Gene list
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COG category: Cell wall/membrane biogenesis
Organism: Tropheryma whipplei str. Twist, twist
Number of genes found: 43
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Tropheryma whipplei str. Twist, twist | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TWT149 | NPL/P60 family secreted protein | SubName: Full=NPL/P60 family secreted protein; | chromosome | CDS | 186399 | 1233 | + | 0.50365 |
NA | TWT088 | membrane-associated Zn-dependent protease-like protein | SubName: Full=Membrane-associated Zn-dependent protease-like protein; | chromosome | CDS | 97711 | 1128 | + | 0.43617 |
NA | TWT797 | unknown | SubName: Full=Uncharacterized protein; | chromosome | CDS | 915752 | 1218 | + | 0.472906 |
NA | TWT564 | unknown | SubName: Full=Uncharacterized protein; | chromosome | CDS | 656356 | 756 | + | 0.484127 |
NA | TWT495 | alanine racemase-like protein | SubName: Full=Alanine racemase-like protein; EC=5.1.1.1; | chromosome | CDS | 591764 | 675 | + | 0.463704 |
NA | TWT036 | glycosyltransferase | SubName: Full=Glycosyltransferase; | chromosome | CDS | 36127 | 972 | + | 0.459877 |
NA | TWT765 | glycosyltransferase | SubName: Full=Glycosyltransferase; | chromosome | CDS | 882872 | 804 | - | 0.486318 |
NA | TWT289 | NPL/P60 family secreted protein | SubName: Full=NPL/P60 family secreted protein; | chromosome | CDS | 371599 | 894 | + | 0.525727 |
NA | TWT188 | putative UDP-N-acetylglucosamine pyrophosphorylase | RecName: Full=Bifunctional protein GlmU; Includes: RecName: Full=UDP-N-acetylglucosamine pyrophosphorylase; EC=2.7.7.23; AltName: Full=N-acetylglucosamine-1-phosphate uridyltransferase; Includes: RecName: Full=Glucosamine-1-phosphate N-acetyltransferase; EC=2.3.1.157; | chromosome | CDS | 237905 | 1818 | - | 0.441694 |
NA | TWT038 | glycosyltransferase | SubName: Full=Glycosyltransferase; | chromosome | CDS | 37559 | 729 | - | 0.484225 |
NA | TWT498 | UDP-N-acetylmuramyl tripeptide synthase-like protein | SubName: Full=UDP-N-acetylmuramyl tripeptide synthase-like protein; | chromosome | CDS | 594402 | 1386 | - | 0.459596 |
NA | TWT220 | unknown | RecName: Full=Ribosomal RNA small subunit methyltransferase H; EC=2.1.1.199; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH; | chromosome | CDS | 305316 | 954 | + | 0.457023 |
NA | TWT034 | ABC transporter ATP-binding protein | SubName: Full=ABC transporter ATP-binding protein; | chromosome | CDS | 34313 | 807 | - | 0.422553 |
NA | TWT450 | unknown | SubName: Full=Uncharacterized protein; | chromosome | CDS | 542320 | 795 | + | 0.415094 |
NA | TWT312 | glycosyltransferase | SubName: Full=Glycosyltransferase; | chromosome | CDS | 395408 | 1176 | + | 0.468537 |
NA | TWT309 | putative prolipoprotein diacylglyceryl transferase | RecName: Full=Prolipoprotein diacylglyceryl transferase; EC=2.4.99.-; | chromosome | CDS | 392767 | 819 | + | 0.423687 |
NA | TWT035 | ABC transporter permease protein | SubName: Full=ABC transporter permease protein; | chromosome | CDS | 35171 | 894 | - | 0.438479 |
alr | TWT496 | alanine racemase | RecName: Full=Alanine racemase; EC=5.1.1.1; | chromosome | CDS | 592488 | 1161 | + | 0.459087 |
dacB | TWT327 | serine-type D-Ala-D-Ala carboxypeptidase | SubName: Full=Serine-type D-Ala-D-Ala carboxypeptidase; EC=3.4.16.4; | chromosome | CDS | 408392 | 942 | - | 0.406582 |
ddlA | TWT505 | D-alanine--D-alanine ligase | RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase; | chromosome | CDS | 605074 | 1044 | - | 0.439655 |
ftsQ | TWT230 | cell division protein FtsQ | SubName: Full=Cell division protein FtsQ; | chromosome | CDS | 317700 | 750 | + | 0.450667 |
glmS | TWT606 | glucosamine--fructose-6-phosphateaminotransferas e | RecName: Full=Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; EC=2.6.1.16; AltName: Full=D-fructose-6-phosphate amidotransferase; AltName: Full=GFAT; AltName: Full=Glucosamine-6-phosphate synthase; AltName: Full=Hexosephosphate aminotransferase; AltName: Full=L-glutamine--D-fructose-6-phosphate amidotransferase; | chromosome | CDS | 709829 | 1851 | - | 0.464614 |
ispH1 | TWT642 | IspH protein 1 | RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; | chromosome | CDS | 757071 | 969 | - | 0.500516 |
lepA | TWT278 | GTP-binding protein LepA | RecName: Full=Elongation factor 4; Short=EF-4; EC=3.6.5.n1; AltName: Full=Ribosomal back-translocase LepA; | chromosome | CDS | 360093 | 1806 | + | 0.467331 |
lpsA | TWT512 | lipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 614772 | 453 | - | 0.426049 |
manC | TWT356 | Mannose-1-phosphate guanylyltransferase | SubName: Full=Mannose-1-phosphate guanylyltransferase; EC=2.7.7.22; | chromosome | CDS | 440556 | 1095 | + | 0.473973 |
menC | TWT737 | O-succinylbenzoate-CoA synthase | SubName: Full=O-succinylbenzoate-CoA synthase; | chromosome | CDS | 849181 | 1251 | + | 0.444444 |
mscL | TWT661 | large-conductance mechanosensitive channel | SubName: Full=Large-conductance mechanosensitive channel; | chromosome | CDS | 773866 | 624 | + | 0.469551 |
murA | TWT508 | UDP-N-acetylglucosamine1-carboxyvinyltransferase | SubName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; EC=2.5.1.7; | chromosome | CDS | 607791 | 1326 | - | 0.472097 |
murB | TWT718 | UDP-N-acetylmuramate dehydrogenase | RecName: Full=UDP-N-acetylenolpyruvoylglucosamine reductase; EC=1.3.1.98; AltName: Full=UDP-N-acetylmuramate dehydrogenase; | chromosome | CDS | 829729 | 1056 | - | 0.482008 |
murC | TWT229 | UDP-N-acetylmuramate--alanine ligase | SubName: Full=UDP-N-acetylmuramate--alanine ligase; EC=6.3.2.8; | chromosome | CDS | 316246 | 1428 | + | 0.433473 |
murD | TWT226 | UDP-N-acetylmuramoylalanine--D-glutamateligase | RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase; EC=6.3.2.9; AltName: Full=D-glutamic acid-adding enzyme; AltName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; | chromosome | CDS | 312475 | 1587 | + | 0.451166 |
murE | TWT225 | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase | RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; EC=6.3.2.-; AltName: Full=UDP-MurNAc-tripeptide synthetase; | chromosome | CDS | 311022 | 1596 | + | 0.442356 |
murF | TWT223 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase | RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; EC=6.3.2.10; | chromosome | CDS | 308591 | 1395 | + | 0.431541 |
murG | TWT228 | UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase | RecName: Full=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; EC=2.4.1.227; AltName: Full=Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; | chromosome | CDS | 315173 | 1071 | + | 0.479925 |
murX | TWT224 | phospho-N-acetylmuramoyl-pentapeptide-transferase | RecName: Full=Phospho-N-acetylmuramoyl-pentapeptide-transferase; EC=2.7.8.13; AltName: Full=UDP-MurNAc-pentapeptide phosphotransferase; | chromosome | CDS | 309982 | 1110 | + | 0.425225 |
pbpA | TWT776 | penicillin-binding protein | SubName: Full=Penicillin-binding protein; | chromosome | CDS | 892377 | 1458 | + | 0.465706 |
pbpB | TWT222 | penicillin-binding protein 2 | SubName: Full=Penicillin-binding protein 2; | chromosome | CDS | 306824 | 1746 | + | 0.451317 |
rfe | TWT432 | undecaprenyl-phosphatealpha-N-acetylglucosaminyltransferase | SubName: Full=Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; EC=2.4.1.-; | chromosome | CDS | 524024 | 1101 | - | 0.42416 |
rmlA | TWT032 | glucose-1-phosphate thymidylyltransferase | RecName: Full=Glucose-1-phosphate thymidylyltransferase; EC=2.7.7.24; | chromosome | CDS | 32582 | 879 | + | 0.449374 |
rmlB | TWT030 | dTDP-glucose 4,6-dehydratase | RecName: Full=dTDP-glucose 4,6-dehydratase; EC=4.2.1.46; | chromosome | CDS | 30675 | 984 | - | 0.456301 |
rmlC | TWT031 | dTDP-4-dehydrorhamnose 3,5-epimerase | SubName: Full=dTDP-4-dehydrorhamnose 3,5-epimerase; EC=5.1.3.13; | chromosome | CDS | 31903 | 624 | + | 0.501603 |
rmlD | TWT029 | dTDP-4-dehydrorhamnose reductase | SubName: Full=dTDP-4-dehydrorhamnose reductase; EC=1.1.1.133; | chromosome | CDS | 29815 | 864 | - | 0.488426 |