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2024-05-03 17:51:20

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 203

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S2659 hypothetical proteinchromosome CDS2547870 1044 - 0.541188
NA S2248 hypothetical proteinchromosome CDS2121715 2199 - 0.530696
NA S0878 putative membrane proteinchromosome CDS865361 1116 + 0.53405
NA S1242 hypothetical proteinchromosome CDS1203948 2322 + 0.472438
NA S2466 putative sugar transferasechromosome CDS2359258 969 + 0.495356
NA S2105 putative outer membrane pore proteinchromosome CDS2010943 888 + 0.452703
NA S2465 putative enzymechromosome CDS2358148 1107 + 0.521229
NA S0786 putative membrane proteinchromosome CDS767958 999 - 0.572573
NA S1425 hypothetical proteinchromosome CDS1393911 1032 - 0.437016
NA S3060 hypothetical proteinchromosome CDS2946227 492 - 0.534553
NA S4249 hypothetical proteinchromosome CDS4163583 1026 + 0.502924
NA S2198 putative enzyme of sugar metabolismchromosome CDS2076788 825 - 0.511515
NA S2108 putative outer membrane proteinchromosome CDS2013047 210 + 0.414286
NA S1537 putative outer membrane proteinchromosome CDS1496686 582 + 0.539519
NA S1492 hypothetical proteinchromosome CDS1453879 981 - 0.482161
NA S3067 putative lipoproteinchromosome CDS2951229 780 - 0.503846
NA S3965 putative secreted autotransporter toxinchromosome CDS3860121 507 + 0.441815
NA S1887 putative outer membrane porin proteinchromosome CDS1828994 1101 + 0.44505
NA S3223 hypothetical proteinchromosome CDS3109082 897 + 0.546265
NA S3195 outer membrane fluffing proteinchromosome CDS3079305 2121 + 0.585101
NA S0754 putative tail assembly proteinchromosome CDS736498 600 + 0.586667
NA S1416 hypothetical proteinchromosome CDS1385649 639 - 0.422535
NA S1901 putative resistance proteinchromosome CDS1844699 519 + 0.520231
NA S3025 putative amidasechromosome CDS2902773 1344 - 0.526786
NA S0864 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS849793 1050 - 0.537143
NA S3298 putative kinasechromosome CDS3173108 1434 - 0.564156
NA S2214 hypothetical proteinchromosome CDS2091026 552 - 0.333333
NA S1731 hypothetical proteinchromosome CDS1669488 516 - 0.513566
NA S1625 hypothetical proteinchromosome CDS1579126 726 + 0.498623
NA S2216 hypothetical proteinchromosome CDS2092448 492 - 0.349593
NA S3707 putative sensor proteinchromosome CDS3597087 1215 - 0.500412
NA S2469 hypothetical proteinchromosome CDS2363094 1653 + 0.511192
acrA S0415 acriflavin resistance protein AcrA precursorchromosome CDS420758 1194 - 0.536851
aefA S0417 putative alpha helix proteinchromosome CDS422868 3363 + 0.519179
alr S3578 alanine racemase 1chromosome CDS3447630 1080 + 0.557407
amiA S2636 N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2526421 870 + 0.501149
amiB S4592 N-acetylmuramoyl-l-alanine amidase II, murein hydrolasechromosome CDS4493043 1338 + 0.54858
asmA S2252 suppressor of ompF assembly mutantschromosome CDS2128159 1854 - 0.525351
blc S4572 outer membrane lipoprotein (lipocalin)chromosome CDS4473769 534 - 0.533708
caiT S0039 probable carnitine transporterchromosome CDS39333 1515 - 0.522112
cfa S1821 cyclopropane fatty acyl phospholipid synthasechromosome CDS1760692 1149 + 0.482158
cutF S0185 copper homeostasis protein (lipoprotein)chromosome CDS205700 711 + 0.513361
dacA S0671 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5chromosome CDS682789 1212 + 0.492574
dacB S3440 D-alanyl-D-alanine carboxypeptidase, fraction B, penicillin-binding protein 4chromosome CDS3312263 1434 + 0.531381
dadX S1267 alanine racemase 2chromosome CDS1225471 1071 + 0.577031
dapA S2671 dihydrodipicolinate synthasechromosome CDS2565073 879 - 0.516496
ddg S2582 putative heat shock proteinchromosome CDS2476769 987 + 0.507599
ddlA S0254 D-alanine-D-alanine ligase Achromosome CDS258763 1095 + 0.513242
ddlB S0091 D-alanine-D-alanine ligase Bchromosome CDS100338 921 + 0.513572
dgkA S3568 diacylglycerol kinasechromosome CDS3438485 369 + 0.517615
dniR S0205 transcriptional regulator for nitrite reductase (cytochrome c552)chromosome CDS224640 1347 - 0.518189
flgJ S1165 flagellar basal body protein FlgJchromosome CDS1127985 942 + 0.539278
ftsI S0083 penicillin-binding protein 3; peptidoglycan synthetasechromosome CDS89518 1767 + 0.538766
ftsQ S0092 cell division proteinchromosome CDS101260 831 + 0.533093
galE S0553 UDP-galactose-4-epimerasechromosome CDS562001 1017 + 0.542773
galF S2228 UTP--glucose-1-P uridyltransferasechromosome CDS2101928 894 - 0.51566
galU S1322 glucose-1-phosphate uridylyltransferasechromosome CDS1286389 909 + 0.469747
gidB S3948 glucose-inhibited division protein GidBchromosome CDS3842346 624 + 0.485577
glmS S3959 L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS3852356 1830 + 0.538251
glmU S3958 N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS3850824 1371 + 0.530999
gmd S2239 GDP-D-mannose dehydratasechromosome CDS2115679 1122 - 0.542781
gtrBI S0320 putative bactoprenol glucosyl transferasechromosome CDS322766 930 - 0.422581
hemM S1296 carrier of lipoproteins to outer membranechromosome CDS1259473 624 - 0.514423
hlpA S0171 histone-like proteinchromosome CDS190913 486 + 0.495885
htrB S1138 heat shock proteinchromosome CDS1106312 921 - 0.528773
imp S0053 organic solvent tolerance proteinchromosome CDS53559 2355 - 0.5138
kdsA S1302 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS1264761 855 + 0.515789
kdsB S0978 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS958606 747 + 0.524766
kdtA S4096 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome CDS3995126 1278 - 0.539124
lepA S2804 GTP-binding elongation factorchromosome CDS2695984 1800 - 0.536667
lgt S3036 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipidchromosome CDS2920205 876 - 0.530822
lnt S0647 apolipoprotein N-acyltransferase, copper homeostasis proteinchromosome CDS657071 1539 + 0.556855
lolA S0891 periplasmic proteinchromosome CDS883588 615 + 0.508943
lpp S1839 murein lipoproteinchromosome CDS1777294 237 + 0.506329
lpxA S0174 UDP-N-acetylglucosamine acetyltransferasechromosome CDS192991 789 + 0.524715
lpxB S0175 tetraacyldisaccharide-1-Pchromosome CDS193779 1149 + 0.5396
lpxC S0095 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS104662 918 + 0.511983
lpxD S0172 UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS191402 1026 + 0.530214
lspA S0026 prolipoprotein signal peptidase (SPase II)chromosome CDS24161 495 + 0.537374
lytB S0028 LytB proteinchromosome CDS25193 951 + 0.550999
mdoH S1119 membrane glycosyltransferasechromosome CDS1091059 2544 + 0.546777
mepA S2539 murein DD-endopeptidasechromosome CDS2433140 825 - 0.551515
mltA S3022 membrane-bound lytic murein transglycosylase Achromosome CDS2901206 1098 - 0.530965
mltB S2915 membrane-bound lytic murein transglycosylase Bchromosome CDS2792799 1086 - 0.551565
mltC S3163 membrane-bound lytic murein transglycosylase Cchromosome CDS3038705 1083 + 0.508772
mltE S1270 murein transglycosylase Echromosome CDS1231462 726 + 0.508264
mraY S0086 phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS94107 1083 + 0.528163
mrcA S4348 peptidoglycan synthetase, penicillin-binding protein 1Achromosome CDS4278065 2553 - 0.552683
mrcB S0144 peptidoglycan synthetase; penicillin-binding protein 1Bchromosome CDS155999 2535 + 0.549901
mrdA S0668 peptidoglycan synthetase; penicillin-binding protein 2chromosome CDS678535 1902 + 0.52734
mreC S3505 rod shape-determining proteinchromosome CDS3376736 897 - 0.539576
mreD S3504 rod shape-determining proteinchromosome CDS3376041 489 - 0.509202
msbB S1931 suppressor of htrB, heat shock proteinchromosome CDS1872291 972 - 0.513375
murA S3447 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3318533 1260 - 0.533333
murB S3690 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS3580381 1029 - 0.464529
murC S0090 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligasechromosome CDS98870 1476 + 0.544038
murD S0087 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS95192 1317 + 0.553531
murE S0084 meso-diaminopimelate-adding enzymechromosome CDS91271 1488 + 0.567876
murF S0085 D-alanine:D-alanine-adding enzymechromosome CDS92755 1359 + 0.548197
murG S0089 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS97749 1068 + 0.557116
murI S3695 glutamate racemasechromosome CDS3586922 789 - 0.513308
nanA S3478 N-acetylneuraminate lyase (aldolase)chromosome CDS3349862 894 - 0.521253
nlpB S2670 lipoprotein-34chromosome CDS2564022 1035 - 0.553623
nlpC S1640 lipoproteinchromosome CDS1592652 465 + 0.490323
nlpD S2958 lipoproteinchromosome CDS2834455 1140 - 0.523684
nmpC S2073 putative outer membrane porin protein C precurserchromosome CDS1985546 1083 + 0.441367
ompA S1023 outer membrane protein 3a (II*;G;d)chromosome CDS1010044 1047 - 0.531996
ompC S2429 outer membrane protein 1b (Ib;c)chromosome CDS2312489 1122 - 0.503565
ompF S0990 outer membrane protein 1a (Ia;b;F)chromosome CDS975087 1089 - 0.476584
ompX S0807 outer membrane protein Xchromosome CDS790669 516 + 0.513566
pal S0569 peptidoglycan-associated lipoproteinchromosome CDS573766 522 - 0.51341
pbpG S2348 penicillin-binding protein 7chromosome CDS2226197 933 - 0.506967
phoE S0310 outer membrane pore protein E (E,Ic,NmpAB)chromosome CDS309151 1056 - 0.451705
pic S3178 serine protease precurserchromosome CDS3059914 3213 - 0.511983
pldA S3856 outer membrane phospholipase Achromosome CDS3754438 870 - 0.511494
prc S1511 carboxy-terminal protease for penicillin-binding protein 3chromosome CDS1471637 2043 + 0.501713
rfaC S4107 heptosyl transferase Ichromosome CDS4005774 963 - 0.502596
rfaD S4109 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS4007826 933 - 0.50911
rfaF S4108 ADP-heptose--lps heptosyltransferase IIchromosome CDS4006770 1047 - 0.538682
rfbA S2225 glucose-1-phosphate thymidylyltransferasechromosome CDS2098634 879 - 0.437998
rfbB S2227 dTDP-glucose 4,6 dehydratasechromosome CDS2100470 1086 - 0.441989
rfbC S2223 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS2098085 546 - 0.377289
rfbD S2226 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS2099571 900 - 0.492222
rfbG S2220 dTDP-rhamnosyl transferasechromosome CDS2094995 870 - 0.304598
rfbJ S2217 glycosyl transferasechromosome CDS2092997 390 - 0.369231
rfe S3902 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS3795710 1104 - 0.492754
rffG S3898 dTDP-glucose 4,6-dehydratasechromosome CDS3791140 1068 - 0.535581
rffH S3897 glucose-1-phosphate thymidylyltransferasechromosome CDS3790240 882 - 0.549887
rhs-like S0289 putative Rhs-family proteinchromosome CDS288096 990 + 0.563636
rhsD S0288 putative Rhs-family proteinchromosome CDS285811 2289 + 0.59502
rhsE S0605 putative Rhs-family proteinchromosome CDS615026 3387 - 0.572483
rlpA S0670 minor lipoproteinchromosome CDS681562 1089 + 0.574839
rlpB S0662 minor lipoproteinchromosome CDS674566 582 + 0.525773
rspA S1718 starvation sensing proteinchromosome CDS1660824 1215 - 0.507819
sigA S4824 serine proteasechromosome CDS3052614 3858 + 0.417574
slp S4227 outer membrane protein induced after carbon starvationchromosome CDS4142263 600 - 0.446667
slt S4695 soluble lytic murein transglycosylasechromosome CDS4588463 1965 + 0.54402
slyB S1800 putative outer membrane proteinchromosome CDS1737568 468 + 0.512821
spr S2391 putative lipoproteinchromosome CDS2272635 567 + 0.467372
tolA S0571 membrane spanning proteinchromosome CDS575747 1242 - 0.522544
tolC S3280 outer membrane channel TolCchromosome CDS3159914 1482 + 0.51417
tonB S1341 membrane protein, energy transducerchromosome CDS1307268 729 + 0.545953
tsx S0356 outer membrane protein Tsxchromosome CDS359762 885 - 0.505085
vacJ S2559 lipoprotein precursorchromosome CDS2452671 756 - 0.52381
waaD S4105 lipopolysaccharide1,2-N-acetylglucosaminetransfe rasechromosome CDS4003391 1143 + 0.367454
waaG S4100 LPS alpha1,3-glucosyltransferasechromosome CDS3998647 1125 + 0.483556
waaI S4106 lipid A-core, surface polymer ligasechromosome CDS4004569 1209 - 0.353184
waaJ S4104 putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferasechromosome CDS4002369 1014 + 0.308679
waaL S4102 UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferasechromosome CDS4000604 1008 + 0.310516
waaQ S4099 lipopolysaccharide core biosynthesis proteinchromosome CDS3997592 1059 + 0.466478
wcaG S2238 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2114708 969 - 0.558308
wcaI S2236 putative colanic biosynthesis glycosyl transferasechromosome CDS2113009 1224 - 0.552288
wcaJ S2233 putative colanic acid biosynthsis UDP-glucose lipid carrier transferasechromosome CDS2108558 1395 - 0.539068
wcaL S2230 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2104401 1221 - 0.542179
wecB S3900 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS3793466 1173 - 0.526854
wecC S3899 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS3792207 1263 - 0.537609
wecE S3895 putative regulatorchromosome CDS3788453 1131 - 0.544651
wecG S3891 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3784033 741 - 0.533063
wza S2250 putative polysaccharide export proteinchromosome CDS2124329 1140 - 0.532456
wzzB S2210 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2086662 1014 - 0.456607
wzzE S3901 putative transport proteinchromosome CDS3794652 1047 - 0.524355
yabC S0081 putative apolipoproteinchromosome CDS88199 942 + 0.552017
yaeF S0186 hypothetical proteinchromosome CDS206565 825 - 0.487273
yaeL S0169 hypothetical proteinchromosome CDS186977 1353 + 0.5085
yaeT S0170 hypothetical proteinchromosome CDS188359 2433 + 0.503083
yafL S0296 putative lipoproteinchromosome CDS296871 555 + 0.54955
yajG S0385 putative polymerase/proteinasechromosome CDS388489 681 - 0.50514
ybdG S0492 putative transport proteinchromosome CDS501433 1248 - 0.47516
ybjT S0865 putative dTDP-glucose enzymechromosome CDS850905 1431 - 0.548567
ycaH S0975 putative EC 1.2 enzymechromosome CDS956120 987 + 0.549139
yccZ S1052 BexD protein homologchromosome CDS1036532 1140 - 0.509649
ycfN S1190 putative beta-glucosidasechromosome CDS1153870 825 + 0.527273
ycfU S1200 hypothetical proteinchromosome CDS1166061 1200 + 0.545833
ycfW S1202 putative kinasechromosome CDS1167954 1245 + 0.514859
ycgR S1272 hypothetical proteinchromosome CDS1232189 735 - 0.504762
yciD S1345 putative outer membrane proteinchromosome CDS1310208 639 + 0.502347
ycjG S1414 putative muconate cycloisomerase Ichromosome CDS1383690 966 + 0.543478
ydhO S1815 putative lipoproteinchromosome CDS1753718 828 + 0.479469
yeaF S1556 hypothetical proteinchromosome CDS1514742 747 + 0.52075
yebA S1932 hypothetical proteinchromosome CDS1873382 1323 - 0.521542
yegX S2289 hypothetical proteinchromosome CDS2169877 822 - 0.479319
yehZ S2345 putative transport system permease proteinchromosome CDS2220782 918 - 0.546841
yejO S2406 putative ATP-binding component of a transport systemchromosome CDS2289047 2511 - 0.486659
yfhD S2777 putative periplasmic binding transport proteinchromosome CDS2674398 1419 + 0.503876
yfiB S2842 putative outer membrane proteinchromosome CDS2736909 483 + 0.509317
ygcX S2994 putative glucarate dehydratasechromosome CDS2871735 1341 - 0.530201
ygcY S2995 putative glucarate dehydratasechromosome CDS2873096 1341 - 0.53915
ygeA S3048 putative resistance proteinschromosome CDS2934985 693 - 0.506494
yggB S3109 putative transport proteinchromosome CDS2995296 861 - 0.498258
yhfN S4373 putative transport proteinchromosome CDS4301195 1023 - 0.54741
yhiI S4260 putative membrane proteinchromosome CDS4178757 1068 + 0.59176
yhjG S4211 hypothetical proteinchromosome CDS4124982 2061 + 0.52984
yiaD S4183 putative outer membrane proteinchromosome CDS4086947 627 - 0.593301
yjcP S3607 putative enzymechromosome CDS3481775 1467 - 0.556919
yjeP S4581 putative periplasmic binding proteinchromosome CDS4482805 3312 - 0.555254
yjfG S4519 putative ligasechromosome CDS4422102 1374 - 0.55313
ylcB S0481 putative resistance proteinchromosome CDS489307 1383 + 0.518438
yohK S2356 putative seritonin transporterchromosome CDS2233264 696 + 0.537356
yqhH S3262 hypothetical proteinchromosome CDS3142731 258 + 0.476744
yraR S3410 hypothetical proteinchromosome CDS3281534 681 - 0.547724
ytfB S4545 hypothetical proteinchromosome CDS4451419 582 + 0.54811
ytfG S4539 putative oxidoreductasechromosome CDS4446147 861 + 0.538908
ytfM S4531 hypothetical proteinchromosome CDS4436076 1734 - 0.534025