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2024-04-27 22:08:07

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Escherichia coli W3110, K-12

Number of genes found: 233

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
acrA multidrug efflux systemchromosome CDS483650 1194 - 0.538526
acrE cytoplasmic membrane lipoproteinchromosome CDS3413719 1158 + 0.520725
agaS tagatose-6-phosphate ketose/aldose isomerasechromosome CDS3281831 1155 + 0.566234
alr alanine racemase 1, PLP-binding, biosyntheticchromosome CDS4269372 1080 + 0.559259
amiA N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2557798 870 + 0.497701
amiB N-acetylmuramoyl-l-alanine amidase IIchromosome CDS4400745 1338 + 0.550822
amiC N-acetylmuramoyl-L-alanine amidasechromosome CDS2946413 1254 - 0.535088
arnT 4-amino-4-deoxy-L-arabinose transferasechromosome CDS2375578 1653 + 0.509982
asmA predicted assembly proteinchromosome CDS2141896 1854 - 0.525351
bcsA cellulose synthase, catalytic subunitchromosome CDS3945179 2619 + 0.553646
betT choline transporter of high affinitychromosome CDS328687 2034 + 0.553097
blc outer membrane lipoproteinchromosome CDS4381869 534 - 0.533708
caiT predicted transporterchromosome CDS40417 1515 - 0.518152
cfa cyclopropane fatty acyl phospholipid synthasechromosome CDS1743127 1149 + 0.479547
cld regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2099458 981 - 0.458716
csgG outer membrane lipoproteinchromosome CDS1101092 834 - 0.501199
cusB copper/silver efflux system, membrane fusion proteinchromosome CDS596702 1224 + 0.55719
cusC copper/silver efflux system, outer membrane componentchromosome CDS594823 1374 + 0.512373
dacA D-alanyl-D-alanine carboxypeptidasechromosome CDS663174 1212 - 0.493399
dacB D-alanyl-D-alanine carboxypeptidasechromosome CDS3328818 1434 + 0.531381
dacC D-alanyl-D-alanine carboxypeptidasechromosome CDS881149 1203 + 0.517041
dacD D-alanyl-D-alanine carboxypeptidasechromosome CDS2083518 1167 - 0.492716
dadX alanine racemase 2, PLP-bindingchromosome CDS1240456 1071 + 0.579832
dapA dihydrodipicolinate synthasechromosome CDS2597538 879 - 0.517634
ddg palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferasechromosome CDS2501091 921 + 0.514658
ddlA D-alanine-D-alanine ligase Achromosome CDS399053 1095 - 0.510502
ddlB D-Alanine:D-alanine ligasechromosome CDS102233 921 + 0.515744
ddpX D-Ala-D-Ala dipeptidase, Zn-dependentchromosome CDS1564209 582 - 0.52921
dgkA diacylglycerol kinasechromosome CDS4260227 369 + 0.517615
dgoD galactonate dehydratasechromosome CDS3767417 1149 + 0.528285
emtA lytic murein endotransglycosylase Echromosome CDS1244757 612 + 0.519608
envC protease with a role in cell divisionchromosome CDS3852318 1260 - 0.570635
fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase and GDP-4-dehydro-6-L-deoxygalactose reductasechromosome CDS2128362 966 - 0.564182
fepE regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS617477 1134 + 0.449735
flgJ muramidasechromosome CDS1138948 942 + 0.546709
frlB fructoselysine-6-P-deglycasechromosome CDS4138126 1023 - 0.544477
ftsI transpeptidase involved in septal peptidoglycan synthesischromosome CDS91413 1767 + 0.539898
ftsQ membrane anchored protein involved in growth of wall at septumchromosome CDS103155 831 + 0.533093
galE UDP-galactose-4-epimerasechromosome CDS791461 1017 - 0.543756
galF predicted subunit with GalUchromosome CDS2115571 894 - 0.516779
galU glucose-1-phosphate uridylyltransferasechromosome CDS1293034 909 + 0.469747
gidB methyltransferase, glucose-inhibited cell-division proteinchromosome CDS3713001 624 + 0.487179
glf UDP-galactopyranose mutase, FAD/NAD(P)-bindingchromosome CDS2109363 1104 - 0.355978
glmS L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS3723013 1830 + 0.535519
glmU fused N-acetyl glucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyl transferasechromosome CDS3721481 1371 + 0.526623
gmd GDP-D-mannose dehydratase, NAD(P)-bindingchromosome CDS2129330 1122 - 0.548128
gspA general secretory pathway component, crypticchromosome CDS4185018 1470 + 0.489796
gudD (D)-glucarate dehydratase 1chromosome CDS2916701 1341 - 0.532438
gudX predicted glucarate dehydratasechromosome CDS2918062 1341 - 0.539896
hlpA periplasmic chaperonechromosome CDS200482 486 + 0.502058
imp exported protein required for envelope biosynthesis and integritychromosome CDS54755 2355 - 0.5138
ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthasechromosome CDS2639342 1119 - 0.532618
ispH 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S proteinchromosome CDS26277 951 + 0.550999
kdsA 3-deoxy-D-manno-octulosonate 8-phosphate synthasechromosome CDS1269742 855 + 0.515789
kdsB 3-deoxy-manno-octulosonate cytidylyltransferasechromosome CDS971274 747 + 0.527443
kdtA 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS3830598 1278 - 0.539124
kefA fused mechanosensitive channel proteinschromosome CDS485760 3363 + 0.518882
lepA GTP binding membrane proteinchromosome CDS2703981 1800 - 0.537222
lgt phosphatidylglycerol-prolipoprotein diacylglyceryl transferasechromosome CDS2963818 876 - 0.528539
lnt apolipoprotein N-acyltransferasechromosome CDS689765 1539 - 0.556855
lolA chaperone for lipoproteinschromosome CDS937791 615 + 0.508943
lolB chaperone for lipoproteinschromosome CDS1264454 624 - 0.514423
lolC outer membrane-specific lipoprotein transporter subunitchromosome CDS1177004 1200 + 0.541667
lolE outer membrane-specific lipoprotein transporter subunitchromosome CDS1178897 1245 + 0.518875
lomR chromosome pseudo1429172 156 + 0.564103
lpp murein lipoproteinchromosome CDS1759135 237 + 0.506329
lpxA UDP-N-acetylglucosamine acetyltransferasechromosome CDS202560 789 + 0.531052
lpxB tetraacyldisaccharide-1-P synthasechromosome CDS203348 1149 + 0.537859
lpxC UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS106557 918 + 0.510893
lpxD UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS200971 1026 + 0.528265
lpxK lipid A 4'kinasechromosome CDS968788 987 + 0.547112
lpxL lauryl-acyl carrier protein (ACP)-dependent acyltransferasechromosome CDS1117239 921 - 0.529859
lpxM myristoyl-acyl carrier protein (ACP)-dependent acyltransferasechromosome CDS1940936 972 - 0.515432
lspA prolipoprotein signal peptidasechromosome CDS25207 495 + 0.535354
mdoB phosphoglycerol transferase Ichromosome CDS4601830 2292 - 0.52007
mdoH glucan biosynthesis: glycosyl transferasechromosome CDS1112440 2544 + 0.549528
mdtE multidrug resistance efflux transporterchromosome CDS3980026 1158 - 0.545769
mepA murein DD-endopeptidasechromosome CDS2451006 825 - 0.553939
mipA scaffolding protein for murein synthesizing machinerychromosome CDS1867440 747 - 0.522088
mltA membrane-bound lytic murein transglycosylase Achromosome CDS2944737 1098 - 0.528233
mltB membrane-bound lytic murein transglycosylase Bchromosome CDS2823147 1086 - 0.551565
mltC membrane-bound lytic murein transglycosylase Cchromosome CDS3103089 1080 + 0.511111
mltD predicted membrane-bound lytic murein transglycosylase Dchromosome CDS232597 1359 - 0.5195
mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligasechromosome CDS4460465 1374 + 0.55313
mraW S-adenosyl-dependent methyltransferase activity on membrane-located substrateschromosome CDS90094 942 + 0.552017
mraY phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS96002 1083 + 0.533703
mrcA fused penicillin-binding protein 1a murein transglycosylase and murein transpeptidasechromosome CDS4114993 2553 - 0.555425
mrcB fused glycosyl transferase and transpeptidasechromosome CDS164730 2535 + 0.551479
mrdA transpeptidase involved in peptidoglycan synthesischromosome CDS666738 1902 - 0.525237
mreC cell wall structural complex MreBCD transmembrane component MreCchromosome CDS3398730 1104 - 0.559783
mreD cell wall structural complex MreBCD transmembrane component MreDchromosome CDS3398242 489 - 0.513292
mscL mechanosensitive channelchromosome CDS4201982 411 - 0.450122
mscS mechanosensitive channelchromosome CDS3067603 861 - 0.499419
mtgA biosynthetic peptidoglycan transglycosylasechromosome CDS3348936 729 - 0.51989
murA UDP-N-acetylglucosamine1-carboxyvinyltransferasechromosome CDS3335090 1260 - 0.533333
murB UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-bindingchromosome CDS3463596 1029 - 0.45967
murC UDP-N-acetylmuramate:L-alanine ligasechromosome CDS100765 1476 + 0.547425
murD UDP-N-acetylmuramoyl-L-alanine:D-glutamateligasechromosome CDS97087 1317 + 0.548975
murE UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligasechromosome CDS93166 1488 + 0.56586
murF UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligasechromosome CDS94650 1359 + 0.551141
murG N-acetylglucosaminyl transferasechromosome CDS99644 1068 + 0.560861
murI glutamate racemasechromosome CDS3470396 858 - 0.515152
nanA N-acetylneuraminate lyasechromosome CDS3372538 894 - 0.520134
nlpB lipoproteinchromosome CDS2596487 1035 - 0.554589
nlpC predicted lipoproteinchromosome CDS1793981 465 - 0.496774
nlpD predicted outer membrane lipoproteinchromosome CDS2866270 1140 - 0.524561
nlpE lipoprotein involved with copper homeostasis and adhesionchromosome CDS215269 711 + 0.523207
nmpC chromosome pseudo574981 1128 - 0.435284
ompA outer membrane protein A (3a;II*;G;d)chromosome CDS1019435 1041 - 0.537944
ompC outer membrane porin protein Cchromosome CDS2314980 1104 - 0.506341
ompF outer membrane porin 1a (Ia;b;F)chromosome CDS986316 1089 - 0.477502
ompN outer membrane pore protein N, non-specificchromosome CDS1437474 1134 - 0.46649
ompT outer membrane protease VIIchromosome CDS583903 954 - 0.433962
ompW outer membrane protein Wchromosome CDS1315734 639 + 0.500782
ompX outer membrane proteinchromosome CDS850872 516 + 0.513566
pal peptidoglycan-associated outer membrane lipoproteinchromosome CDS779489 522 + 0.51341
pbpC fused transglycosylase and transpeptidasechromosome CDS2643669 2313 - 0.567229
pbpG D-alanyl-D-alanine endopeptidasechromosome CDS2227272 933 - 0.506967
phoE outer membrane phosphoporin protein Echromosome CDS258269 1056 - 0.44697
pldA outer membrane phospholipase Achromosome CDS3630950 870 - 0.512644
prc carboxy-terminal protease for penicillin-binding protein 3chromosome CDS1914482 2049 - 0.50366
rfaB UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6 -D-galactosyltransferasechromosome CDS3836248 1110 + 0.393694
rfaC ADP-heptose:LPS heptosyl transferase Ichromosome CDS3843477 960 - 0.510417
rfaD ADP-L-glycero-D-mannoheptose-6-epimerase,NAD(P)- bindingchromosome CDS3845496 933 - 0.50911
rfaE fused heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferasechromosome CDS3193976 1434 - 0.557183
rfaF ADP-heptose:LPS heptosyltransferase IIchromosome CDS3844440 1047 - 0.536772
rfaG glucosyltransferase Ichromosome CDS3833348 1125 + 0.448
rfaI UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferasechromosome CDS3837357 1020 + 0.361765
rfaJ UDP-D-glucose:(galactosyl)lipopolysaccharidegluc osyltransferasechromosome CDS3838416 1017 + 0.33825
rfaK lipopolysaccharide core biosynthesischromosome CDS3841103 1074 + 0.310056
rfaL O-antigen ligasechromosome CDS3842208 1260 - 0.319048
rfaQ lipopolysaccharide core biosynthesis proteinchromosome CDS3832317 1035 + 0.446377
rfbA glucose-1-phosphate thymidylyltransferasechromosome CDS2112275 882 - 0.427438
rfbB dTDP-glucose 4,6 dehydratase, NAD(P)-bindingchromosome CDS2114113 1086 - 0.436464
rfbC dTDP-4-deoxyrhamnose-3,5-epimerasechromosome CDS2111718 558 - 0.387097
rfbD dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthasechromosome CDS2113214 900 - 0.465556
rfe UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS3667662 1104 - 0.494565
rffA TDP-4-oxo-6-deoxy-D-glucose transaminasechromosome CDS3660405 1131 - 0.543767
rffD UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS3664159 1263 - 0.537609
rffE UDP-N-acetyl glucosamine-2-epimerasechromosome CDS3665418 1131 - 0.526083
rffG dTDP-glucose 4,6-dehydratasechromosome CDS3663092 1068 - 0.537453
rffH glucose-1-phosphate thymidylyltransferasechromosome CDS3662192 882 - 0.55102
rffM UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3655985 741 - 0.531714
rhsA rhsA element core protein RshAchromosome CDS3874099 4134 - 0.595307
rhsB rhsB element core protein RshBchromosome CDS4016988 4236 - 0.588055
rhsC rhsC element core protein RshCchromosome CDS730005 4194 + 0.591559
rhsD rhsD element proteinchromosome CDS522485 4281 + 0.601261
rhsE rhsE element core protein RshEchromosome CDS1529604 2049 + 0.581747
rlpA minor lipoproteinchromosome CDS664524 1089 - 0.573003
rlpB minor lipoproteinchromosome CDS672027 582 - 0.522337
rspA predicted dehydratasechromosome CDS1655641 1215 - 0.506996
slp outer membrane lipoproteinchromosome CDS3985888 567 - 0.458554
slt lytic murein transglycosylase, solublechromosome CDS4635413 1938 + 0.545408
slyB outer membrane lipoproteinchromosome CDS1721590 468 + 0.512821
spr predicted peptidase, outer membrane lipoproteinchromosome CDS2273313 567 + 0.467372
tolA membrane anchored protein in TolA-TolQ-TolR complexchromosome CDS776764 1266 + 0.522907
tolC transport channelchromosome CDS3176771 1482 + 0.513495
tonB membrane spanning protein in TonB-ExbB-ExbD complexchromosome CDS1312803 720 + 0.544444
tsx nucleoside channel, receptor of phage T6 and colicin Kchromosome CDS430353 885 - 0.505085
ugd UDP-glucose 6-dehydrogenasechromosome CDS2100584 1167 - 0.437875
vacJ predicted lipoproteinchromosome CDS2469698 756 - 0.518519
wbbK lipopolysaccharide biosynthesis proteinchromosome CDS2105528 1119 - 0.319035
wcaA predicted glycosyl transferasechromosome CDS2134695 840 - 0.515476
wcaC predicted glycosyl transferasechromosome CDS2132990 1218 - 0.536125
wcaE predicted glycosyl transferasechromosome CDS2131041 747 - 0.455154
wcaI predicted glycosyl transferasechromosome CDS2126660 1224 - 0.555556
wcaJ predicted UDP-glucose lipid carrier transferasechromosome CDS2122297 1395 - 0.546237
wcaL predicted glycosyl transferasechromosome CDS2118044 1221 - 0.548731
wza lipoprotein required for capsular polysaccharide translocation through the outer membranechromosome CDS2138241 1140 - 0.537719
wzzE Entobacterial Common Antigen (ECA) polysaccharide chain length modulation proteinchromosome CDS3666604 1047 - 0.527221
yaeF predicted lipoproteinchromosome CDS216179 825 - 0.493333
yaeL zinc metallopeptidasechromosome CDS196546 1353 + 0.509239
yaeT conserved hypothetical proteinchromosome CDS197928 2433 + 0.506782
yafL predicted lipoprotein and C40 family peptidasechromosome CDS246712 750 + 0.524
yagE predicted lyase/synthasechromosome CDS281481 930 + 0.611828
yaiF hypothetical proteinchromosome CDS381728 387 - 0.45478
yaiP predicted glucosyltransferasechromosome CDS381963 1197 - 0.499582
yaiU hypothetical proteinchromosome CDS392239 1404 + 0.497863
yajG predicted lipoproteinchromosome CDS452813 579 - 0.512953
ybdG predicted mechanosensitive channelchromosome CDS602639 1248 - 0.47516
ybfO conserved hypothetical protein, rhs-likechromosome CDS734642 1434 + 0.546025
ybhG predicted membrane fusion protein (MFP) component of efflux pump, membrane anchorchromosome CDS829396 999 - 0.570571
ybiO predicted mechanosensitive channelchromosome CDS843677 2226 - 0.533243
ybjS predicted NAD(P)H oxidoreductase with NAD(P)-binding Rossmann-fold domainchromosome CDS906162 1014 - 0.544379
ybjT conserved hypothetical protein with NAD(P)-binding Rossmann-fold domainchromosome CDS907274 1431 - 0.549965
yccC cryptic autophosphorylating protein tyrosine kinase Etkchromosome CDS1042452 2181 - 0.505273
yccZ predicted exopolysaccharide export proteinchromosome CDS1045086 1140 - 0.509649
ycdQ predicted glycosyl transferasechromosome CDS1086943 1326 - 0.466817
ycfN thiamin kinasechromosome CDS1164837 825 + 0.533333
ycgR protein involved in flagellar functionchromosome CDS1245370 735 - 0.507483
ydcK hypothetical proteinchromosome CDS1501183 981 - 0.4842
yddL predicted lipoproteinchromosome CDS1547452 291 - 0.419244
ydeU chromosome pseudo1594379 1401 - 0.532477
ydhO predicted lipoproteinchromosome CDS1736149 816 + 0.477941
ydiY conserved hypothetical proteinchromosome CDS1807039 759 - 0.494071
yeaV predicted transporterchromosome CDS1884902 1446 + 0.512448
yeaY predicted lipoproteinchromosome CDS1891665 582 - 0.536082
yebA predicted peptidasechromosome CDS1942027 1323 - 0.524565
yeeL chromosome pseudo2054413 327 - 0.409786
yeeZ predicted epimerase, with NAD(P)-binding Rossmann-fold domainchromosome CDS2090441 825 - 0.518788
yehZ predicted transporter subunitchromosome CDS2221898 918 - 0.540305
yejO predicted autotransporter outer membrane proteinchromosome CDS2289724 2511 - 0.483473
yfaW predicted enolasechromosome CDS2364879 1218 - 0.520525
yfbE uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependentchromosome CDS2370580 1158 + 0.512953
yfbF undecaprenyl phosphate-L-Ara4FN transferasechromosome CDS2371741 969 + 0.498452
yfdH bactoprenol glucosyl transferasechromosome CDS2473660 921 + 0.395223
yfeW predicted periplasmic esterasechromosome CDS2553548 1305 + 0.518774
yfhD predicted transglycosylasechromosome CDS2694595 1419 + 0.503876
yfiB predicted outer membrane lipoproteinchromosome CDS2742281 483 + 0.511387
ygeA predicted racemasechromosome CDS2978599 693 - 0.50938
ygeR Tetratricopeptide repeat transcriptional regulatorchromosome CDS2997792 756 - 0.509259
yhiI predicted HlyD family secretion proteinchromosome CDS4009813 1068 + 0.582397
yhjG predicted outer membrane biogenesis proteinchromosome CDS3962050 2076 + 0.532274
yiaD predicted outer membrane lipoprotienchromosome CDS3923209 660 - 0.578788
yiaT hypothetical proteinchromosome CDS3888547 741 + 0.487179
yibD predicted glycosyl transferasechromosome CDS3850334 1035 + 0.459903
yibJ predicted Rhs-family proteinchromosome CDS3872493 702 - 0.502849
yiiX predicted peptidoglycan peptidasechromosome CDS3508787 609 + 0.52381
yjcP predicted outer membrane factor of efflux pumpchromosome CDS4303043 1467 - 0.557601
yjeP predicted mechanosensitive channelchromosome CDS4390727 3324 - 0.557461
yjhH predicted lyase/synthasechromosome CDS4528785 906 - 0.52649
ylbH conserved hypothetical protein, rhs-likechromosome CDS527173 711 + 0.445851
ynaI conserved inner membrane proteinchromosome CDS1396605 1032 - 0.432171
yncA predicted acyltransferase with acyl-CoA N-acyltransferase domainchromosome CDS1520042 519 - 0.531792
yohG predicted outer membrane proteinchromosome CDS2230657 1089 - 0.557392
yohK predicted inner membrane proteinchromosome CDS2234353 696 + 0.534483
ypfG hypothetical proteinchromosome CDS2580390 1044 - 0.545977
yqeC conserved hypothetical proteinchromosome CDS3012943 771 - 0.50454
yqhH predicted outer membrane lipoproteinchromosome CDS3157283 258 + 0.484496
yraR predicted nucleoside-diphosphate-sugar epimerasechromosome CDS3298066 636 - 0.548742
ytfB predicted cell envelope opacity-associated proteinchromosome CDS4432759 639 - 0.557121
ytfG NAD(P)H:quinone oxidoreductasechromosome CDS4437844 861 - 0.542393
ytfM predicted outer membrane protein and surface antigenchromosome CDS4447062 1734 + 0.533449