose enzyme | SubName: Full=Putative dTDP-glucose enzyme; | chromosome | CDS | 809657 | 1431 | - | 0.547869 |
| ycaH | SBO_2203 | putative enzyme | RecName: Full=Tetraacyldisaccharide 4-kinase; EC=2.7.1.130; AltName: Full=Lipid A 4-kinase; | chromosome | CDS | 2184321 | 987 | + | 0.546099 |
| yccC | SBO_2249 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2236105 | 2181 | + | 0.504814 |
| yccZ | SBO_2247 | putative function in exopolysaccharide production | SubName: Full=Putative function in exopolysaccharide production; | chromosome | CDS | 2234512 | 1140 | + | 0.509649 |
| ycfN | SBO_1955 | putative beta-glucosidase | RecName: Full=Thiamine kinase; EC=2.7.1.89; | chromosome | CDS | 1930472 | 825 | - | 0.529697 |
| ycfU | SBO_1945 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1917912 | 1200 | - | 0.538333 |
| ycfW | SBO_1943 | putative kinase | SubName: Full=Putative kinase; | chromosome | CDS | 1915974 | 1245 | - | 0.515663 |
| ycgR | SBO_1878 | conserved hypothetical protein | RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR; | chromosome | CDS | 1860974 | 735 | + | 0.507483 |
| yciD | SBO_1809 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1788337 | 639 | - | 0.499218 |
| ycjG | SBO_1745 | putative muconate cycloisomerase I | SubName: Full=Putative muconate cycloisomerase I; EC=5.5.-.-; | chromosome | CDS | 1724190 | 915 | - | 0.546448 |
| ydhO | SBO_1476 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 1453732 | 816 | - | 0.476716 |
| yeaF | SBO_1311 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1296811 | 747 | + | 0.52075 |
| yeaV | SBO_1287 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 1276954 | 1446 | - | 0.507607 |
| yebA | SBO_1173 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1172184 | 1323 | - | 0.529101 |
| yegX | SBO_0923 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 953029 | 828 | - | 0.475845 |
| yehZ | SBO_1013 | putative transport system permease protein | SubName: Full=Putative transport system permease protein; | chromosome | CDS | 1033297 | 918 | + | 0.541394 |
| yfhD | SBO_2586 | putative periplasmic binding transport protein | RecName: Full=Membrane-bound lytic murein transglycosylase F; EC=4.2.2.n1; AltName: Full=Murein lyase F; Flags: Precursor; | chromosome | CDS | 2593018 | 1419 | + | 0.503171 |
| yfiB | SBO_2741 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 2752506 | 483 | + | 0.511387 |
| ygcX | SBO_2668 | putative glucarate dehydratase | SubName: Full=Putative glucarate dehydratase; | chromosome | CDS | 2674758 | 1341 | - | 0.534676 |
| ygcY | SBO_2669 | putative glucarate dehydratase | SubName: Full=Putative glucarate dehydratase; | chromosome | CDS | 2676119 | 1341 | - | 0.537658 |
| ygeA | SBO_2732 | putative resistance proteins | SubName: Full=Putative resistance proteins; | chromosome | CDS | 2744996 | 693 | - | 0.503608 |
| yggB | SBO_3069 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3066872 | 861 | + | 0.497096 |
| yhfN | SBO_3359 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3343293 | 1044 | + | 0.543103 |
| yhiI | SBO_3482 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3473046 | 1068 | - | 0.590824 |
| yhiU | SBO_3512 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3504798 | 1158 | + | 0.546632 |
| yhjG | SBO_3523 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3521908 | 2076 | - | 0.531792 |
| yhjO | SBO_3532 | putative cellulose synthase | SubName: Full=Putative cellulose synthase; | chromosome | CDS | 3538235 | 2661 | - | 0.553176 |
| yiaD | SBO_3554 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 3563421 | 660 | + | 0.581818 |
| yjeP | SBO_4298 | putative periplasmic binding protein | SubName: Full=Putative periplasmic binding protein; | chromosome | CDS | 4345142 | 3324 | + | 0.555656 |
| yjfG | SBO_4213 | putative ligase | SubName: Full=Putative ligase; | chromosome | CDS | 4265226 | 1374 | - | 0.55313 |
| ylcD | SBO_0435 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 447416 | 1128 | + | 0.560284 |
| yohK | SBO_0999 | putative seritonin transporter | SubName: Full=Putative seritonin transporter; | chromosome | CDS | 1018967 | 696 | - | 0.533046 |
| yqhH | SBO_3008 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3009589 | 258 | + | 0.484496 |
| yraR | SBO_3230 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3236187 | 681 | + | 0.550661 |
| ytfB | SBO_4239 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4295204 | 675 | + | 0.554074 |
| ytfG | SBO_4231 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 4289155 | 861 | + | 0.538908 |
| ytfM | SBO_4223 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4279081 | 1734 | - | 0.532872 |
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