Gene list
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COG category: Cell wall/membrane biogenesis
Organism: Shigella dysenteriae Sd197, Sd197
Number of genes found: 191
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Shigella dysenteriae Sd197, Sd197 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SDY_0429 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 416946 | 621 | - | 0.555556 |
NA | SDY_2453 | conserved hypothetical protein | RecName: Full=Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; EC=2.4.2.43; AltName: Full=4-amino-4-deoxy-L-arabinose lipid A transferase; AltName: Full=Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; AltName: Full=Undecaprenyl phosphate-alpha-L-Ara4N transferase; | chromosome | CDS | 2253854 | 1653 | + | 0.508772 |
NA | SDY_0241 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 240296 | 606 | - | 0.349835 |
NA | SDY_2383 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 2186320 | 1077 | - | 0.532962 |
NA | SDY_3089 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2864313 | 978 | - | 0.529652 |
NA | SDY_1749 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1593031 | 435 | + | 0.48046 |
NA | SDY_0808 | putative membrane protein | RecName: Full=UPF0194 membrane protein YbhG; Flags: Precursor; | chromosome | CDS | 754480 | 999 | + | 0.572573 |
NA | SDY_2395 | putative nucleotide di-P-sugar epimerase or dehydratase | SubName: Full=Putative nucleotide di-P-sugar epimerase or dehydratase; | chromosome | CDS | 2200213 | 1050 | + | 0.539048 |
NA | SDY_2450 | putative sugar transferase | RecName: Full=Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; EC=2.4.2.53; AltName: Full=Undecaprenyl-phosphate Ara4FN transferase; Short=Ara4FN transferase; | chromosome | CDS | 2250018 | 777 | + | 0.50193 |
NA | SDY_1725 | putative resistance protein | SubName: Full=Putative resistance protein; | chromosome | CDS | 1574909 | 519 | + | 0.531792 |
NA | SDY_1406 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1298889 | 477 | + | 0.457023 |
NA | SDY_2649 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2439779 | 1068 | - | 0.539326 |
NA | SDY_2223 | putative enzyme of sugar metabolism | SubName: Full=Putative enzyme of sugar metabolism; | chromosome | CDS | 2027230 | 825 | + | 0.518788 |
NA | SDY_1710 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1563061 | 582 | - | 0.536082 |
NA | SDY_3034 | putative amidase | SubName: Full=Putative amidase; | chromosome | CDS | 2804385 | 1344 | - | 0.528274 |
NA | SDY_0428 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 416643 | 294 | - | 0.465986 |
NA | SDY_1670 | unknown protein encoded by bacteriophage BP-933W | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1531311 | 1266 | - | 0.509479 |
NA | SDY_0620 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 583992 | 672 | + | 0.50744 |
NA | SDY_0416 | putative membrane spanning export protein | SubName: Full=Putative membrane spanning export protein; | chromosome | CDS | 397600 | 1176 | - | 0.566327 |
NA | SDY_0498 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 484134 | 684 | + | 0.502924 |
NA | SDY_3235 | putative kinase | RecName: Full=Bifunctional protein HldE; Includes: RecName: Full=D-beta-D-heptose 7-phosphate kinase; EC=2.7.1.167; AltName: Full=D-beta-D-heptose 7-phosphotransferase; AltName: Full=D-glycero-beta-D-manno-heptose-7-phosphate kinase; Includes: RecName: Full=D-beta-D-heptose 1-phosphate adenylyltransferase; EC=2.7.7.70; AltName: Full=D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase; | chromosome | CDS | 2995436 | 1434 | - | 0.55788 |
NA | SDY_1663 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1525712 | 309 | + | 0.449838 |
NA | SDY_1374 | putative outer membrane channel protein | SubName: Full=Putative outer membrane channel protein; | chromosome | CDS | 1270947 | 828 | + | 0.536232 |
NA | SDY_2449 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2249487 | 528 | + | 0.517045 |
NA | SDY_2276 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2071278 | 309 | - | 0.459547 |
NA | SDY_1373 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1270401 | 498 | + | 0.546185 |
NA | SDY_1410 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1303129 | 1032 | - | 0.435078 |
acrA | SDY_0456 | acridine efflux pump | SubName: Full=Acridine efflux pump; | chromosome | CDS | 447726 | 1194 | + | 0.535176 |
aefA | SDY_0454 | putative alpha helix protein | SubName: Full=Putative alpha helix protein; | chromosome | CDS | 443447 | 3363 | - | 0.517098 |
alr | SDY_4521 | alanine racemase 1 | RecName: Full=Alanine racemase; EC=5.1.1.1; | chromosome | CDS | 4229531 | 1080 | - | 0.553704 |
amiA | SDY_2633 | N-acetylmuramoyl-l-alanine amidase I | SubName: Full=N-acetylmuramoyl-l-alanine amidase I; | chromosome | CDS | 2425444 | 870 | + | 0.501149 |
amiB | SDY_4420 | N-acetylmuramoyl-l-alanine amidase II | SubName: Full=N-acetylmuramoyl-l-alanine amidase II; | chromosome | CDS | 4136425 | 1338 | - | 0.550822 |
asmA | SDY_2198 | suppressor of ompF assembly mutants | SubName: Full=Suppressor of ompF assembly mutants; | chromosome | CDS | 1999870 | 1854 | + | 0.526429 |
blc | SDY_4393 | outer membrane lipoprotein | SubName: Full=Outer membrane lipoprotein; | chromosome | CDS | 4111129 | 534 | - | 0.52809 |
caiT | SDY_0062 | probable carnitine transporter | RecName: Full=L-carnitine/gamma-butyrobetaine antiporter; | chromosome | CDS | 59170 | 1515 | - | 0.520792 |
cfa | SDY_1887 | cyclopropane fatty acyl phospholipid synthase | SubName: Full=Cyclopropane fatty acyl phospholipid synthase; | chromosome | CDS | 1721699 | 1149 | + | 0.476066 |
csgG | SDY_0999 | curli production assembly/transport component | SubName: Full=Curli production assembly/transport component; | chromosome | CDS | 947347 | 834 | + | 0.505995 |
cutF | SDY_0211 | copper homeostasis protein | SubName: Full=Copper homeostasis protein; | chromosome | CDS | 216298 | 711 | + | 0.524613 |
dacA | SDY_0554 | D-alanyl-D-alanine carboxypeptidase, fraction A | SubName: Full=D-alanyl-D-alanine carboxypeptidase, fraction A; | chromosome | CDS | 535553 | 1212 | - | 0.499175 |
dacB | SDY_3363 | D-alanyl-D-alanine carboxypeptidase, fraction B | SubName: Full=D-alanyl-D-alanine carboxypeptidase, fraction B; | chromosome | CDS | 3120368 | 1434 | + | 0.532078 |
dacC | SDY_0841 | D-alanyl-D-alanine carboxypeptidase | SubName: Full=D-alanyl-D-alanine carboxypeptidase; | chromosome | CDS | 784024 | 1203 | + | 0.516209 |
dacD | SDY_2233 | penicillin binding protein 6b | SubName: Full=Penicillin binding protein 6b; | chromosome | CDS | 2035938 | 1137 | + | 0.493404 |
dapA | SDY_2667 | dihydrodipicolinate synthase | RecName: Full=4-hydroxy-tetrahydrodipicolinate synthase; Short=HTPA synthase; EC=4.3.3.7; | chromosome | CDS | 2458471 | 879 | - | 0.514221 |
ddg | SDY_2576 | putative heat shock protein | SubName: Full=Putative heat shock protein; | chromosome | CDS | 2372805 | 987 | + | 0.506586 |
ddlA | SDY_0365 | D-alanine-D-alanine ligase A | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 352680 | 1095 | + | 0.514155 |
ddlB | SDY_0122 | D-alanine-D-alanine ligase B | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 122887 | 921 | + | 0.511401 |
dgkA | SDY_4532 | diacylglycerol kinase | SubName: Full=Diacylglycerol kinase; | chromosome | CDS | 4239176 | 369 | - | 0.523035 |
dniR | SDY_0230 | transcriptional regulator for nitrite reductase | SubName: Full=Transcriptional regulator for nitrite reductase; | chromosome | CDS | 233762 | 1359 | - | 0.520235 |
fepE | SDY_0518 | ferric enterobactin transport | SubName: Full=Ferric enterobactin transport; | chromosome | CDS | 503562 | 1134 | + | 0.443563 |
flgJ | SDY_2070 | FlgJ | SubName: Full=FlgJ; | chromosome | CDS | 1882427 | 942 | - | 0.542463 |
ftsI | SDY_0114 | penicillin-binding protein 3 | SubName: Full=Penicillin-binding protein 3; | chromosome | CDS | 112067 | 1767 | + | 0.537068 |
ftsQ | SDY_0123 | cell division protein | RecName: Full=Cell division protein FtsQ; | chromosome | CDS | 123809 | 831 | + | 0.533093 |
galE | SDY_0706 | UDP-galactose-4-epimerase | SubName: Full=UDP-galactose-4-epimerase; | chromosome | CDS | 663597 | 1017 | - | 0.542773 |
galF | SDY_2203 | probable UDP-gal transferase | SubName: Full=Probable UDP-gal transferase; | chromosome | CDS | 2005517 | 894 | + | 0.514541 |
galU | SDY_1288 | glucose-1-phosphate uridylyltransferase | SubName: Full=Glucose-1-phosphate uridylyltransferase; | chromosome | CDS | 1193243 | 909 | + | 0.466447 |
gidB | SDY_4008 | GldB | RecName: Full=Ribosomal RNA small subunit methyltransferase G; EC=2.1.1.170; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase; | chromosome | CDS | 3742914 | 624 | + | 0.487179 |
glmS | SDY_4019 | L-glutamine:D-fructose-6-phosphateaminotransfera se | RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; | chromosome | CDS | 3752925 | 1830 | + | 0.534426 |
glmU | SDY_4018 | N-acetyl glucosamine-1-phosphate uridyltransferase | RecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; | chromosome | CDS | 3751393 | 1371 | + | 0.528082 |
hemM | SDY_1258 | 5-aminolevulinate synthesis enzyme, main pathway, possibly glutamyl-tRNA dehydrogenase | RecName: Full=Outer-membrane lipoprotein LolB; Flags: Precursor; | chromosome | CDS | 1164968 | 624 | - | 0.511218 |
hlpA | SDY_0194 | histone-like protein | RecName: Full=Chaperone protein Skp; Flags: Precursor; | chromosome | CDS | 200744 | 486 | + | 0.502058 |
htrB | SDY_2293 | heat shock protein | SubName: Full=Heat shock protein; | chromosome | CDS | 2082672 | 921 | + | 0.528773 |
imp | SDY_0079 | organic solvent tolerance | RecName: Full=LPS-assembly protein LptD; Flags: Precursor; | chromosome | CDS | 73877 | 2355 | - | 0.5138 |
kdsA | SDY_1264 | 2-dehydro-3-deoxyphosphooctulonate aldolase | RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; EC=2.5.1.55; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase; | chromosome | CDS | 1170256 | 855 | + | 0.51462 |
kdsB | SDY_2340 | CTP:CMP-3-deoxy-D-manno-octulosonate transferase | RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; EC=2.7.7.38; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase; | chromosome | CDS | 2131607 | 747 | - | 0.532798 |
kdtA | SDY_4063 | 3-deoxy-D-manno-octulosonic-acid transferase | SubName: Full=3-deoxy-D-manno-octulosonic-acid transferase; | chromosome | CDS | 3800809 | 1278 | + | 0.537559 |
lepA | SDY_2810 | GTP-binding elongation factor | RecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; | chromosome | CDS | 2600166 | 1800 | - | 0.535556 |
lgt | SDY_3045 | phosphatidylglycerol-prolipoprotein diacylglyceryl transferase | RecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; | chromosome | CDS | 2821791 | 876 | - | 0.528539 |
lnt | SDY_0593 | apolipoprotein N-acyltransferase | RecName: Full=Apolipoprotein N-acyltransferase; Short=ALP N-acyltransferase; EC=2.3.1.-; | chromosome | CDS | 562829 | 1539 | - | 0.549058 |
lolA | SDY_2370 | periplasmic protein effects translocation of lipoproteins from inner membrane to outer | RecName: Full=Outer-membrane lipoprotein carrier protein; Flags: Precursor; | chromosome | CDS | 2168570 | 615 | - | 0.505691 |
lpp | SDY_1908 | murein lipoprotein | SubName: Full=Murein lipoprotein; | chromosome | CDS | 1738394 | 237 | + | 0.506329 |
lpxA | SDY_0197 | UDP-N-acetylglucosamine acetyltransferase | RecName: Full=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Short=UDP-N-acetylglucosamine acyltransferase; EC=2.3.1.129; | chromosome | CDS | 202822 | 789 | + | 0.533587 |
lpxB | SDY_0198 | tetraacyldisaccharide-1-P | RecName: Full=Lipid-A-disaccharide synthase; EC=2.4.1.182; | chromosome | CDS | 203610 | 1149 | + | 0.538729 |
lpxC | SDY_0126 | UDP-3-O-acyl N-acetylglucosamine deacetylase | RecName: Full=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; EC=3.5.1.-; AltName: Full=UDP-3-O-acyl-GlcNAc deacetylase; | chromosome | CDS | 127211 | 918 | + | 0.510893 |
lpxD | SDY_0195 | UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferase | RecName: Full=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase; Short=UDP-3-O-(3-OHC14)-GlcN N-acyltransferase; EC=2.3.1.191; | chromosome | CDS | 201233 | 1026 | + | 0.528265 |
lspA | SDY_0049 | prolipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 43996 | 495 | + | 0.529293 |
lytB | SDY_0051 | control of stringent response | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome | CDS | 45029 | 951 | + | 0.548896 |
mdoB | SDY_4613 | phosphoglycerol transferase I | SubName: Full=Phosphoglycerol transferase I; | chromosome | CDS | 4322255 | 2253 | - | 0.522858 |
mdoH | SDY_2301 | membrane glycosyltransferase | RecName: Full=Glucans biosynthesis glucosyltransferase H; EC=2.4.1.-; | chromosome | CDS | 2087765 | 2544 | - | 0.545597 |
mepA | SDY_2527 | murein DD-endopeptidase, penicillin-insensitive | RecName: Full=Penicillin-insensitive murein endopeptidase; EC=3.4.24.-; AltName: Full=D-alanyl-D-alanine-endopeptidase; Short=DD-endopeptidase; Flags: Precursor; | chromosome | CDS | 2325652 | 825 | - | 0.555152 |
mltA | SDY_3031 | membrane-bound lytic murein transglycosylase A | SubName: Full=Membrane-bound lytic murein transglycosylase A; | chromosome | CDS | 2802819 | 1098 | - | 0.527322 |
mltB | SDY_2897 | membrane-bound lytic murein transglycosylase B | SubName: Full=Membrane-bound lytic murein transglycosylase B; | chromosome | CDS | 2678438 | 1086 | - | 0.547882 |
mltC | SDY_3109 | membrane-bound lytic murein transglycosylase C | RecName: Full=Membrane-bound lytic murein transglycosylase C; EC=4.2.2.n1; AltName: Full=Murein lyase C; Flags: Precursor; | chromosome | CDS | 2884159 | 1083 | - | 0.512465 |
mltE | SDY_1231 | murein transglycosylase E | RecName: Full=Endo-type membrane-bound lytic murein transglycosylase A; EC=4.2.2.n2; AltName: Full=Peptidoglycan lytic endotransglycosylase; Flags: Precursor; | chromosome | CDS | 1139693 | 726 | + | 0.50551 |
mraY | SDY_0117 | possible phospho-N-acetylmuramoyl-pentapeptide transferase | RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; | chromosome | CDS | 116656 | 1083 | + | 0.530009 |
mrcA | SDY_3682 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 3414737 | 2577 | - | 0.554133 |
mrcB | SDY_0165 | peptidoglycan synthetase | SubName: Full=Peptidoglycan synthetase; | chromosome | CDS | 165059 | 2535 | + | 0.549112 |
mrdA | SDY_0557 | penicillin-binding protein 2 | SubName: Full=Penicillin-binding protein 2; | chromosome | CDS | 539118 | 1902 | - | 0.526814 |
mreC | SDY_3425 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3182614 | 1104 | - | 0.557971 |
mreD | SDY_3424 | rod shape-determining protein | SubName: Full=Rod shape-determining protein; | chromosome | CDS | 3182126 | 489 | - | 0.509202 |
msbB | SDY_1142 | suppressor of htrB | SubName: Full=Suppressor of htrB; | chromosome | CDS | 1062219 | 972 | - | 0.515432 |
mtgA | SDY_3389 | putative peptidoglycan enzyme | RecName: Full=Monofunctional biosynthetic peptidoglycan transglycosylase; Short=Monofunctional TGase; EC=2.4.2.-; | chromosome | CDS | 3140330 | 729 | - | 0.51989 |
murA | SDY_3370 | UDP-N-glucosamine 1-carboxyvinyltransferase | RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT; | chromosome | CDS | 3126493 | 1260 | - | 0.530952 |
murB | SDY_3756 | UDP-N-acetylenolpyruvoylglucosamine reductase | RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; | chromosome | CDS | 3485583 | 1029 | - | 0.466472 |
murC | SDY_0121 | UDP-N-acetyl-muramate:alanine ligase | RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; EC=6.3.2.8; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase; | chromosome | CDS | 121419 | 1476 | + | 0.545393 |
murD | SDY_0118 | UDP-N-acetylmuramoylalanine-D-glutamate ligase | RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; | chromosome | CDS | 117741 | 1317 | + | 0.545938 |
murE | SDY_0115 | meso-diaminopimelate-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; EC=6.3.2.13; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; | chromosome | CDS | 113820 | 1488 | + | 0.570565 |
murF | SDY_0116 | D-alanine:D-alanine-adding enzyme | RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; EC=6.3.2.10; | chromosome | CDS | 115304 | 1359 | + | 0.548933 |
murG | SDY_0120 | UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; | chromosome | CDS | 120298 | 1068 | + | 0.561798 |
murI | SDY_3761 | glutamate racemase | RecName: Full=Glutamate racemase; EC=5.1.1.3; | chromosome | CDS | 3492121 | 870 | - | 0.513793 |
nanA | SDY_3400 | N-acetylneuraminate lyase | RecName: Full=N-acetylneuraminate lyase; EC=4.1.3.3; AltName: Full=N-acetylneuraminate pyruvate-lyase; AltName: Full=N-acetylneuraminic acid aldolase; AltName: Full=Sialate lyase; AltName: Full=Sialic acid aldolase; AltName: Full=Sialic acid lyase; | chromosome | CDS | 3156904 | 894 | - | 0.521253 |
nlpB | SDY_2666 | lipoprotein-34 | RecName: Full=Outer membrane protein assembly factor BamC; Flags: Precursor; | chromosome | CDS | 2457420 | 1038 | - | 0.55106 |
nlpC | SDY_1803 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 1641335 | 465 | - | 0.492473 |
nlpD | SDY_2941 | lipoprotein | SubName: Full=Lipoprotein; | chromosome | CDS | 2720729 | 1140 | - | 0.522807 |
ompA | SDY_0930 | outer membrane protein 3a | SubName: Full=Outer membrane protein 3a; | chromosome | CDS | 880379 | 1053 | - | 0.540361 |
ompC | SDY_0861 | outer membrane protein 1b | SubName: Full=Outer membrane protein 1b; | chromosome | CDS | 810258 | 1128 | + | 0.503546 |
ompF | SDY_2328 | outer membrane protein 1a (Ia;b;F) | SubName: Full=Outer membrane protein 1a (IabF); | chromosome | CDS | 2115680 | 1089 | + | 0.476584 |
ompX | SDY_0781 | outer membrane protein X | SubName: Full=Outer membrane protein X; | chromosome | CDS | 728975 | 516 | - | 0.513566 |
pal | SDY_0689 | peptidoglycan-associated lipoprotein | SubName: Full=Peptidoglycan-associated lipoprotein; | chromosome | CDS | 651695 | 522 | + | 0.515326 |
pbpG | SDY_2154 | penicillin-binding protein 7 | SubName: Full=Penicillin-binding protein 7; | chromosome | CDS | 1951742 | 942 | + | 0.509554 |
pldA | SDY_3922 | outer membrane phospholipase A | SubName: Full=Outer membrane phospholipase A; | chromosome | CDS | 3654541 | 870 | - | 0.513793 |
prc | SDY_1978 | carboxy-terminal protease for penicillin-binding protein 3 | SubName: Full=Carboxy-terminal protease for penicillin-binding protein 3; | chromosome | CDS | 1797264 | 2049 | - | 0.500244 |
rfaC | SDY_4053 | heptosyl transferase I | SubName: Full=Heptosyl transferase I; | chromosome | CDS | 3790527 | 960 | + | 0.511458 |
rfaD | SDY_4051 | ADP-L-glycero-D-mannoheptose-6-epimerase | RecName: Full=ADP-L-glycero-D-manno-heptose-6-epimerase; EC=5.1.3.20; AltName: Full=ADP-L-glycero-beta-D-manno-heptose-6-epimerase; Short=ADP-glyceromanno-heptose 6-epimerase; Short=ADP-hep 6-epimerase; Short=AGME; | chromosome | CDS | 3788535 | 933 | + | 0.50911 |
rfaF | SDY_4052 | ADP-heptose--lps heptosyltransferase II | SubName: Full=ADP-heptose--lps heptosyltransferase II; | chromosome | CDS | 3789477 | 1047 | + | 0.536772 |
rfaG | SDY_4061 | glucosyltransferase I | SubName: Full=Glucosyltransferase I; | chromosome | CDS | 3798217 | 1125 | - | 0.482667 |
rfaI | SDY_4059 | Lipopolysaccharide 1,3-galactosyltransferase | SubName: Full=Lipopolysaccharide 1,3-galactosyltransferase; | chromosome | CDS | 3796395 | 1017 | - | 0.380531 |
rfaJ | SDY_4058 | Lipopolysaccharide 1,2-glucosyltransferase | SubName: Full=Lipopolysaccharide 1,2-glucosyltransferase; | chromosome | CDS | 3795383 | 996 | - | 0.350402 |
rfbA | SDY_2206 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 2008824 | 879 | + | 0.432309 |
rfbB | SDY_2204 | dTDP-glucose 4,6 dehydratase | RecName: Full=dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; | chromosome | CDS | 2006782 | 1086 | + | 0.437385 |
rfbC | SDY_2207 | dTDP-4-dehydrorhamnose 3,5-epimerase | SubName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; | chromosome | CDS | 2009705 | 558 | + | 0.353047 |
rfbD | SDY_2205 | dTDP-6-deoxy-L-mannose-dehydrogenase | SubName: Full=dTDP-6-deoxy-L-mannose-dehydrogenase; | chromosome | CDS | 2007867 | 900 | + | 0.471111 |
rfe | SDY_3964 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase | SubName: Full=UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; | chromosome | CDS | 3694133 | 1104 | - | 0.492754 |
rffH | SDY_3959 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 3688755 | 882 | - | 0.548753 |
rhsA | SDY_4210 | rhsA protein in rhs element | SubName: Full=RhsA protein in rhs element; SubName: Full=RhsB protein in rhs element; | chromosome | CDS | 3937859 | 3642 | - | 0.613125 |
rhsB | SDY_3800 | rhsB protein in rhs element | SubName: Full=RhsA protein in rhs element; SubName: Full=RhsB protein in rhs element; | chromosome | CDS | 3535728 | 3642 | - | 0.613125 |
rhsC | SDY_0636 | rhsC protein in rhs element | SubName: Full=RhsC protein in rhs element; | chromosome | CDS | 599034 | 3264 | + | 0.625919 |
rlpA | SDY_0555 | minor lipoprotein | SubName: Full=Minor lipoprotein; | chromosome | CDS | 536904 | 1089 | - | 0.575758 |
rlpB | SDY_0563 | minor lipoprotein | RecName: Full=LPS-assembly lipoprotein LptE; Flags: Precursor; | chromosome | CDS | 544415 | 582 | - | 0.517182 |
shuY | SDY_3549 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3283376 | 624 | - | 0.565705 |
slp | SDY_3557 | outer membrane protein induced after carbon starvation | SubName: Full=Outer membrane protein induced after carbon starvation; | chromosome | CDS | 3291263 | 600 | - | 0.443333 |
slt | SDY_4653 | soluble lytic murein transglycosylase | SubName: Full=Soluble lytic murein transglycosylase; | chromosome | CDS | 4358391 | 1965 | + | 0.542494 |
slyB | SDY_1864 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1699377 | 468 | + | 0.50641 |
spr | SDY_0904 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 853766 | 567 | - | 0.467372 |
tolA | SDY_0687 | membrane spanning protein | SubName: Full=Membrane spanning protein; | chromosome | CDS | 648970 | 1266 | + | 0.522117 |
tolC | SDY_3205 | outer membrane channel | SubName: Full=Outer membrane channel; | chromosome | CDS | 2967943 | 1488 | - | 0.513441 |
tonB | SDY_1316 | TonB | SubName: Full=TonB; | chromosome | CDS | 1220191 | 720 | + | 0.545833 |
tsx | SDY_0323 | nucleoside channel | SubName: Full=Nucleoside channel; | chromosome | CDS | 311896 | 885 | + | 0.505085 |
ugd | SDY_2213 | UDP-glucose 6-dehydrogenase | SubName: Full=UDP-glucose 6-dehydrogenase; | chromosome | CDS | 2017207 | 1167 | + | 0.43102 |
vacJ | SDY_2550 | lipoprotein precursor | SubName: Full=Lipoprotein; | chromosome | CDS | 2346527 | 756 | - | 0.517196 |
waaL | SDY_4054 | lipid A-core:surface polymer ligase WaaL | SubName: Full=Lipid A-core:surface polymer ligase WaaL; | chromosome | CDS | 3791534 | 1254 | - | 0.322967 |
waaQ | SDY_4062 | lipopolysaccharide core biosynthesis protein | SubName: Full=Lipopolysaccharide core biosynthesis protein; | chromosome | CDS | 3799338 | 1059 | - | 0.469311 |
waaW | SDY_4056 | UDP-galactose:(galactosyl) LPS alpha1,2-galactosyltransferase | SubName: Full=UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase; | chromosome | CDS | 3793627 | 1029 | - | 0.372206 |
waaX | SDY_4055 | putative beta1,4-galactosyltransferase WaaX | SubName: Full=Putative beta1,4-galactosyltransferase WaaX; | chromosome | CDS | 3792822 | 774 | - | 0.301034 |
wecB | SDY_3962 | UDP-N-acetyl glucosamine-2-epimerase | RecName: Full=UDP-N-acetylglucosamine 2-epimerase; EC=5.1.3.14; | chromosome | CDS | 3691889 | 1173 | - | 0.523444 |
wecC | SDY_3961 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase | SubName: Full=UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; | chromosome | CDS | 3690630 | 1263 | - | 0.539984 |
wecE | SDY_3957 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 3686968 | 1131 | - | 0.543767 |
wecG | SDY_3953 | probable UDP-N-acetyl-D-mannosaminuronic acid transferase | RecName: Full=UDP-N-acetyl-D-mannosaminuronic acid transferase; Short=UDP-ManNAcA transferase; EC=2.4.1.180; | chromosome | CDS | 3682548 | 741 | - | 0.534413 |
wzzB | SDY_2214 | regulator of length of O-antigen component of lipopolysaccharide chains | SubName: Full=Regulator of length of O-antigen component of lipopolysaccharide chains; | chromosome | CDS | 2018463 | 1035 | + | 0.455072 |
wzzE | SDY_3963 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3693075 | 1050 | - | 0.530476 |
yabC | SDY_0112 | putative apolipoprotein | RecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; | chromosome | CDS | 110748 | 942 | + | 0.548832 |
yaeF | SDY_0212 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 217152 | 825 | - | 0.492121 |
yaeL | SDY_0192 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 196808 | 1353 | + | 0.506282 |
yaeT | SDY_0193 | conserved hypothetical protein | RecName: Full=Outer membrane protein assembly factor BamA; Flags: Precursor; | chromosome | CDS | 198190 | 2433 | + | 0.50596 |
yafL | SDY_0253 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 250818 | 750 | + | 0.530667 |
yajG | SDY_0299 | putative polymerase/proteinase | SubName: Full=Putative polymerase/proteinase; | chromosome | CDS | 291977 | 681 | + | 0.497797 |
ybdG | SDY_0490 | putative transport | SubName: Full=Putative transport; | chromosome | CDS | 476873 | 1248 | - | 0.476763 |
ybjT | SDY_2394 | putative dTDP-glucose enzyme | SubName: Full=Putative dTDP-glucose enzyme; | chromosome | CDS | 2198720 | 1431 | + | 0.548567 |
ycaH | SDY_2343 | YcaH | RecName: Full=Tetraacyldisaccharide 4-kinase; EC=2.7.1.130; AltName: Full=Lipid A 4-kinase; | chromosome | CDS | 2133853 | 987 | - | 0.546099 |
yccC | SDY_0957 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 904685 | 2181 | - | 0.509399 |
yccZ | SDY_0959 | putative function in exopolysaccharide production | SubName: Full=Putative function in exopolysaccharide production; | chromosome | CDS | 907319 | 1140 | - | 0.510526 |
ycfN | SDY_2044 | putative beta-glucosidase | RecName: Full=Thiamine kinase; EC=2.7.1.89; | chromosome | CDS | 1855918 | 825 | - | 0.529697 |
ycfU | SDY_2034 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1843354 | 1200 | - | 0.540833 |
ycfW | SDY_2032 | putative kinase | SubName: Full=Putative kinase; | chromosome | CDS | 1841416 | 1245 | - | 0.514859 |
ycgR | SDY_1233 | conserved hypothetical protein | RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR; | chromosome | CDS | 1140420 | 735 | - | 0.510204 |
yciD | SDY_1320 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 1223122 | 639 | + | 0.499218 |
ycjG | SDY_1403 | putative muconate cycloisomerase I | SubName: Full=Putative muconate cycloisomerase I; EC=5.5.-.-; | chromosome | CDS | 1296141 | 1008 | + | 0.542659 |
ydhO | SDY_1881 | putative lipoprotein | SubName: Full=Putative lipoprotein; | chromosome | CDS | 1714725 | 828 | + | 0.477053 |
yeaF | SDY_1485 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1361643 | 747 | + | 0.522088 |
yebA | SDY_1143 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1063310 | 1260 | - | 0.526984 |
yegX | SDY_2275 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2070768 | 498 | - | 0.493976 |
yehZ | SDY_2157 | putative transport system permease protein | SubName: Full=Putative transport system permease protein; | chromosome | CDS | 1957182 | 918 | + | 0.527233 |
yejO | SDY_0889 | putative ATP-binding component of a transport system | SubName: Full=Putative ATP-binding component of a transport system; | chromosome | CDS | 835867 | 2055 | + | 0.492457 |
yfhD | SDY_2748 | putative periplasmic binding transport protein | RecName: Full=Membrane-bound lytic murein transglycosylase F; EC=4.2.2.n1; AltName: Full=Murein lyase F; Flags: Precursor; | chromosome | CDS | 2549820 | 1419 | + | 0.503876 |
yfiB | SDY_2779 | putative outer membrane protein | SubName: Full=Putative outer membrane protein; | chromosome | CDS | 2575249 | 414 | + | 0.492754 |
ygeA | SDY_3057 | putative resistance proteins | SubName: Full=Putative resistance proteins; | chromosome | CDS | 2836574 | 684 | - | 0.505848 |
yggB | SDY_3158 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 2925119 | 861 | + | 0.499419 |
yhiU | SDY_3538 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3274832 | 1155 | - | 0.543723 |
yhjG | SDY_4544 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4251031 | 2076 | - | 0.532274 |
yhjO | SDY_4553 | putative cellulose synthase | SubName: Full=Putative cellulose synthase; | chromosome | CDS | 4267359 | 2667 | - | 0.553431 |
yibD | SDY_4048 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 3784847 | 1005 | - | 0.457711 |
yiiX | SDY_3772 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3501678 | 609 | - | 0.518883 |
yjeP | SDY_4433 | putative periplasmic binding protein | SubName: Full=Putative periplasmic binding protein; | chromosome | CDS | 4146004 | 3324 | + | 0.557762 |
yjfG | SDY_4251 | putative ligase | SubName: Full=Putative ligase; | chromosome | CDS | 3980981 | 1374 | + | 0.552402 |
yohG | SDY_2150 | putative channel/filament proteins | SubName: Full=Putative channel/filament proteins; | chromosome | CDS | 1948211 | 921 | + | 0.537459 |
yohH | SDY_2149 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1947773 | 345 | + | 0.492754 |
yohK | SDY_2145 | putative seritonin transporter | SubName: Full=Putative seritonin transporter; | chromosome | CDS | 1944282 | 696 | - | 0.533046 |
yqhH | SDY_3222 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2987147 | 258 | - | 0.488372 |
yraR | SDY_3331 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3088923 | 681 | - | 0.553598 |
ytfB | SDY_4376 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4096641 | 675 | - | 0.554074 |
ytfG | SDY_4382 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 4101721 | 861 | - | 0.542393 |
ytfM | SDY_4457 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4169978 | 1734 | + | 0.533449 |