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2024-05-05 21:38:45

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 212

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_1659 conserved hypothetical proteinchromosome CDS1641845 765 + 0.48366
NA SBO_0683 putative membrane proteinchromosome CDS695763 999 - 0.572573
NA SBO_1200 tail assembly proteinchromosome CDS1196089 819 - 0.571429
NA SBO_0856 putative nucleotide sugar epimerasechromosome CDS870137 438 + 0.39726
NA SBO_0900 putative membrane proteinchromosome CDS924238 1395 + 0.536918
NA SBO_0399 conserved hypothetical proteinchromosome CDS417077 303 + 0.636964
NA SBO_2908 putative kinasechromosome CDS2909966 1434 - 0.564854
NA SBO_2707 putative amidasechromosome CDS2710491 1344 - 0.526786
NA SBO_1732 conserved hypothetical proteinchromosome CDS1713240 1032 + 0.436047
NA SBO_1743 conserved hypothetical proteinchromosome CDS1722587 591 + 0.42132
NA SBO_1921 putative membrane protein, energy transducerchromosome CDS1901423 333 - 0.432432
NA SBO_3954 putative protein in rhs elementchromosome CDS3980961 2784 + 0.614583
NA SBO_1282 putative outer membrane proteinchromosome CDS1271056 582 + 0.537801
NA SBO_3121 putative lipoproteinchromosome CDS3125956 780 + 0.502564
NA SBO_0801 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS808545 1050 - 0.538095
NA SBO_1900 conserved hypothetical proteinchromosome CDS1881107 1137 - 0.469657
NA SBO_2290 putative enzymechromosome CDS2278065 1173 + 0.515772
NA SBO_1585 putative outer membrane porin proteinchromosome CDS1580524 291 + 0.415808
NA SBO_2294 conserved hypothetical proteinchromosome CDS2283078 1653 + 0.510587
NA SBO_1590 conserved hypothetical proteinchromosome CDS1583209 234 - 0.547009
NA SBO_1368 conserved hypothetical proteinchromosome CDS1345869 759 + 0.491436
NA SBO_1689 putative outer membrane proteinchromosome CDS1675988 1134 + 0.464727
NA SBO_1626 tail assembly proteinchromosome CDS1615242 555 - 0.589189
NA SBO_2291 putative sugar transferasechromosome CDS2279241 969 + 0.49742
NA SBO_2703 putative isomerasechromosome CDS2706143 477 - 0.412998
NA SBO_0640 putative transglycosylasechromosome CDS652860 999 + 0.551552
NA SBO_0842 putative enzyme of sugar metabolismchromosome CDS857853 825 - 0.512727
NA SBO_0401 putative protein in rhs elementchromosome CDS417819 3018 + 0.624254
NA SBO_1899 conserved hypothetical proteinchromosome CDS1880654 372 - 0.478495
NA SBO_0811 putative membrane proteinchromosome CDS822012 1143 + 0.524934
NA SBO_2482 conserved hypothetical proteinchromosome CDS2471784 1044 - 0.552682
NA SBO_2047 putative racemasechromosome CDS2018392 1218 + 0.521346
NA SBO_1041 putative outer membrane porin protein C precurserchromosome CDS1057479 498 - 0.411647
NA SBO_1600 putative resistance proteinchromosome CDS1592713 519 + 0.527938
NA SBO_1569 conserved hypothetical proteinchromosome CDS1563832 582 + 0.530928
NA SBO_0400 putative protein in rhs elementchromosome CDS417237 405 + 0.632099
NA SBO_3108 conserved hypothetical proteinchromosome CDS3109319 708 + 0.504237
acrA SBO_0363 acridine efflux pumpchromosome CDS377737 1194 - 0.538526
acrE SBO_3259 AcrEchromosome CDS3262097 1119 + 0.522788
aefA SBO_0365 putative alpha helix proteinchromosome CDS379847 3363 + 0.518287
alr SBO_4064 alanine racemase 1chromosome CDS4106799 1080 - 0.556481
amiA SBO_2460 N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2450665 870 + 0.504598
amiB SBO_4287 N-acetylmuramoyl-l-alanine amidase IIchromosome CDS4336878 1338 - 0.550822
asmA SBO_0891 suppressor of ompF assembly mutantschromosome CDS910635 1854 - 0.524272
blc SBO_4307 outer membrane lipoproteinchromosome CDS4356369 534 + 0.535581
cfa SBO_1470 cyclopropane fatty acyl phospholipid synthasechromosome CDS1446431 1149 - 0.482158
cutF SBO_0181 copper homeostasis protein (lipoprotein)chromosome CDS201253 711 + 0.514768
dacA SBO_0496 D-alanyl-D-alanine carboxypeptidase, fraction Achromosome CDS513163 1212 - 0.492574
dacB SBO_3200 D-alanyl-D-alanine carboxypeptidase, fraction Bchromosome CDS3204594 1434 - 0.529986
dapA SBO_2495 dihydrodipicolinate synthasechromosome CDS2488926 879 - 0.518771
ddg SBO_2404 putative heat shock proteinchromosome CDS2397508 987 + 0.507599
ddlA SBO_0276 D-alanine-D-alanine ligase Achromosome CDS289000 1095 - 0.509589
ddlB SBO_0080 D-alanine-D-alanine ligase Bchromosome CDS90236 921 + 0.51683
dgkA SBO_4075 diacylglycerol kinasechromosome CDS4116654 369 - 0.520325
dniR SBO_0200 transcriptional regulator for nitrite reductasechromosome CDS218552 1359 - 0.520971
fepE SBO_0448 ferric enterobactin (enterochelin) transportchromosome CDS466731 1134 + 0.446208
fimH SBO_4370 minor fimbrial subunitchromosome CDS4422589 795 + 0.500629
ftsI SBO_0072 penicillin-binding protein 3chromosome CDS79416 1767 + 0.537634
ftsQ SBO_0081 FtsQchromosome CDS91158 831 + 0.534296
galE SBO_0614 UDP-galactose-4-epimerasechromosome CDS634691 1017 - 0.543756
galF SBO_0869 probable UDP-gal transferasechromosome CDS884041 894 - 0.51566
galU SBO_1833 glucose-1-phosphate uridylyltransferasechromosome CDS1811478 909 - 0.471947
gidB SBO_3747 GidBchromosome CDS3766116 624 + 0.487179
glmS SBO_3758 L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS3776125 1830 + 0.537158
glmU SBO_3757 N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS3774593 1371 + 0.528082
gmd SBO_0880 GDP-D-mannose dehydratasechromosome CDS897984 1122 - 0.548128
hemM SBO_1858 HemMchromosome CDS1839159 624 + 0.514423
hlpA SBO_0166 histone-like proteinchromosome CDS186499 486 + 0.502058
htrB SBO_2011 heat shock proteinchromosome CDS1981357 921 + 0.530945
imp SBO_0043 organic solvent tolerancechromosome CDS43817 2355 - 0.51465
kdsA SBO_1852 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS1833639 855 - 0.51462
kdsB SBO_2206 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS2186807 747 + 0.528782
kdtA SBO_3635 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS3654138 1278 + 0.539124
lepA SBO_2597 GTP-binding elongation factorchromosome CDS2602404 1800 - 0.536111
lgt SBO_2720 phosphatidylglycerol-prolipoprotein diacylglyceryl transferasechromosome CDS2730411 876 - 0.522831
lnt SBO_0521 apolipoprotein N-acyltransferasechromosome CDS540224 1539 - 0.551657
lolA SBO_0824 LolAchromosome CDS840208 615 + 0.505691
lpp SBO_1453 murein lipoproteinchromosome CDS1430637 237 - 0.506329
lpxA SBO_0169 UDP-N-acetylglucosamine acetyltransferasechromosome CDS188577 789 + 0.531052
lpxB SBO_0170 tetraacyldisaccharide-1-Pchromosome CDS189365 1149 + 0.536989
lpxC SBO_0083 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS94560 918 + 0.507625
lpxD SBO_0167 UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS186988 1026 + 0.530214
lspA SBO_0026 prolipoprotein signal peptidasechromosome CDS25299 495 + 0.533333
lytB SBO_0028 LytBchromosome CDS26313 951 + 0.550999
mepA SBO_2365 murein DD-endopeptidasechromosome CDS2354510 825 - 0.552727
mltA SBO_2696 membrane-bound lytic murein transglycosylase Achromosome CDS2702547 1098 - 0.530055
mltB SBO_2817 membrane-bound lytic murein transglycosylase Bchromosome CDS2826269 1086 + 0.552486
mltC SBO_3027 membrane-bound lytic murein transglycosylase Cchromosome CDS3028029 1083 - 0.509695
mltE SBO_1880 murein transglycosylase Echromosome CDS1861710 726 - 0.509642
mraY SBO_0075 putative phospho-N-acetylmuramoyl-pentapeptide transferasechromosome CDS84005 1083 + 0.532779
mrcA SBO_3383 peptidoglycan synthetasechromosome CDS3364872 2577 + 0.552581
mrcB SBO_0138 peptidoglycan synthetasechromosome CDS150949 2523 + 0.552517
mrdA SBO_0499 cell elongation, e phasechromosome CDS516728 1902 - 0.526814
mreC SBO_3138 rod shape-determining proteinchromosome CDS3141459 1086 + 0.556169
mreD SBO_3139 rod shape-determining proteinchromosome CDS3142544 489 + 0.507157
msbB SBO_1172 MsbBchromosome CDS1171093 972 - 0.510288
mscL SBO_3284 mechanosensitive channelchromosome CDS3286306 411 + 0.452555
mtgA SBO_3174 putative peptidoglycan enzymechromosome CDS3185328 729 + 0.51989
murA SBO_3193 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3198642 1260 + 0.530952
murB SBO_3992 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS4030479 1029 + 0.463557
murC SBO_0079 UDP-N-acetyl-muramate:alanine ligasechromosome CDS88768 1476 + 0.545393
murD SBO_0076 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS85090 1317 + 0.553531
murE SBO_0073 meso-diaminopimelate-adding enzymechromosome CDS81169 1488 + 0.563172
murF SBO_0074 D-alanine:D-alanine-adding enzymechromosome CDS82653 1359 + 0.551141
murG SBO_0078 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS87647 1068 + 0.561798
murI SBO_3986 glutamate racemasechromosome CDS4023997 870 + 0.514943
nanA SBO_3164 N-acetylneuraminate lyasechromosome CDS3168898 894 + 0.517897
nlpB SBO_2494 lipoprotein-34chromosome CDS2487875 1038 - 0.55106
nlpC SBO_1420 lipoproteinchromosome CDS1395560 465 + 0.492473
nlpD SBO_2778 lipoproteinchromosome CDS2784526 1092 + 0.525641
ompA SBO_2274 outer membrane protein 3achromosome CDS2260261 1047 + 0.531996
ompC SBO_2092 outer membrane protein 1b (Ib;c)chromosome CDS2072853 1122 + 0.503565
ompF SBO_2220 outer membrane protein 1achromosome CDS2204064 1089 - 0.475666
ompX SBO_0705 outer membrane protein Xchromosome CDS720125 516 + 0.513566
pal SBO_0600 peptidoglycan-associated lipoproteinchromosome CDS623636 522 + 0.51341
pbpC SBO_2543 putative peptidoglycan enzymechromosome CDS2540735 2313 - 0.56377
pbpG SBO_1010 penicillin-binding protein 7chromosome CDS1027857 942 + 0.503185
phoE SBO_0247 outer membrane pore protein Echromosome CDS262510 1056 - 0.447917
pldA SBO_3833 outer membrane phospholipase Achromosome CDS3854990 870 + 0.509195
prc SBO_1245 carboxy-terminal protease for penicillin-binding protein 3chromosome CDS1239424 2049 - 0.505612
rfaC SBO_3626 heptosyl transferase Ichromosome CDS3643542 981 + 0.508665
rfaD SBO_3624 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS3641550 933 + 0.513398
rfaF SBO_3625 ADP-heptose--lps heptosyltransferase IIchromosome CDS3642492 1047 + 0.539637
rfaG SBO_3633 glucosyltransferase Ichromosome CDS3651546 1125 - 0.480889
rfbA SBO_0866 glucose-1-phosphate thymidylyltransferasechromosome CDS880748 879 - 0.434585
rfbB SBO_0868 dTDP-glucose 4,6 dehydratasechromosome CDS882583 1086 - 0.430018
rfbC SBO_0865 dTDP-4-dehydrorhamnose 3,5-epimerasechromosome CDS880174 570 - 0.389474
rfbD SBO_0867 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS881684 900 - 0.472222
rfe SBO_3795 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS3817402 1104 + 0.494565
rffG SBO_3799 dTDP-glucose 4,6-dehydratasechromosome CDS3822008 1068 + 0.535581
rffH SBO_3800 glucose-1-phosphate thymidylyltransferasechromosome CDS3823094 882 + 0.549887
rhsA SBO_3593 RhsAchromosome CDS3603085 4230 + 0.59078
rhsC SBO_0563 rhsC protein in rhs elementchromosome CDS580457 4152 + 0.596098
rlpA SBO_0497 RlpAchromosome CDS514514 1089 - 0.576676
rlpB SBO_0505 RlpBchromosome CDS522016 582 - 0.522337
slp SBO_3505 Slpchromosome CDS3499494 600 + 0.445
slt SBO_4455 soluble lytic murein transglycosylasechromosome CDS4508930 1965 + 0.543003
slyB SBO_1493 putative outer membrane proteinchromosome CDS1470469 468 - 0.512821
spr SBO_2149 putative lipoproteinchromosome CDS2124471 567 - 0.465608
tolA SBO_0598 TolAchromosome CDS620935 1242 + 0.522544
tolC SBO_2893 TolCchromosome CDS2896090 1488 + 0.514785
tonB SBO_1813 TonBchromosome CDS1791187 729 - 0.545953
tsx SBO_0305 Tsxchromosome CDS320100 885 - 0.501695
ugd SBO_0857 UDP-glucose 6-dehydrogenasechromosome CDS870640 1167 - 0.425021
vacJ SBO_2388 lipoprotein precursorchromosome CDS2378138 756 - 0.522487
waaI SBO_3631 UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferasechromosome CDS3649724 1017 - 0.382498
waaJ SBO_3630 lipopolysaccharide 1,2-glucosyltransferasechromosome CDS3648712 996 - 0.353414
waaL SBO_3627 lipid A-core surface polymer ligasechromosome CDS3644592 1254 - 0.331738
waaQ SBO_3634 lipopolysaccharide core biosynthesis proteinchromosome CDS3652667 1059 - 0.468366
waaW SBO_3628 UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferasechromosome CDS3646959 1026 - 0.367446
wbdF SBO_0863 putative glycosyl transferasechromosome CDS878236 1113 - 0.269542
wbdG SBO_0861 putative glycosyl transferasechromosome CDS875931 1011 - 0.298714
wbdS SBO_0859 putative glycosyl transferasechromosome CDS873587 1077 - 0.317549
wcaA SBO_0886 putative regulatorchromosome CDS903349 840 - 0.509524
wcaC SBO_0884 putative glycosyl transferasechromosome CDS901644 1218 - 0.536125
wcaE SBO_0882 putative colanic acid biosynthesis glycosyl transferasechromosome CDS899695 747 - 0.455154
wcaG SBO_0879 putative nucleotide di-P-sugar epimerasechromosome CDS897016 966 - 0.562112
wcaJ SBO_0874 putative colanic acid biosynthsis UDP-glucose lipid carrier transferasechromosome CDS890863 1395 - 0.536201
wcaL SBO_0871 putative colanic acid biosynthesis glycosyl transferasechromosome CDS886514 1221 - 0.542179
wecB SBO_3797 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS3819664 1086 + 0.518416
wecC SBO_3798 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS3820746 1263 + 0.539192
wecE SBO_3802 putative regulatorchromosome CDS3824632 1131 + 0.542882
wecG SBO_3806 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3829442 741 + 0.535762
wza SBO_0889 putative polysaccharide export proteinchromosome CDS906980 1140 - 0.530702
wzy SBO_0860 O-antigen polymerasechromosome CDS874635 1293 - 0.280742
wzzB SBO_0853 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS866871 1035 - 0.4657
wzzE SBO_3796 putative transport proteinchromosome CDS3818514 1050 + 0.527619
yabC SBO_0070 putative apolipoproteinchromosome CDS78097 942 + 0.552017
yaeF SBO_0182 conserved hypothetical proteinchromosome CDS202163 618 - 0.491909
yaeL SBO_0164 conserved hypothetical proteinchromosome CDS182563 1353 + 0.506282
yaeT SBO_0165 conserved hypothetical proteinchromosome CDS183945 2433 + 0.504727
yaiU SBO_0269 putative flagellin structural proteinchromosome CDS282183 1407 + 0.496091
yajG SBO_0328 putative polymerase/proteinasechromosome CDS342436 681 - 0.503671
ybdG SBO_0438 putative transportchromosome CDS453244 1248 - 0.478365
ybiO SBO_0698 putative transport proteinchromosome CDS711544 2163 - 0.52797
ybjT SBO_0802 putative dTDP-glucose enzymechromosome CDS809657 1431 - 0.547869
ycaH SBO_2203 putative enzymechromosome CDS2184321 987 + 0.546099
yccC SBO_2249 conserved hypothetical proteinchromosome CDS2236105 2181 + 0.504814
yccZ SBO_2247 putative function in exopolysaccharide productionchromosome CDS2234512 1140 + 0.509649
ycfN SBO_1955 putative beta-glucosidasechromosome CDS1930472 825 - 0.529697
ycfU SBO_1945 conserved hypothetical proteinchromosome CDS1917912 1200 - 0.538333
ycfW SBO_1943 putative kinasechromosome CDS1915974 1245 - 0.515663
ycgR SBO_1878 conserved hypothetical proteinchromosome CDS1860974 735 + 0.507483
yciD SBO_1809 putative outer membrane proteinchromosome CDS1788337 639 - 0.499218
ycjG SBO_1745 putative muconate cycloisomerase Ichromosome CDS1724190 915 - 0.546448
ydhO SBO_1476 putative lipoproteinchromosome CDS1453732 816 - 0.476716
yeaF SBO_1311 conserved hypothetical proteinchromosome CDS1296811 747 + 0.52075
yeaV SBO_1287 putative transport proteinchromosome CDS1276954 1446 - 0.507607
yebA SBO_1173 conserved hypothetical proteinchromosome CDS1172184 1323 - 0.529101
yegX SBO_0923 conserved hypothetical proteinchromosome CDS953029 828 - 0.475845
yehZ SBO_1013 putative transport system permease proteinchromosome CDS1033297 918 + 0.541394
yfhD SBO_2586 putative periplasmic binding transport proteinchromosome CDS2593018 1419 + 0.503171
yfiB SBO_2741 putative outer membrane proteinchromosome CDS2752506 483 + 0.511387
ygcX SBO_2668 putative glucarate dehydratasechromosome CDS2674758 1341 - 0.534676
ygcY SBO_2669 putative glucarate dehydratasechromosome CDS2676119 1341 - 0.537658
ygeA SBO_2732 putative resistance proteinschromosome CDS2744996 693 - 0.503608
yggB SBO_3069 putative transport proteinchromosome CDS3066872 861 + 0.497096
yhfN SBO_3359 putative transport proteinchromosome CDS3343293 1044 + 0.543103
yhiI SBO_3482 putative membrane proteinchromosome CDS3473046 1068 - 0.590824
yhiU SBO_3512 putative membrane proteinchromosome CDS3504798 1158 + 0.546632
yhjG SBO_3523 conserved hypothetical proteinchromosome CDS3521908 2076 - 0.531792
yhjO SBO_3532 putative cellulose synthasechromosome CDS3538235 2661 - 0.553176
yiaD SBO_3554 putative outer membrane proteinchromosome CDS3563421 660 + 0.581818
yjeP SBO_4298 putative periplasmic binding proteinchromosome CDS4345142 3324 + 0.555656
yjfG SBO_4213 putative ligasechromosome CDS4265226 1374 - 0.55313
ylcD SBO_0435 putative resistance proteinchromosome CDS447416 1128 + 0.560284
yohK SBO_0999 putative seritonin transporterchromosome CDS1018967 696 - 0.533046
yqhH SBO_3008 conserved hypothetical proteinchromosome CDS3009589 258 + 0.484496
yraR SBO_3230 conserved hypothetical proteinchromosome CDS3236187 681 + 0.550661
ytfB SBO_4239 conserved hypothetical proteinchromosome CDS4295204 675 + 0.554074
ytfG SBO_4231 putative oxidoreductasechromosome CDS4289155 861 + 0.538908
ytfM SBO_4223 conserved hypothetical proteinchromosome CDS4279081 1734 - 0.532872